BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1441.p         (119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775477.1| flagellin protein [Herbaspirillum seropedica...   142   2e-32
ref|YP_546093.1| flagellar protein FlaG protein [Methylobacillus...    69   2e-10
ref|YP_004039194.1| flagellar protein flag protein [Methylovorus...    67   9e-10
ref|YP_003050524.1| flagellar protein FlaG protein [Methylovorus...    67   1e-09
ref|YP_004694184.1| flagellar protein FlaG protein [Nitrosomonas...    66   2e-09

>ref|YP_003775477.1| flagellin protein [Herbaspirillum seropedicae SmR1]
 emb|CAP19678.1| flagellar protein [Herbaspirillum seropedicae]
 gb|ADJ63569.1| flagellin protein [Herbaspirillum seropedicae SmR1]
          Length = 119

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 103/119 (86%), Positives = 110/119 (92%)

Query: 1   MSIAPLNITAAGDSGTAYAAPKTAEKPDPVVSTVAPAATPEARRATESEVNDAVGKLNDF 60
           MSIAPLNI +A DSGTAYA PKTA KPDPVVSTVAP A P+ARRAT+SEVNDAV KLNDF
Sbjct: 1   MSIAPLNIASAADSGTAYALPKTAAKPDPVVSTVAPVAAPDARRATDSEVNDAVSKLNDF 60

Query: 61  AAANAAALNFSKDQDTGKTIIKVVDTATDTVIRQIPSEEAIAIAKSIDKMQGLLIKEKA 119
           AA+NAAALNFSKD+DTGKTI+KV+DTATDTVIRQIPSEEAIAIAKSIDKMQGLLI  KA
Sbjct: 61  AASNAAALNFSKDEDTGKTIVKVMDTATDTVIRQIPSEEAIAIAKSIDKMQGLLINHKA 119


>ref|YP_546093.1| flagellar protein FlaG protein [Methylobacillus flagellatus KT]
 gb|ABE50252.1| flagellar protein FlaG protein [Methylobacillus flagellatus KT]
          Length = 117

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/117 (35%), Positives = 75/117 (64%)

Query: 3   IAPLNITAAGDSGTAYAAPKTAEKPDPVVSTVAPAATPEARRATESEVNDAVGKLNDFAA 62
           +A  NI A   +G+  +  + A    P+    +  A  +A  A++++V  AV ++N+F +
Sbjct: 1   MAITNIEAYSQAGSLASTVRNAGPAVPLPGAGSKEAEQQASVASDADVQSAVEQINEFIS 60

Query: 63  ANAAALNFSKDQDTGKTIIKVVDTATDTVIRQIPSEEAIAIAKSIDKMQGLLIKEKA 119
               ++ FS D D+G+ ++KVVD+ T  V+RQIP+EE +AI+K++DK+QGL+I++ A
Sbjct: 61  PIMQSIQFSTDADSGRVVVKVVDSETQKVLRQIPNEEVLAISKTLDKLQGLIIRQTA 117


>ref|YP_004039194.1| flagellar protein flag protein [Methylovorus sp. MP688]
 gb|ADQ83958.1| flagellar protein FlaG protein [Methylovorus sp. MP688]
          Length = 120

 Score = 67.0 bits (162), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 52/124 (41%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 1   MSIAPLNITAAGDSGTAYAAPKTAEKPDPVVSTVAPAATPEARRATESEVND-----AVG 55
           MSIA +N    G    A ++P+         +  APA T  A+  T    +D     AV 
Sbjct: 1   MSIANINAYTYG----AGSSPQGLGGGRAAATVSAPAQTTAAQNDTNKSASDKDIAAAVK 56

Query: 56  KLNDFAAANAAALNFSKDQDTGKTIIKVVDTATDTVIRQIPSEEAIAIAKSIDKMQGLLI 115
            LN F +  A ++ FS DQD+GK ++KVVDT T+ V+RQIP+EE +AI+K++DK+QGL+I
Sbjct: 57  TLNSFISPVAQSVQFSMDQDSGKVVVKVVDTETNKVLRQIPNEEVLAISKTLDKLQGLVI 116

Query: 116 KEKA 119
           K+ A
Sbjct: 117 KQTA 120


>ref|YP_003050524.1| flagellar protein FlaG protein [Methylovorus glucosetrophus SIP3-4]
 gb|ACT49997.1| flagellar protein FlaG protein [Methylovorus glucosetrophus SIP3-4]
          Length = 120

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 51/124 (41%), Positives = 77/124 (62%), Gaps = 9/124 (7%)

Query: 1   MSIAPLNITAAGDSGTAYAAPKTAEKPDPVVSTVAPAATPEA-----RRATESEVNDAVG 55
           MSIA +N    G    A ++P+         +  APA T  A     + A++ ++  AV 
Sbjct: 1   MSIANINAYTYG----AGSSPQGLGGGRAAATVSAPAQTTAAQNDTNKTASDKDIAAAVK 56

Query: 56  KLNDFAAANAAALNFSKDQDTGKTIIKVVDTATDTVIRQIPSEEAIAIAKSIDKMQGLLI 115
            LN F +  A ++ FS DQD+GK ++KVVDT T+ V+RQIP+EE +AI+K++DK+QGL+I
Sbjct: 57  TLNSFISPVAQSVQFSMDQDSGKVVVKVVDTETNKVLRQIPNEEVLAISKTLDKLQGLVI 116

Query: 116 KEKA 119
           K+ A
Sbjct: 117 KQTA 120


>ref|YP_004694184.1| flagellar protein FlaG protein [Nitrosomonas sp. Is79A3]
 gb|AEJ00785.1| flagellar protein FlaG protein [Nitrosomonas sp. Is79A3]
          Length = 123

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 5/102 (4%)

Query: 19  AAPKTAEKPDPVVSTVAPAATPEARRA-TESEVNDAVGKLNDFAAANAAALNFSKDQDTG 77
           + P T   P P     +PA +    +  +E ++  AV K+       A  L FS D+DTG
Sbjct: 26  SVPNTDNAPSPA----SPARSKVGNKPESEEQIKQAVQKIQGAVDNLAHNLRFSIDEDTG 81

Query: 78  KTIIKVVDTATDTVIRQIPSEEAIAIAKSIDKMQGLLIKEKA 119
           KTIIKV+D  T+ VIRQIP+EEA+ +A+++DK+QGLL  +KA
Sbjct: 82  KTIIKVMDVHTEEVIRQIPTEEAVQLARTLDKVQGLLFNDKA 123