BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1446.p         (94 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775484.1| 30S ribosomal protein S18 [Herbaspirillum se...   164   6e-39
ref|YP_004753134.1| 30S ribosomal protein S18p [Collimonas fungi...   154   6e-36
ref|YP_001100420.1| 30S ribosomal protein S18 [Herminiimonas ars...   152   1e-35
ref|YP_001352993.1| 30S ribosomal protein S18 [Janthinobacterium...   152   2e-35
ref|ZP_08275956.1| SSU ribosomal protein S18p [Oxalobacteraceae ...   147   8e-34

>ref|YP_003775484.1| 30S ribosomal protein S18 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63576.1| 30S ribosomal subunit S18 protein [Herbaspirillum seropedicae
          SmR1]
          Length = 94

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 94/94 (100%), Positives = 94/94 (100%)

Query: 1  MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60
          MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA
Sbjct: 1  MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60

Query: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA
Sbjct: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94


>ref|YP_004753134.1| 30S ribosomal protein S18p [Collimonas fungivorans Ter331]
 gb|AEK62311.1| SSU ribosomal protein S18p [Collimonas fungivorans Ter331]
          Length = 94

 Score =  154 bits (388), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 88/94 (93%), Positives = 90/94 (95%)

Query: 1  MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60
          MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAA V  VDYKD+DTLKDFVQENGKIMPA
Sbjct: 1  MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAAHVASVDYKDIDTLKDFVQENGKIMPA 60

Query: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          RLTGTKA YQRQVDTAIKRAR+LALLPYTDLHNA
Sbjct: 61 RLTGTKAIYQRQVDTAIKRARFLALLPYTDLHNA 94


>ref|YP_001100420.1| 30S ribosomal protein S18 [Herminiimonas arsenicoxydans]
 emb|CAL62297.1| 30S ribosomal protein S18 [Herminiimonas arsenicoxydans]
          Length = 94

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/94 (94%), Positives = 91/94 (96%)

Query: 1  MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60
          MAFGKKFDKSKLK KR+QQNPLFKRKKFCRFTAA VEQVDYKDVDTLKDFVQENGKIMPA
Sbjct: 1  MAFGKKFDKSKLKEKRKQQNPLFKRKKFCRFTAAHVEQVDYKDVDTLKDFVQENGKIMPA 60

Query: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          RLTGTKA YQRQVDTAIKRAR+LALLPYTDLHNA
Sbjct: 61 RLTGTKAIYQRQVDTAIKRARFLALLPYTDLHNA 94


>ref|YP_001352993.1| 30S ribosomal protein S18 [Janthinobacterium sp. Marseille]
 gb|ABR91651.1| small subunit ribosomal protein S18 [Janthinobacterium sp.
          Marseille]
          Length = 94

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/94 (94%), Positives = 91/94 (96%)

Query: 1  MAFGKKFDKSKLKNKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIMPA 60
          MAFGKKFDK+KLK KR+QQNPLFKRKKFCRFTAA VEQVDYKDVDTLKDFVQENGKIMPA
Sbjct: 1  MAFGKKFDKNKLKEKRKQQNPLFKRKKFCRFTAAHVEQVDYKDVDTLKDFVQENGKIMPA 60

Query: 61 RLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          RLTGTKA YQRQVDTAIKRARYLALLPYTDLHNA
Sbjct: 61 RLTGTKAIYQRQVDTAIKRARYLALLPYTDLHNA 94


>ref|ZP_08275956.1| SSU ribosomal protein S18p [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30580.1| SSU ribosomal protein S18p [Oxalobacteraceae bacterium IMCC9480]
          Length = 96

 Score =  147 bits (370), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 87/96 (90%), Positives = 92/96 (95%), Gaps = 2/96 (2%)

Query: 1  MAFGKKFDKSKLK--NKRQQQNPLFKRKKFCRFTAAGVEQVDYKDVDTLKDFVQENGKIM 58
          MAFGKKFDK+KLK   KR+QQNPLFKRKKFCRFTAA VEQVDYKDVDTLKDFVQENGKIM
Sbjct: 1  MAFGKKFDKNKLKLKEKRKQQNPLFKRKKFCRFTAAHVEQVDYKDVDTLKDFVQENGKIM 60

Query: 59 PARLTGTKAHYQRQVDTAIKRARYLALLPYTDLHNA 94
          PARLTGT+AHYQRQVDTAIKRAR+LALLPYTDLH+A
Sbjct: 61 PARLTGTRAHYQRQVDTAIKRARFLALLPYTDLHHA 96