BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1456.p (351 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775493.1| nucleoside-diphosphate-sugar epimerase [Herb... 735 0.0 ref|YP_004753115.1| polymyxin resistance protein ArnA_DH, UDP-gl... 712 0.0 ref|ZP_08275948.1| Polymyxin resistance protein ArnA-DH, UDP-glu... 684 0.0 ref|YP_003846477.1| NAD-dependent epimerase/dehydratase [Gallion... 647 0.0 ref|YP_003523998.1| NAD-dependent epimerase/dehydratase [Siderox... 627 e-178 >ref|YP_003775493.1| nucleoside-diphosphate-sugar epimerase [Herbaspirillum seropedicae SmR1] gb|ADJ63585.1| nucleoside-diphosphate-sugar epimerase protein [Herbaspirillum seropedicae SmR1] Length = 351 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 345/351 (98%), Positives = 348/351 (99%) Query: 1 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDILENEAYKSRMHFFEGDIT 60 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDILENEAYKSRMHFFEGDIT Sbjct: 1 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDILENEAYKSRMHFFEGDIT 60 Query: 61 INQEWVEYHVKKCDVILPLVAIATPSTYVNAPLRVFELDFEANLPIVRSAAKYKKHLVFP 120 INQEWVEYHVKKCDVILPLVAIATPSTYVNAPLRVFELDFEANLPIVRSAAKYKKHLVFP Sbjct: 61 INQEWVEYHVKKCDVILPLVAIATPSTYVNAPLRVFELDFEANLPIVRSAAKYKKHLVFP 120 Query: 121 STSEVYGMCHDEEFDPEESELICGPINKPRWIYSCAKQLMDRVIWGYGMEAGLNFTLFRP 180 STSEVYGMCHDEEFDPEESELICGPINKPRWIYSCAKQLMDRVIWGYGMEAGLNFTLFRP Sbjct: 121 STSEVYGMCHDEEFDPEESELICGPINKPRWIYSCAKQLMDRVIWGYGMEAGLNFTLFRP 180 Query: 181 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGQQKRAFTYIDDGIDALMKI 240 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGG QKRAFTYIDDGIDALMKI Sbjct: 181 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGLQKRAFTYIDDGIDALMKI 240 Query: 241 IANEGGVASGKIYNIGNPVNNYSIKDLADMMLKLAAEYPEYAETAKQVKLVETTSAAYYG 300 IANEGGVASGKIYNIGNPVNNYSIK+LADMMLKLAAEYPEYAETAKQVKLVETTSAAYYG Sbjct: 241 IANEGGVASGKIYNIGNPVNNYSIKELADMMLKLAAEYPEYAETAKQVKLVETTSAAYYG 300 Query: 301 KGYQDVQNRVPKITNTCDELNWAPKTTMADTLRNIFDAYRGQVAEARALVD 351 KGYQDVQNRVPKITNTC+ELNWAP TTMADTLRNIFDAYR QVAEARAL+D Sbjct: 301 KGYQDVQNRVPKITNTCEELNWAPTTTMADTLRNIFDAYRSQVAEARALMD 351 >ref|YP_004753115.1| polymyxin resistance protein ArnA_DH, UDP-glucuronic acid decarboxylase [Collimonas fungivorans Ter331] gb|AEK62292.1| Polymyxin resistance protein ArnA_DH, UDP-glucuronic acid decarboxylase [Collimonas fungivorans Ter331] Length = 351 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 330/351 (94%), Positives = 342/351 (97%) Query: 1 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDILENEAYKSRMHFFEGDIT 60 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRI D+L+NEAYKSRMHFFEGDIT Sbjct: 1 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRIRDLLDNEAYKSRMHFFEGDIT 60 Query: 61 INQEWVEYHVKKCDVILPLVAIATPSTYVNAPLRVFELDFEANLPIVRSAAKYKKHLVFP 120 IN+EWVEYHVKKCDVILPLVAIATPSTYV PLRVFELDFEANLPIVRSAAKY KHLVFP Sbjct: 61 