BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1457.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775494.1| methionyl-tRNA formyltransferase [Herbaspiri... 598 e-169 ref|YP_004753114.1| polymyxin resistance protein ArnA_FT, UDP-4-... 394 e-108 ref|YP_003906775.1| formyl transferase domain-containing protein... 393 e-107 ref|ZP_02883468.1| formyl transferase domain protein [Burkholder... 390 e-107 ref|YP_004228330.1| formyl transferase domain-containing protein... 389 e-106 >ref|YP_003775494.1| methionyl-tRNA formyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ63586.1| methionyl-tRNA formyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 598 bits (1541), Expect = e-169, Method: Composition-based stats. Identities = 283/305 (92%), Positives = 297/305 (97%) Query: 1 MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGLCRDHGIACITPA 60 MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAG+CR+HGIACITPA Sbjct: 1 MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGVCREHGIACITPA 60 Query: 61 DPRSPQLLAQLQALQPDFLFSFYYRHMLPVEVLACARRGAYNMHGSLLPKYRGRVPINWA 120 DP+SPQLLAQ+QA QPDF+FSFYYRHMLPVEVLA A+RGAYNMHGSLLPKYRGRVPINWA Sbjct: 61 DPKSPQLLAQVQAAQPDFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWA 120 Query: 121 VLHGETETGATLHEMTVKPDAGAIVAQTAVPILPDDTAHEVFGKVVVAAEMTLWNVLPAM 180 VLHGETETGATLHEMTVKPDAGAIVAQT+VPILPDDTAHEVFGKVVVAAE+TLWNVLPAM Sbjct: 121 VLHGETETGATLHEMTVKPDAGAIVAQTSVPILPDDTAHEVFGKVVVAAELTLWNVLPAM 180 Query: 181 LAGNTPNLPNDLSQGSYFSGRKPEDGRIDWRRTAGEVHNLVRAVAPPYPGAFEEIAGDKI 240 L+G TP++PNDLS+GSY+ GRKPEDGRIDWRRTA EVHNLVRAVAPPYPGAFEEIA DKI Sbjct: 181 LSGRTPSMPNDLSKGSYYGGRKPEDGRIDWRRTAREVHNLVRAVAPPYPGAFEEIADDKI 240 Query: 241 TVTRTRLVPPAAHPALQRAHGTQDKFFEGGKLYARCGDGNFLQILGILINDQDASLNNYL 300 TVTRTRLVPP+AHPALQRAHG QDKFFEGGKLYARCGDGNFLQILGI INDQDASLNNYL Sbjct: 241 TVTRTRLVPPSAHPALQRAHGMQDKFFEGGKLYARCGDGNFLQILGIQINDQDASLNNYL 300 Query: 301 KYMAS 305 KYMAS Sbjct: 301 KYMAS 305 >ref|YP_004753114.1| polymyxin resistance protein ArnA_FT, UDP-4-amino-4-deoxy-L-arabinose formylase [Collimonas fungivorans Ter331] gb|AEK62291.1| Polymyxin resistance protein ArnA_FT, UDP-4-amino-4-deoxy-L-arabinose formylase [Collimonas fungivorans Ter331] Length = 302 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 201/298 (67%), Positives = 224/298 (75%), Gaps = 8/298 (2%) Query: 1 MNAVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGLCRDHGIACITPA 60 M