BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1434.p         (114 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775471.1| flagellar biosynthetic protein [Herbaspirill...   185   2e-45
ref|ZP_08276222.1| Flagellar biosynthesis protein FlhB [Oxalobac...   125   2e-27
ref|ZP_01916412.1| putative flagellar biosynthetic protein [Limn...   116   1e-24
ref|YP_001353134.1| hypothetical protein mma_1444 [Janthinobacte...   115   2e-24
ref|YP_003166187.1| putative flagellar biosynthetic protein [Can...   115   3e-24

>ref|YP_003775471.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63563.1| flagellar biosynthetic protein [Herbaspirillum seropedicae SmR1]
          Length = 114

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 101/114 (88%), Positives = 106/114 (92%)

Query: 1   MNKPKLPFQNAVALAYNTNQAAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLMQ 60
           M KP +P QNAVALAYN +QAAP+VVAKG GLVAEAIIARARESGV+VHESKELVSLLMQ
Sbjct: 1   MEKPNIPLQNAVALAYNASQAAPQVVAKGRGLVAEAIIARARESGVYVHESKELVSLLMQ 60

Query: 61  VELDQQIPPALYRTVAELLAWLYRIENMQLSGSVMYDTGSNYSNNSSGESDPTR 114
           VELDQQIPPALYRTVAELLAWLYRIENMQL+ SVMYDTG NYSNNS GESDPTR
Sbjct: 61  VELDQQIPPALYRTVAELLAWLYRIENMQLNSSVMYDTGLNYSNNSPGESDPTR 114


>ref|ZP_08276222.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF30311.1| Flagellar biosynthesis protein FlhB [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 97

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/86 (73%), Positives = 72/86 (83%)

Query: 1  MNKPKLPFQNAVALAYNTNQAAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLMQ 60
          M+KP  P +NAVALAY +  AAPK+VAKG GL+A  II RA+E GVFVHESKELV+LLMQ
Sbjct: 1  MDKPASPLKNAVALAYQSGDAAPKIVAKGRGLIATQIIERAKEHGVFVHESKELVALLMQ 60

Query: 61 VELDQQIPPALYRTVAELLAWLYRIE 86
          V+LD QIPPALYR +AELLAWLY IE
Sbjct: 61 VDLDGQIPPALYRAIAELLAWLYHIE 86


>ref|ZP_01916412.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105]
 gb|EDM82389.1| putative flagellar biosynthetic protein [Limnobacter sp. MED105]
          Length = 95

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/87 (70%), Positives = 72/87 (82%)

Query: 5  KLPFQNAVALAYNTNQAAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLMQVELD 64
          KL  Q AVALAY  +  APKVVAKG GL+AE II +A+ESGVFVHES+ELVSLLM V+LD
Sbjct: 4  KLSPQQAVALAYLEHSGAPKVVAKGQGLIAEQIIQKAKESGVFVHESRELVSLLMNVDLD 63

Query: 65 QQIPPALYRTVAELLAWLYRIENMQLS 91
          QQIPP LY+ +AELLAW+Y+IEN + S
Sbjct: 64 QQIPPGLYQAIAELLAWVYQIENKEFS 90


>ref|YP_001353134.1| hypothetical protein mma_1444 [Janthinobacterium sp. Marseille]
 gb|ABR91727.1| Uncharacterized conserved protein [Janthinobacterium sp.
          Marseille]
          Length = 95

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/86 (69%), Positives = 70/86 (81%)

Query: 7  PFQNAVALAYNTNQAAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLMQVELDQQ 66
          P Q AVALAY +N +AP+VVAKG G +AE II RA+E GV +HESKELV+LL+QVELD+ 
Sbjct: 6  PPQQAVALAYQSNDSAPRVVAKGRGAIAEQIIERAKEHGVAIHESKELVALLLQVELDEH 65

Query: 67 IPPALYRTVAELLAWLYRIENMQLSG 92
          IPPALYR VAELLAWLYR+E  Q  G
Sbjct: 66 IPPALYRAVAELLAWLYRVEAAQQGG 91


>ref|YP_003166187.1| putative flagellar biosynthetic protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
 gb|ACV34258.1| putative flagellar biosynthetic protein [Candidatus
          Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 108

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/86 (72%), Positives = 70/86 (81%)

Query: 4  PKLPFQNAVALAYNTNQAAPKVVAKGSGLVAEAIIARARESGVFVHESKELVSLLMQVEL 63
          P  P +NAVALAY+   AAP+VVAKG GLVAE IIARA E GV+VHES ELVSLL+QV+L
Sbjct: 5  PTNPLKNAVALAYSQTDAAPRVVAKGRGLVAEQIIARAHEHGVYVHESAELVSLLLQVDL 64

Query: 64 DQQIPPALYRTVAELLAWLYRIENMQ 89
          DQ IPP LY  VAELLAWLYR+E+ Q
Sbjct: 65 DQHIPPQLYLAVAELLAWLYRLESGQ 90