BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1436.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775473.1| flagellar protein FliT [Herbaspirillum serop...   165   3e-39
ref|YP_001353136.1| FliT flagellar protein [Janthinobacterium sp...   108   4e-22
ref|YP_001100145.1| putative flagellar synthesis protein [Hermin...   105   2e-21
ref|ZP_08276220.1| Flagellar biosynthesis protein fliT [Oxalobac...    95   3e-18
ref|YP_003048359.1| putative flagellar synthesis protein [Methyl...    89   2e-16

>ref|YP_003775473.1| flagellar protein FliT [Herbaspirillum seropedicae SmR1]
 gb|ADJ63565.1| flagellar FliT protein [Herbaspirillum seropedicae SmR1]
          Length = 109

 Score =  165 bits (417), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/109 (82%), Positives = 102/109 (93%)

Query: 4   MNGDDVIALYESISQLTNEMLSAARAGDWDLLAALEAQCGKHIASLRDSEENIALPEPLR 63
           MNGD+VIA+YESIS+LT+EML+AARA DW+LLA LE QCGKHI++LR+ EE+I+L + LR
Sbjct: 1   MNGDEVIAIYESISRLTDEMLAAARAADWELLATLETQCGKHISNLRNCEESISLSDELR 60

Query: 64  HRKVDIIKKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTYGMGS 112
            RKVDIIKKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTYGMGS
Sbjct: 61  SRKVDIIKKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTYGMGS 109


>ref|YP_001353136.1| FliT flagellar protein [Janthinobacterium sp. Marseille]
 gb|ABR88810.1| FliT flagellar protein [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  108 bits (269), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query: 4   MNGDDVIALYESISQLTNEMLSAARAGDWDLLAALEAQCGKHIASLRDSEENIALPEPLR 63
           MN  ++I LYE+++ +T++ML+AAR GDW+ L ALE +C   ++ L+  E  +AL    R
Sbjct: 2   MNEQEIICLYENVATITDQMLAAARVGDWEELTALEQRCAAQVSMLKSGETPVALTGAER 61

Query: 64  HRKVDIIKKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTYGMG 111
            RKV+IIKKIL DDR+IRN+TEP + KLS LI S  TE+KL + YG G
Sbjct: 62  ERKVEIIKKILADDREIRNITEPWMAKLSMLINSTGTERKLNHAYGAG 109


>ref|YP_001100145.1| putative flagellar synthesis protein [Herminiimonas arsenicoxydans]
 emb|CAL62021.1| putative flagellar protein FliT [Herminiimonas arsenicoxydans]
          Length = 108

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/106 (51%), Positives = 75/106 (70%)

Query: 4   MNGDDVIALYESISQLTNEMLSAARAGDWDLLAALEAQCGKHIASLRDSEENIALPEPLR 63
           MN  +VI LYE+++ +T +MLSAAR GDWD LAALE +C   ++ L+  E  + L   +R
Sbjct: 1   MNEQEVIHLYENVATITQQMLSAAREGDWDRLAALETRCSDQVSILKSGEPPVPLTGVVR 60

Query: 64  HRKVDIIKKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTYG 109
            RKV IIKKIL+DDR+IRNLT+P + +LS +I S  TE++L   YG
Sbjct: 61  ERKVAIIKKILDDDREIRNLTQPWMEQLSRMINSTGTERRLNQAYG 106


>ref|ZP_08276220.1| Flagellar biosynthesis protein fliT [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF30309.1| Flagellar biosynthesis protein fliT [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 111

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 50/106 (47%), Positives = 72/106 (67%)

Query: 4   MNGDDVIALYESISQLTNEMLSAARAGDWDLLAALEAQCGKHIASLRDSEENIALPEPLR 63
           MN  +V++LYE++S++T EML AA+  DW+ L  LE++   H++SL+  EE  AL    R
Sbjct: 1   MNSQEVLSLYETVSEITGEMLVAAQKRDWEQLVVLESRVAGHVSSLKTGEEPTALTGATR 60

Query: 64  HRKVDIIKKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTYG 109
            RKV II+KIL  DR IR++TEP + +L+ L+ S  TE+KL   YG
Sbjct: 61  LRKVQIIQKILAHDRLIRDITEPWMAELAILMNSTGTERKLSQAYG 106


>ref|YP_003048359.1| putative flagellar synthesis protein [Methylotenera mobilis JLW8]
 gb|ACT47832.1| putative flagellar synthesis (flagellar regulon) [Methylotenera
           mobilis JLW8]
          Length = 107

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 48/105 (45%), Positives = 67/105 (63%)

Query: 4   MNGDDVIALYESISQLTNEMLSAARAGDWDLLAALEAQCGKHIASLRDSEENIALPEPLR 63
           M   + I LYE+++++  +ML AA+  DWD L  LEA C +H+A+L+  E    LP    
Sbjct: 1   MEYQNTIQLYETVAKIMQQMLLAAKMEDWDKLTELEAFCAQHVATLKTMENGQPLPNDAL 60

Query: 64  HRKVDIIKKILEDDRDIRNLTEPGLRKLSALIQSNQTEQKLLNTY 108
            RKV  IK IL DDR+IRNL  P + KL+AL+ +NQTE++L   Y
Sbjct: 61  KRKVASIKSILADDREIRNLISPWMAKLNALMNANQTERRLTQAY 105