BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1447.p         (150 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775485.1| 50S ribosomal protein L9 [Herbaspirillum ser...   220   5e-56
ref|YP_004753133.1| 50S ribosomal protein L9p [Collimonas fungiv...   197   3e-49
ref|YP_003604949.1| ribosomal protein L9 [Burkholderia sp. CCGE1...   197   6e-49
ref|YP_003906764.1| 50S ribosomal protein L9 [Burkholderia sp. C...   179   2e-43
ref|ZP_02883458.1| ribosomal protein L9 [Burkholderia graminis C...   179   2e-43

>ref|YP_003775485.1| 50S ribosomal protein L9 [Herbaspirillum seropedicae SmR1]
 emb|CAM32641.1| 50S ribosomal subunit protein L9 [Herbaspirillum seropedicae]
 gb|ADJ63577.1| 50S ribosomal subunit L9 protein [Herbaspirillum seropedicae SmR1]
          Length = 150

 Score =  220 bits (561), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 146/150 (97%), Positives = 148/150 (98%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRADLEKAAAE 60
           MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRA+LEKAAAE
Sbjct: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRAELEKAAAE 60

Query: 61  KLAAAQAQGEKLTGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKSQVRLPNGP 120
           KLAAAQAQGEKL GATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEK+QVRLPNGP
Sbjct: 61  KLAAAQAQGEKLAGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKAQVRLPNGP 120

Query: 121 LKTVGEHPVSVALHTDVVVDVTIAVKGEQA 150
           LK VGEHPVSVALHTDVVVDVTIAVKGEQA
Sbjct: 121 LKIVGEHPVSVALHTDVVVDVTIAVKGEQA 150


>ref|YP_004753133.1| 50S ribosomal protein L9p [Collimonas fungivorans Ter331]
 gb|AEK62310.1| LSU ribosomal protein L9p [Collimonas fungivorans Ter331]
          Length = 150

 Score =  197 bits (502), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 124/149 (83%), Positives = 135/149 (90%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRADLEKAAAE 60
           MQVILLEK+VNLG LG+VVRVKDG+ARNFLIPQR ARRAT  AIAEFEAKRADLE AAA 
Sbjct: 1   MQVILLEKVVNLGNLGEVVRVKDGYARNFLIPQRMARRATTTAIAEFEAKRADLETAAAA 60

Query: 61  KLAAAQAQGEKLTGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKSQVRLPNGP 120
           KLA AQ QGEKL+G TV++SQK+GVDGRLFGSVTNFDIAEAL K+GFAVEK+QVRLPNGP
Sbjct: 61  KLAVAQGQGEKLSGLTVQISQKSGVDGRLFGSVTNFDIAEALTKQGFAVEKAQVRLPNGP 120

Query: 121 LKTVGEHPVSVALHTDVVVDVTIAVKGEQ 149
           LKT GEHPV+VALHTDVVVD+ IAV GE 
Sbjct: 121 LKTTGEHPVAVALHTDVVVDIVIAVIGEH 149


>ref|YP_003604949.1| ribosomal protein L9 [Burkholderia sp. CCGE1002]
 gb|ADG15438.1| ribosomal protein L9 [Burkholderia sp. CCGE1002]
          Length = 150

 Score =  197 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 117/149 (78%), Positives = 135/149 (90%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRADLEKAAAE 60
           MQ+ILLEK+VNLG LGD+V+VKDG+ARNFLIP ++ARRAT  A+AEFE +RA+LEK AAE
Sbjct: 1   MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPNKQARRATKEALAEFEVRRAELEKVAAE 60

Query: 61  KLAAAQAQGEKLTGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKSQVRLPNGP 120
           KLAAAQAQGEKL G TV+++QKAGVDGRLFGSVTN DIAEALGK+GFAVEK+QVRLP GP
Sbjct: 61  KLAAAQAQGEKLAGQTVQINQKAGVDGRLFGSVTNADIAEALGKQGFAVEKAQVRLPEGP 120

Query: 121 LKTVGEHPVSVALHTDVVVDVTIAVKGEQ 149
           LK VGEHPV V+LHTDV+VDVT+AV GE 
Sbjct: 121 LKMVGEHPVQVSLHTDVLVDVTVAVIGEH 149


>ref|YP_003906764.1| 50S ribosomal protein L9 [Burkholderia sp. CCGE1003]
 ref|YP_004228341.1| 50S ribosomal protein L9 [Burkholderia sp. CCGE1001]
 gb|ADN57473.1| ribosomal protein L9 [Burkholderia sp. CCGE1003]
 gb|ADX55281.1| ribosomal protein L9 [Burkholderia sp. CCGE1001]
          Length = 150

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 105/134 (78%), Positives = 122/134 (91%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRADLEKAAAE 60
           MQ+ILLEK+VNLG LGD+V+VKDG+ARNFLIP ++ARRAT  A+AEFE +RA+LEK AAE
Sbjct: 1   MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPNKQARRATKEALAEFEVRRAELEKIAAE 60

Query: 61  KLAAAQAQGEKLTGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKSQVRLPNGP 120
           KLAAAQAQGEKL G+TV++ QKAGVDGRLFGSVTN DIAEALGK+GFAVEK+QVRLP GP
Sbjct: 61  KLAAAQAQGEKLAGSTVQIGQKAGVDGRLFGSVTNADIAEALGKQGFAVEKAQVRLPEGP 120

Query: 121 LKTVGEHPVSVALH 134
           LK VG+HPV V+LH
Sbjct: 121 LKMVGDHPVQVSLH 134


>ref|ZP_02883458.1| ribosomal protein L9 [Burkholderia graminis C4D1M]
 gb|EDT10890.1| ribosomal protein L9 [Burkholderia graminis C4D1M]
          Length = 150

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/134 (77%), Positives = 122/134 (91%)

Query: 1   MQVILLEKIVNLGGLGDVVRVKDGFARNFLIPQRKARRATDAAIAEFEAKRADLEKAAAE 60
           MQ+ILLEK+VNLG LGD+V+VKDG+ARNFLIP ++ARRAT  A+AEFE +RA+LEK AAE
Sbjct: 1   MQIILLEKVVNLGNLGDIVKVKDGYARNFLIPNKQARRATKEALAEFEVRRAELEKIAAE 60

Query: 61  KLAAAQAQGEKLTGATVEVSQKAGVDGRLFGSVTNFDIAEALGKKGFAVEKSQVRLPNGP 120
           KLAAAQAQGEKL G+TV++ QKAGVDGRLFGSVTN DIAEALGK+GFAVEK+QVRLP GP
Sbjct: 61  KLAAAQAQGEKLAGSTVQIGQKAGVDGRLFGSVTNADIAEALGKQGFAVEKAQVRLPEGP 120

Query: 121 LKTVGEHPVSVALH 134
           LK VG+HP+ V+LH
Sbjct: 121 LKLVGDHPIQVSLH 134