BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1445.p         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775482.1| 30S ribosomal protein S6 [Herbaspirillum ser...   228   2e-58
ref|YP_004753136.1| 30S ribosomal protein S6p [Collimonas fungiv...   220   6e-56
ref|YP_001100422.1| 30S ribosomal protein S6 [Herminiimonas arse...   209   8e-53
ref|YP_001352991.1| 30S ribosomal protein S6 [Janthinobacterium ...   209   1e-52
ref|ZP_08275958.1| SSU ribosomal protein S6p [Oxalobacteraceae b...   196   1e-48

>ref|YP_003775482.1| 30S ribosomal protein S6 [Herbaspirillum seropedicae SmR1]
 emb|CAM32642.1| 30S ribosomal subunit protein S6 [Herbaspirillum seropedicae]
 gb|ADJ63574.1| 30S ribosomal subunit S6 protein [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTTRGGKVHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVFIVHPDQSEQVPAMIERYKGIVTTRGGKVHRVEDWGRRQLAYQIQKLAKAHYV
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTTRGGKVHRVEDWGRRQLAYQIQKLAKAHYV 60

Query: 61  CLNIEVDSETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAAKSRTEAPA 120
           CLNIEVDSETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAAKSRTEAPA
Sbjct: 61  CLNIEVDSETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAAKSRTEAPA 120

Query: 121 A 121
           A
Sbjct: 121 A 121


>ref|YP_004753136.1| 30S ribosomal protein S6p [Collimonas fungivorans Ter331]
 gb|AEK62313.1| SSU ribosomal protein S6p [Collimonas fungivorans Ter331]
          Length = 134

 Score =  220 bits (560), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 115/122 (94%), Positives = 118/122 (96%), Gaps = 1/122 (0%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTTRGGKVHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVFIVHPDQSEQVPAMIERYKGIVTTRGG VHRVEDWGRRQLAY IQKLAKAHYV
Sbjct: 13  MRHYEIVFIVHPDQSEQVPAMIERYKGIVTTRGGTVHRVEDWGRRQLAYLIQKLAKAHYV 72

Query: 61  CLNIEVDSETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAAKS-RTEAP 119
           CLNIE DSETLAEIETGFKFNDAVLRHLTVK+KKAETGPSP++KAVQKEDAAKS RTEAP
Sbjct: 73  CLNIECDSETLAEIETGFKFNDAVLRHLTVKLKKAETGPSPMMKAVQKEDAAKSHRTEAP 132

Query: 120 AA 121
           AA
Sbjct: 133 AA 134


>ref|YP_001100422.1| 30S ribosomal protein S6 [Herminiimonas arsenicoxydans]
 sp|A4G712|RS6_HERAR RecName: Full=30S ribosomal protein S6
 emb|CAL62299.1| 30S ribosomal subunit protein S6 [Herminiimonas arsenicoxydans]
          Length = 122

 Score =  209 bits (533), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 111/122 (90%), Positives = 114/122 (93%), Gaps = 1/122 (0%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTTRGGKVHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVFIVHPDQSEQVPAMIERYKGIVT RGG VHRVEDWGRRQ+AY IQKLAKAHYV
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTARGGVVHRVEDWGRRQMAYLIQKLAKAHYV 60

Query: 61  CLNIEVDSETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAAKS-RTEAP 119
           CLNIE D ETL EIETGFKFNDAVLRHLTVKMKKAET PSP++KAVQKEDAAKS RTEAP
Sbjct: 61  CLNIECDGETLTEIETGFKFNDAVLRHLTVKMKKAETAPSPMMKAVQKEDAAKSHRTEAP 120

Query: 120 AA 121
           AA
Sbjct: 121 AA 122


>ref|YP_001352991.1| 30S ribosomal protein S6 [Janthinobacterium sp. Marseille]
 sp|A6SXJ4|RS6_JANMA RecName: Full=30S ribosomal protein S6
 gb|ABR90148.1| small subunit ribosomal protein S6 [Janthinobacterium sp.
           Marseille]
          Length = 122

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 110/122 (90%), Positives = 114/122 (93%), Gaps = 1/122 (0%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTTRGGKVHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVFIVHPDQSEQVPAMIERYKGIVT RGG +HRVEDWGRRQ+AY IQKLAKAHYV
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTARGGVIHRVEDWGRRQMAYMIQKLAKAHYV 60

Query: 61  CLNIEVDSETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAAKS-RTEAP 119
           CLNIE D ETLAEIETGFKFNDAVLRHLTVKMKKAET PSP++KAVQKEDAAKS R EAP
Sbjct: 61  CLNIECDGETLAEIETGFKFNDAVLRHLTVKMKKAETAPSPMMKAVQKEDAAKSHRAEAP 120

Query: 120 AA 121
           AA
Sbjct: 121 AA 122


>ref|ZP_08275958.1| SSU ribosomal protein S6p [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30582.1| SSU ribosomal protein S6p [Oxalobacteraceae bacterium IMCC9480]
          Length = 122

 Score =  196 bits (497), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 103/122 (84%), Positives = 111/122 (90%), Gaps = 1/122 (0%)

Query: 1   MRHYEIVFIVHPDQSEQVPAMIERYKGIVTTRGGKVHRVEDWGRRQLAYQIQKLAKAHYV 60
           MRHYEIVFIVHPDQSEQVPAMIERYK +V    G VHRVEDWGRRQ+AY IQKLAKAHYV
Sbjct: 1   MRHYEIVFIVHPDQSEQVPAMIERYKAVVAAHSGVVHRVEDWGRRQMAYLIQKLAKAHYV 60

Query: 61  CLNIEVDSETLAEIETGFKFNDAVLRHLTVKMKKAETGPSPILKAVQKEDAAKS-RTEAP 119
           C+NIE D+ETL EIETGFKFNDAVLRHLTVK+KKAET PSP++KAVQKEDAAKS R+EAP
Sbjct: 61  CMNIECDNETLVEIETGFKFNDAVLRHLTVKLKKAETAPSPMMKAVQKEDAAKSHRSEAP 120

Query: 120 AA 121
           AA
Sbjct: 121 AA 122