INKEWVEYHVKKCDVILPLVAIATPSTYVKQPLRVFELDFEANLPIVRSAAKYGKHLVFP 120 Query: 121 STSEVYGMCHDEEFDPEESELICGPINKPRWIYSCAKQLMDRVIWGYGMEAGLNFTLFRP 180 STSEVYGMCHDEEFDPE+SELICGPINKPRWIYSCAKQLMDRVIWGYGME GLNFTLFRP Sbjct: 121 STSEVYGMCHDEEFDPEQSELICGPINKPRWIYSCAKQLMDRVIWGYGMEEGLNFTLFRP 180 Query: 181 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGQQKRAFTYIDDGIDALMKI 240 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGQQKRAFTYIDDGIDAL+KI Sbjct: 181 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGQQKRAFTYIDDGIDALIKI 240 Query: 241 IANEGGVASGKIYNIGNPVNNYSIKDLADMMLKLAAEYPEYAETAKQVKLVETTSAAYYG 300 IAN+ G+ASGKIYNIGNPVNNYSI+DLADMMLKLA EYPEYA++AK+VKLVETTSAAYYG Sbjct: 241 IANKDGIASGKIYNIGNPVNNYSIRDLADMMLKLATEYPEYADSAKKVKLVETTSAAYYG 300 Query: 301 KGYQDVQNRVPKITNTCDELNWAPKTTMADTLRNIFDAYRGQVAEARALVD 351 KGYQDVQNRVPKITNTCDELNW P TTMADTLRNIFDAYRGQVAEARAL+D Sbjct: 301 KGYQDVQNRVPKITNTCDELNWKPTTTMADTLRNIFDAYRGQVAEARALMD 351 >ref|ZP_08275948.1| Polymyxin resistance protein ArnA-DH, UDP-glucuronic acid decarboxylase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30572.1| Polymyxin resistance protein ArnA-DH, UDP-glucuronic acid decarboxylase [Oxalobacteraceae bacterium IMCC9480] Length = 350 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 316/351 (90%), Positives = 338/351 (96%), Gaps = 1/351 (0%) Query: 1 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDILENEAYKSRMHFFEGDIT 60 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMM+DRIT++L+N +KSRMHFFEGDIT Sbjct: 1 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMSDRITELLDNPDFKSRMHFFEGDIT 60 Query: 61 INQEWVEYHVKKCDVILPLVAIATPSTYVNAPLRVFELDFEANLPIVRSAAKYKKHLVFP 120 IN+EWVEYHVKKCDVILPLVAIATPSTYV PLRVFELDFEANLPIVRSAAKY KHLVFP Sbjct: 61 INKEWVEYHVKKCDVILPLVAIATPSTYVKQPLRVFELDFEANLPIVRSAAKYGKHLVFP 120 Query: 121 STSEVYGMCHDEEFDPEESELICGPINKPRWIYSCAKQLMDRVIWGYGMEAGLNFTLFRP 180 STSEVYGMCHD+EFDPEESELICGPINKPRWIYSC+KQLMDRVIWGYGME GLNFTLFRP Sbjct: 121 STSEVYGMCHDDEFDPEESELICGPINKPRWIYSCSKQLMDRVIWGYGME-GLNFTLFRP 179 Query: 181 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGQQKRAFTYIDDGIDALMKI 240 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGG+QKRAFTYIDDGIDAL+KI Sbjct: 180 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGEQKRAFTYIDDGIDALIKI 239 Query: 241 IANEGGVASGKIYNIGNPVNNYSIKDLADMMLKLAAEYPEYAETAKQVKLVETTSAAYYG 300 IAN+ G+A+GKIYNIGNPVNNYSI+DLA MML LAA+YPEYA++AK+V+L+ETTSAAYYG Sbjct: 240 IANKDGIATGKIYNIGNPVNNYSIRDLAAMMLTLAADYPEYADSAKKVELIETTSAAYYG 299 Query: 301 KGYQDVQNRVPKITNTCDELNWAPKTTMADTLRNIFDAYRGQVAEARALVD 351 KGYQDVQNRVPKITNTC+ELNW P TTM DTLRNIFDAYRGQVA ARAL+D Sbjct: 300 KGYQDVQNRVPKITNTCEELNWNPTTTMPDTLRNIFDAYRGQVAAARALMD 350 >ref|YP_003846477.1| NAD-dependent epimerase/dehydratase [Gallionella capsiferriformans ES-2] gb|ADL54713.1| NAD-dependent epimerase/dehydratase [Gallionella capsiferriformans ES-2] Length = 346 Score = 647 bits (1669), Expect = 0.0, Method: Composition-based