BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1438.p         (153 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775474.1| flagellin-specific chaperone FliS [Herbaspir...   236   9e-61
ref|ZP_08276219.1| Flagellar biosynthesis protein fliS [Oxalobac...   158   2e-37
ref|YP_001353137.1| FliS flagellar protein [Janthinobacterium sp...   152   2e-35
ref|YP_001100144.1| flagellar biosynthesis repressor [Herminiimo...   141   3e-32
ref|ZP_08255910.1| flagellar protein FliS [Plautia stali symbiont]    137   4e-31

>ref|YP_003775474.1| flagellin-specific chaperone FliS [Herbaspirillum seropedicae SmR1]
 gb|ADJ63566.1| flagellin-specific chaperone FliS protein [Herbaspirillum
           seropedicae SmR1]
          Length = 154

 Score =  236 bits (602), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 134/156 (85%), Positives = 139/156 (89%), Gaps = 5/156 (3%)

Query: 1   MFGSMKRGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESI 60
           MFG+MKRGANAYANIGVETGV+AASPHKLITMLFDGALVAIALGKK M EGNIKDKGESI
Sbjct: 1   MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI 60

Query: 61  TKAILIIDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLDDI 120
           TKAILI+DNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDE+H LL+DI
Sbjct: 61  TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI 120

Query: 121 RSAWEQIGPN---AVQSAAPPMAMTQDVSLSSFAKA 153
           RSAWEQIGPN   A   AAP  A T   S  SFAKA
Sbjct: 121 RSAWEQIGPNGQPASMQAAP--APTAAFSQPSFAKA 154


>ref|ZP_08276219.1| Flagellar biosynthesis protein fliS [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30308.1| Flagellar biosynthesis protein fliS [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 156

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/128 (64%), Positives = 103/128 (80%)

Query: 1   MFGSMKRGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESI 60
           MFG   RGANAYAN+ +ETGV +ASPHKLI MLFDGALVA+A  ++ M +GNI+ KG+SI
Sbjct: 1   MFGKSSRGANAYANVSIETGVTSASPHKLIVMLFDGALVAVATAEQQMKDGNIQAKGKSI 60

Query: 61  TKAILIIDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLDDI 120
           +KAI IIDNGLRASL+K+VGG++A +LD+LY YMS RL  AN  N P IL E+H LL D+
Sbjct: 61  SKAISIIDNGLRASLDKKVGGQIAESLDALYAYMSNRLLVANLKNQPEILQEVHTLLMDL 120

Query: 121 RSAWEQIG 128
           +SAW+ IG
Sbjct: 121 KSAWDAIG 128


>ref|YP_001353137.1| FliS flagellar protein [Janthinobacterium sp. Marseille]
 gb|ABR89183.1| FliS flagellar protein [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/150 (54%), Positives = 109/150 (72%), Gaps = 1/150 (0%)

Query: 1   MFGSMKRGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESI 60
           MFGS + GANAYA +G+ETGVIAA+PHKLI MLF+G  +A+    + M  GNI +KG++I
Sbjct: 1   MFGSPQSGANAYAKVGMETGVIAANPHKLIIMLFEGVQIALNNALQQMQAGNIPEKGKAI 60

Query: 61  TKAILIIDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLDDI 120
           +K ILII+NGLRASL+K VGGE+A+NLD+LYEYM  RL  AN  N+  I+ E+  LL+DI
Sbjct: 61  SKGILIIENGLRASLDKSVGGEIAINLDALYEYMVGRLLLANLNNDAEIIHEVQTLLNDI 120

Query: 121 RSAWEQIGPNAVQSAAPPMAMTQDVSLSSF 150
           +SAWE+I P   +  AP   +   +  SS+
Sbjct: 121 KSAWEEIAPKTAE-PAPVTGLPGQIQASSY 149


>ref|YP_001100144.1| flagellar biosynthesis repressor [Herminiimonas arsenicoxydans]
 emb|CAL62020.1| Flagellar protein [Herminiimonas arsenicoxydans]
          Length = 161

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/129 (62%), Positives = 100/129 (77%)

Query: 1   MFGSMKRGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESI 60
           MFGSMK GA+AYA +G+ETGVIAA+PHKLI MLF+G  +A+    + M  G+I +KG++I
Sbjct: 1   MFGSMKNGASAYAKVGIETGVIAANPHKLIVMLFEGVQIALNQAAQHMQSGHIAEKGKAI 60

Query: 61  TKAILIIDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLDDI 120
           +KAI IIDNGLRASL+K  GGE+A+NLDSLYEYMS RL  AN  N+ A+L E+  LL DI
Sbjct: 61  SKAISIIDNGLRASLDKSTGGEIAINLDSLYEYMSNRLLLANLNNDAAVLQEVQTLLHDI 120

Query: 121 RSAWEQIGP 129
           + AWE I P
Sbjct: 121 KGAWESIVP 129


>ref|ZP_08255910.1| flagellar protein FliS [Plautia stali symbiont]
          Length = 133

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/130 (53%), Positives = 96/130 (73%)

Query: 6   KRGANAYANIGVETGVIAASPHKLITMLFDGALVAIALGKKSMGEGNIKDKGESITKAIL 65
           K G  AYA +G+E+ +++ASPH+L+ +LFDGAL A+      M +G+I  KG++++KAI 
Sbjct: 4   KSGTQAYAQVGLESAMLSASPHQLVVLLFDGALSAMKKATILMDQGDIPGKGQALSKAIN 63

Query: 66  IIDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEIHGLLDDIRSAWE 125
           II NGLR  LN E GGE++ NLD+LYEYM+RRL EAN  N+PA + E+  LL +I  AW+
Sbjct: 64  IITNGLRTGLNHEAGGEISANLDNLYEYMTRRLLEANLHNDPAAIAEVERLLSNIADAWK 123

Query: 126 QIGPNAVQSA 135
           QIGP+AVQ A
Sbjct: 124 QIGPHAVQEA 133