AVVFAYH+VGVRCLKVLLARGV ++LVVTHED+ E IWF SV+ LCR HGI I P Sbjct: 1 MKAVVFAYHNVGVRCLKVLLARGVDIALVVTHEDNPQETIWFESVSALCRQHGIPSIAPT 60 Query: 61 DPRSPQLLAQLQALQPDFLFSFYYRHMLPVEVLACARRGAYNMHGSLLPKYRGRVPINWA 120 DP +P+LLAQ+ ALQPDF+FSFYYRHMLPV +LA A+ GAYNMHGSLLPKYRGRVPINWA Sbjct: 61 DPAAPELLAQVAALQPDFIFSFYYRHMLPVALLALAQHGAYNMHGSLLPKYRGRVPINWA 120 Query: 121 VLHGETETGATLHEMTVKPDAGAIVAQTAVPILPDDTAHEVFGKVVVAAEMTLWNVLPAM 180 VLHGETETGATLHEM KPDAGAIVAQT+VPILPDDTA+EVFGKVVVAAE TLWN LP M Sbjct: 121 VLHGETETGATLHEMAAKPDAGAIVAQTSVPILPDDTAYEVFGKVVVAAEQTLWNALPEM 180 Query: 181 LAGNTPNLPNDLSQGSYFSGRKPEDGRIDWRRTAGEVHNLVRAVAPPYPGAFEEIAGDKI 240 L GN P LPNDLSQGSYF GRKPEDG+IDW R A EV+NL RAVAPPYPGA+ + Sbjct: 181 LKGNIPRLPNDLSQGSYFGGRKPEDGKIDWNRPAHEVYNLYRAVAPPYPGAWTIVKERTF 240 Query: 241 TVTRTRLVPPAAH--PA-LQRAHGTQDKFFEGGKLYARCGDGNFLQILGILINDQDAS 295 V + L PA L R D ++ CGDG L I +L + Q + Sbjct: 241 IVGKAYLSAKLLENLPANLPRGLAVVDN-----RIVGVCGDGRALLINELLADGQTVT 293 >ref|YP_003906775.1| formyl transferase domain-containing protein [Burkholderia sp. CCGE1003] gb|ADN57484.1| formyl transferase domain protein [Burkholderia sp. CCGE1003] Length = 311 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 194/282 (68%), Positives = 224/282 (79%), Gaps = 4/282 (1%) Query: 3 AVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGLCRDHGIACITPADP 62 AVVFAYH+VGVRCL+VLLARGV+V+LVVTHEDS TENIWFGSVA + +HGIA +TPADP Sbjct: 5 AVVFAYHNVGVRCLQVLLARGVEVALVVTHEDSPTENIWFGSVASVAAEHGIAVVTPADP 64 Query: 63 RSPQLLAQLQALQPDFLFSFYYRHMLPVEVLACARRGAYNMHGSLLPKYRGRVPINWAVL 122 +SP+L A + A++PDF+FSFYYRHMLPV++LA A RGAYNMHGSLLPKYRGRVP NWAVL Sbjct: 65 KSPELRAAISAVRPDFIFSFYYRHMLPVDLLALAARGAYNMHGSLLPKYRGRVPTNWAVL 124 Query: 123 HGETETGATLHEMTVKPDAGAIVAQTAVPILPDDTAHEVFGKVVVAAEMTLWNVLPAMLA 182 HGETETGATLHEM KPDAGAI+AQT VPILPDDTA +VF KV VAAE TLW VLPA+LA Sbjct: 125 HGETETGATLHEMAAKPDAGAIIAQTPVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLA 184 Query: 183 GNTPNLPNDLSQGSYFSGRKPEDGRIDWRRTAGEVHNLVRAVAPPYPGAFEEIAGDKITV 242 G P+LPNDLS GSYF GR PEDGRIDW + A +V+NL+RAVAPPYPGAF +I G + V Sbjct: 185 GEAPHLPNDLSHGSYFGGRTPEDGRIDWNQPAQQVYNLIRAVAPPYPGAFTDIGGRRFVV 244 Query: 243 TRTRLVPPAAHPALQRAHGTQDKFFEGGKLYARCGDGNFLQI 284 R RL P A R+ ++A CGDG + + Sbjct: 245 ARARLATPGA----LRSDLPPGLHVSDNAVFAICGDGRAIAV 282 >ref|ZP_02883468.1| formyl transferase domain protein [Burkholderia graminis C4D1M] gb|EDT10900.1| formyl transferase domain protein [Burkholderia graminis C4D1M] Length = 311 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 197/283 (69%), Positives = 223/283 (78%), Gaps = 6/283 (2%) Query: 3 AVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGLCRDHGIACITPADP 62 AVVFAYH+VGVRCL+VLLARGV V+LVVTHEDS TENIWFGSVA + +HGI +TPADP Sbjct: 5 AVVFAYHNVGVRCLQVLLARGVDVALVVTHEDSPTENIWFGSVASVAAEHGIPVVTPADP 64 Query: 63 RSPQLLAQLQALQPDFLFSFYYRHMLPVEVLACARRGAYNMHGSLLPKYRGRVPINWAVL 122 +SP+L A + A +PDF+FSFYYRHMLPV+VLA A RGAYNMHGSLLPKYRGRVP NWAVL Sbjct: 65 KSPELRAAVSAARPDFIFSFYYRHMLPVDVLALAARGAYNMHGSLLPKYRGRVPTNWAVL 124 Query: 123 HGETETGATLHEMTVKPDAGAIVAQTAVPILPDDTAHEVFGKVVVAAEMTLWNVLPAMLA 182 HGETETGATLHEM KPDAGAIVAQT VPILPDDTA +VF KV VAAE TLW VLPA+LA Sbjct: 125 HGETETGATLHEMAAKPDAGAIVAQTPVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLA 184 Query: 183 GNTPNLPNDLSQGSYFSGRKPEDGRIDWRRTAGEVHNLVRAVAPPYPGAFEEIAGDKITV 242 G P+LPNDLS GSY+ GRKPEDGRIDW + A +V+NL+RAVAPPYPGAF ++ G + V Sbjct: 185 GEAPHLPNDLSHGSYYGGRKPEDGRIDWSQPAQQVYNLIRAVAPPYPGAFTDVGGRRFVV 244 Query: 243 TRTRLVPPAA-HPALQRAHGTQDKFFEGGKLYARCGDGNFLQI 284 R RL P A P L D ++A CGDG + I Sbjct: 245 ARARLATPGALRPDLPPGLHVSDN-----AVFAICGDGRAIAI 282 >ref|YP_004228330.1| formyl transferase domain-containing protein [Burkholderia sp. CCGE1001] gb|ADX55270.1| formyl transferase domain protein [Burkholderia sp. CCGE1001] Length = 311 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 194/282 (68%), Positives = 221/282 (78%), Gaps = 4/282 (1%) Query: 3 AVVFAYHDVGVRCLKVLLARGVQVSLVVTHEDSATENIWFGSVAGLCRDHGIACITPADP 62 AVVFAYH+VGVRCL+VLLARGV V+LVVTHEDS TENIWFGSVA + +HGI +TPADP Sbjct: 5 AVVFAYHNVGVRCLQVLLARGVDVALVVTHEDSPTENIWFGSVASVAAEHGIPVVTPADP 64 Query: 63 RSPQLLAQLQALQPDFLFSFYYRHMLPVEVLACARRGAYNMHGSLLPKYRGRVPINWAVL 122 SP+L A + A +PDF+FSFYYRHMLPV++LA A RGAYNMHGSLLPKYRGRVP NWAVL Sbjct: 65 TSPELRAAVSAARPDFIFSFYYRHMLPVDLLALAARGAYNMHGSLLPKYRGRVPTNWAVL 124 Query: 123 HGETETGATLHEMTVKPDAGAIVAQTAVPILPDDTAHEVFGKVVVAAEMTLWNVLPAMLA 182 HGETETGATLHEM KPDAGAI+AQT VPILPDDTA +VF KV VAAE TLW VLPA+LA Sbjct: 125 HGETETGATLHEMAAKPDAGAIIAQTPVPILPDDTAAQVFDKVTVAAEQTLWRVLPALLA 184 Query: 183 GNTPNLPNDLSQGSYFSGRKPEDGRIDWRRTAGEVHNLVRAVAPPYPGAFEEIAGDKITV 242 G P+LPNDLS GSY+ GRKPEDGRIDW + A +V+NL+RAVAPPYPGAF +I G + V Sbjct: 185 GEAPHLPNDLSHGSYYGGRKPEDGRIDWTQPAQQVYNLIRAVAPPYPGAFTDIGGRRFVV 244 Query: 243 TRTRLVPPAAHPALQRAHGTQDKFFEGGKLYARCGDGNFLQI 284 R RL P A R+ ++A CGDG + I Sbjct: 245 ARARLATPGA----LRSDLPPGLHVSDNAVFAICGDGRAIAI 282