BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1461.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775497.1| small multidrug resistance transmembrane pro...   181   2e-44
ref|YP_004753111.1| drug/metabolite transporter superfamily perm...   163   8e-39
ref|ZP_08275661.1| putative small multidrug resistance transmemb...   162   2e-38
ref|ZP_07676943.1| membrane protein [Ralstonia sp. 5_7_47FAA] >g...   131   3e-29
ref|YP_001898774.1| small multidrug resistance protein [Ralstoni...   131   4e-29

>ref|YP_003775497.1| small multidrug resistance transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63589.1| small multidrug resistance transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 123

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/123 (94%), Positives = 120/123 (97%)

Query: 1   MNLTTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFSTGLKLATQLPIIGGLSCY 60
           MNLTTFGFIF GICLNAVAQLLLKAGTNAVGAIHLTAENWFSTGLKLA QLPIIGGLSCY
Sbjct: 1   MNLTTFGFIFAGICLNAVAQLLLKAGTNAVGAIHLTAENWFSTGLKLAMQLPIIGGLSCY 60

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLLAIGVIIVGVVLL 120
           VISV VWIIGLSRVDVT+AYP+LSLGYIINA+GAWYFLGEA+SLQRLLAIGVIIVGVVLL
Sbjct: 61  VISVVVWIIGLSRVDVTVAYPMLSLGYIINAVGAWYFLGEAVSLQRLLAIGVIIVGVVLL 120

Query: 121 TRS 123
           TRS
Sbjct: 121 TRS 123


>ref|YP_004753111.1| drug/metabolite transporter superfamily permease [Collimonas
           fungivorans Ter331]
 gb|AEK62288.1| Permeases of the drug/metabolite transporter (DMT) superfamily
           [Collimonas fungivorans Ter331]
          Length = 125

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 102/123 (82%), Positives = 115/123 (93%)

Query: 1   MNLTTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFSTGLKLATQLPIIGGLSCY 60
           MNLTTF FI  G+CLNAVAQLLLKAGTNAVG I LT +NWF+TG+KLATQLPI+GGL+CY
Sbjct: 3   MNLTTFAFIISGVCLNAVAQLLLKAGTNAVGVISLTPQNWFATGIKLATQLPILGGLTCY 62

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLLAIGVIIVGVVLL 120
           VIS+ VWIIGLSRVDVTIAYP+LSLGY+I+A+GAWYFLGEA+S QRL+AIGVIIVGVVLL
Sbjct: 63  VISLIVWIIGLSRVDVTIAYPMLSLGYVISAVGAWYFLGEAVSAQRLVAIGVIIVGVVLL 122

Query: 121 TRS 123
           TRS
Sbjct: 123 TRS 125


>ref|ZP_08275661.1| putative small multidrug resistance transmembrane protein
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30866.1| putative small multidrug resistance transmembrane protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 124

 Score =  162 bits (410), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 105/123 (85%), Positives = 116/123 (94%)

Query: 1   MNLTTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFSTGLKLATQLPIIGGLSCY 60
           MNL TFGFI  GICLNA+AQLLLKAGTNAVGAIHLTAENWFSTG+KLATQLPI+GGL+CY
Sbjct: 2   MNLPTFGFILTGICLNAIAQLLLKAGTNAVGAIHLTAENWFSTGIKLATQLPILGGLTCY 61

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLLAIGVIIVGVVLL 120
           V+SV VWIIGLSRVDVTIAYP+LSLGYIINA+GAWYFLGE +S+QR+L IGVIIVGV+LL
Sbjct: 62  VVSVLVWIIGLSRVDVTIAYPMLSLGYIINAVGAWYFLGEMVSMQRILGIGVIIVGVILL 121

Query: 121 TRS 123
            RS
Sbjct: 122 ARS 124


>ref|ZP_07676943.1| membrane protein [Ralstonia sp. 5_7_47FAA]
 gb|EFP64653.1| membrane protein [Ralstonia sp. 5_7_47FAA]
          Length = 123

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 81/123 (65%), Positives = 97/123 (78%)

Query: 1   MNLTTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFSTGLKLATQLPIIGGLSCY 60
           MNL TFG I  G+ LNA AQLLLKAG N +G    +A+N    G+KLATQ PIIGGLSCY
Sbjct: 1   MNLVTFGLILTGVMLNACAQLLLKAGVNNIGRFAFSADNILPIGIKLATQWPIIGGLSCY 60

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLLAIGVIIVGVVLL 120
           VISV VWI+GLSRVDVTIAYP+LSLGY++NA  AWY  GE +S+QRL+ I +I+VGV++L
Sbjct: 61  VISVVVWILGLSRVDVTIAYPMLSLGYVVNAFLAWYLFGEVLSVQRLIGIAIILVGVLVL 120

Query: 121 TRS 123
            RS
Sbjct: 121 ARS 123


>ref|YP_001898774.1| small multidrug resistance protein [Ralstonia pickettii 12J]
 gb|ACD26342.1| small multidrug resistance protein [Ralstonia pickettii 12J]
          Length = 123

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 80/123 (65%), Positives = 97/123 (78%)

Query: 1   MNLTTFGFIFVGICLNAVAQLLLKAGTNAVGAIHLTAENWFSTGLKLATQLPIIGGLSCY 60
           MNL TFG I  G+ LNA AQLLLKAG N +G    +A+N    G+KLATQ PI+GGLSCY
Sbjct: 1   MNLVTFGLILTGVMLNACAQLLLKAGVNNIGRFAFSADNILPIGIKLATQWPIVGGLSCY 60

Query: 61  VISVGVWIIGLSRVDVTIAYPLLSLGYIINAIGAWYFLGEAISLQRLLAIGVIIVGVVLL 120
           VISV VWI+GLSRVDVTIAYP+LSLGY++NA  AWY  GE +S+QRL+ I +I+VGV++L
Sbjct: 61  VISVVVWILGLSRVDVTIAYPMLSLGYVVNAFLAWYLFGEVLSVQRLIGIAIILVGVLVL 120

Query: 121 TRS 123
            RS
Sbjct: 121 ARS 123