stats. Identities = 301/351 (85%), Positives = 323/351 (92%), Gaps = 5/351 (1%) Query: 1 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDILENEAYKSRMHFFEGDIT 60 MKKVLILGVNGFIGHHLS +IL TTDW VYGMDM ++RI D++ +E R HFFEGDIT Sbjct: 1 MKKVLILGVNGFIGHHLSNKILATTDWEVYGMDMSSERIADLIGHE----RFHFFEGDIT 56 Query: 61 INQEWVEYHVKKCDVILPLVAIATPSTYVNAPLRVFELDFEANLPIVRSAAKYKKHLVFP 120 IN+EWVEYHVKKCDVILPLVAIATPSTYV PLRVFELDFEANLPIVR+A KY KHLVFP Sbjct: 57 INKEWVEYHVKKCDVILPLVAIATPSTYVKQPLRVFELDFEANLPIVRAAVKYGKHLVFP 116 Query: 121 STSEVYGMCHDEEFDPEESELICGPINKPRWIYSCAKQLMDRVIWGYGMEAGLNFTLFRP 180 STSEVYGMCHDEEFDP ESELICGPINKPRWIYSC+KQLMDRVIWGYGME GLNFTLFRP Sbjct: 117 STSEVYGMCHDEEFDPAESELICGPINKPRWIYSCSKQLMDRVIWGYGME-GLNFTLFRP 175 Query: 181 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGQQKRAFTYIDDGIDALMKI 240 FNWIGAGLDSIHTPKEGSSRVVTQF GHIVRGENISLVDGGQQKRAFTY+DDGI+ALMKI Sbjct: 176 FNWIGAGLDSIHTPKEGSSRVVTQFLGHIVRGENISLVDGGQQKRAFTYVDDGINALMKI 235 Query: 241 IANEGGVASGKIYNIGNPVNNYSIKDLADMMLKLAAEYPEYAETAKQVKLVETTSAAYYG 300 I N+ GVA+GKIYNIGNPVNN+SIKDLADMMLKLA EYPEY E+A++VK++ETT+AAYYG Sbjct: 236 IENKDGVATGKIYNIGNPVNNFSIKDLADMMLKLANEYPEYRESAQKVKILETTAAAYYG 295 Query: 301 KGYQDVQNRVPKITNTCDELNWAPKTTMADTLRNIFDAYRGQVAEARALVD 351 KGYQDVQNRVPKITNTC+EL WAP MADTLRNIFDAYRGQV EAR L+D Sbjct: 296 KGYQDVQNRVPKITNTCEELGWAPVINMADTLRNIFDAYRGQVGEARKLMD 346 >ref|YP_003523998.1| NAD-dependent epimerase/dehydratase [Sideroxydans lithotrophicus ES-1] gb|ADE11611.1| NAD-dependent epimerase/dehydratase [Sideroxydans lithotrophicus ES-1] Length = 347 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 291/351 (82%), Positives = 314/351 (89%), Gaps = 4/351 (1%) Query: 1 MKKVLILGVNGFIGHHLSKRILETTDWHVYGMDMMTDRITDILENEAYKSRMHFFEGDIT 60 MKKVLILGVNGFIGHHLS RIL TTDW VYGMDM TDRI+D++ K R HFFEGDIT Sbjct: 1 MKKVLILGVNGFIGHHLSNRILATTDWEVYGMDMSTDRISDLIG----KPRFHFFEGDIT 56 Query: 61 INQEWVEYHVKKCDVILPLVAIATPSTYVNAPLRVFELDFEANLPIVRSAAKYKKHLVFP 120 IN+EWVEYHVKKCDVILPLVAIATP+TYV PLRVFELDFEANLPIVR+ KY KHLVFP Sbjct: 57 INKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRACVKYNKHLVFP 116 Query: 121 STSEVYGMCHDEEFDPEESELICGPINKPRWIYSCAKQLMDRVIWGYGMEAGLNFTLFRP 180 STSEVYGMCHDEEFDP+ SELICGPINKPRWIYS +KQLMDRVIWGYGM+ LNFTLFRP Sbjct: 117 STSEVYGMCHDEEFDPDNSELICGPINKPRWIYSNSKQLMDRVIWGYGMQDNLNFTLFRP 176 Query: 181 FNWIGAGLDSIHTPKEGSSRVVTQFFGHIVRGENISLVDGGQQKRAFTYIDDGIDALMKI 240 FNWIGAGLDSI+TPKEGSSRVVTQF GHI+RG NISLVDGG QKRAFTYIDDGIDALMKI Sbjct: 177 FNWIGAGLDSINTPKEGSSRVVTQFLGHIIRGNNISLVDGGHQKRAFTYIDDGIDALMKI 236 Query: 241 IANEGGVASGKIYNIGNPVNNYSIKDLADMMLKLAAEYPEYAETAKQVKLVETTSAAYYG 300 I N+ G+A+GKIYNIGNP NN+SI+DLADMMLKLA EYPEY ++AK VK+VETTS AYYG Sbjct: 237 IDNKNGIATGKIYNIGNPSNNHSIRDLADMMLKLANEYPEYKDSAKNVKIVETTSDAYYG 296 Query: 301 KGYQDVQNRVPKITNTCDELNWAPKTTMADTLRNIFDAYRGQVAEARALVD 351 KGYQDVQNRVPKITNTC+EL W P TTM DTLR I+DAYR Q+AEA+ LVD Sbjct: 297 KGYQDVQNRVPKITNTCEELGWKPTTTMPDTLRKIYDAYRTQIAEAKGLVD 347