BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1433.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775470.1| ype IV pilus assembly protein PilZ [Herbaspi... 443 e-122 ref|YP_001353133.1| hypothetical protein mma_1443 [Janthinobacte... 243 2e-62 ref|YP_001100148.1| hypothetical protein HEAR1873 [Herminiimonas... 238 8e-61 ref|ZP_08276223.1| hypothetical protein IMCC9480_1726 [Oxalobact... 201 9e-50 ref|YP_004694178.1| YcgR family protein [Nitrosomonas sp. Is79A3... 157 2e-36 >ref|YP_003775470.1| ype IV pilus assembly protein PilZ [Herbaspirillum seropedicae SmR1] gb|ADJ63562.1| YcgR and PilZ families (type IV pilus assembly PilZ) protein [Herbaspirillum seropedicae SmR1] Length = 251 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 225/251 (89%), Positives = 242/251 (96%) Query: 1 MANNDEIDDDSPYRVHSRREIIALLTSMMEKNQLLSLLIKGGSESVITSILEVDADDDSL 60 MAN DEIDDDSPYRV SRREII+LLTSMMEKNQLLSL+IKGGSESVITSILEVDAD+D++ Sbjct: 1 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI 60 Query: 61 IIDAAPSAMLNESIVASKRIGFEALYNSIRITFNVDGARQVEYQNRPALKVGIPESLVRL 120 +DAAPSAMLNESIV+SK+I FEA+YNSIRITF V+GARQ+EYQ RPAL+V IPESLVRL Sbjct: 61 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL 120 Query: 121 QRREYFRIPTPIAKPLRCTFRITQADGSFVTVVTLLNNISAGGVGITDEKKLLPTTPGAM 180 QRRE+FRIPTPIAKPLRCTFRITQ+DGSFVTVVT+LNNISAGGVGITDEKKLL TTPG + Sbjct: 121 QRREFFRIPTPIAKPLRCTFRITQSDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI 180 Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKVVNRFGCQFIDIPRTVLAAIQRFITKLE 240 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGK+VNRFGCQFIDIPRTVLAAIQRFITKLE Sbjct: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE 240 Query: 241 REQNAKASGMM 251 REQNAKASGMM Sbjct: 241 REQNAKASGMM 251 >ref|YP_001353133.1| hypothetical protein mma_1443 [Janthinobacterium sp. Marseille] sp|A6SXY6|YCGR_JANMA RecName: Full=Flagellar brake protein YcgR; AltName: Full=Cyclic di-GMP binding protein YcgR gb|ABR90520.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 252 Score = 243 bits (619), Expect = 2e-62, Method: Composition-based stats. Identities = 116/250 (46%), Positives = 179/250 (71%), Gaps = 1/250 (0%) Query: 1 MANNDEIDDDSPYRVHSRREIIALLTSMMEKNQLLSLLIKGGSESVITSILEVDADDDSL 60 + ++ E DD +P+RV SRRE+IALL S+ E+NQL+ ++I G+++++TSIL +D +D++ Sbjct: 3 LVSDHENDDMNPFRVRSRREVIALLRSIGERNQLVRMVINHGADTIVTSILNIDETNDTV 62 Query: 61 IIDAAPSAMLNESIVASKRIGFEALYNSIRITFNVDGARQVEYQNRPALKVGIPESLVRL 120 ++D AP+A++N+ ++ S ++ FE + +IRI FN A Y+N PA + +P S+VRL Sbjct: 63 LLDCAPTAIMNQRVLDSNKLSFETVLENIRILFNSPSAESCMYENLPAFVIPLPTSVVRL 122 Query: 121 QRREYFRIPTPIAKPLRCTFRITQADGSFVTVVTLLNNISAGGVGITDEKKLLPTTPGAM 180 QRRE++R+PTP+ P+ CT T +G + V T L+NIS GGV + DEKKLL TT G Sbjct: 123 QRREFYRVPTPLTAPVSCTVPYT-TEGVTIEVATTLHNISGGGVSLVDEKKLLSTTIGLT 181 Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKVVNRFGCQFIDIPRTVLAAIQRFITKLE 240 Y++C++ L + L++V LQVR+ E +TNGK +NR GC+FI+ LA +Q++ITK+E Sbjct: 182 YQNCKIVLPGSGLITVALQVRNVLELTLTNGKSINRIGCEFINPSNGTLATVQKYITKIE 241 Query: 241 REQNAKASGM 250 REQNAKA+G+ Sbjct: 242 REQNAKATGL 251 >ref|YP_001100148.1| hypothetical protein HEAR1873 [Herminiimonas arsenicoxydans] emb|CAL62024.1| Conserved hypothetical protein [Herminiimonas arsenicoxydans] Length = 251 Score = 238 bits (606), Expect = 8e-61, Method: Composition-based stats. Identities = 114/250 (45%), Positives = 182/250 (72%), Gaps = 2/250 (0%) Query: 1 MANNDEIDDDSPYRVHSRREIIALLTSMMEKNQLLSLLIKGGSESVITSILEVDADDDSL 60 +A+ E DD +PYRV+SRRE+IALL S+ E+NQL+ +LI G+++++TSIL++D +++ Sbjct: 3 LASEYENDDLNPYRVNSRREVIALLRSIGERNQLVRMLINHGNDTIVTSILQIDETANTV 62 Query: 61 IIDAAPSAMLNESIVASKRIGFEALYNSIRITFNVDGARQVEYQNRPALKVGIPESLVRL 120 ++D AP+A++N+ ++ S+++ FE + +IRI FN A+ Y+N PA + +P S++RL Sbjct: 63 LLDCAPTAIMNQRVLNSEKLSFETVLENIRILFNSPAAQSCIYENLPAFIIPLPTSVIRL 122 Query: 121 QRREYFRIPTPIAKPLRCTFRITQADGSFVTVVTLLNNISAGGVGITDEKKLLPTTPGAM 180 QRRE++R+ TP+ P+ CT + D + VV L+NIS GG+ + DEKKL+ +TPG + Sbjct: 123 QRREFYRVSTPVTNPVYCTIPVKTED-QIIPVVVPLHNISGGGLSVVDEKKLIDSTPGRI 181 Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKVVNRFGCQFIDIPRTVLAAIQRFITKLE 240 YE+C+L+L +V++ LQVR+ E +TNGK ++R GC F+D LAA+Q++ITKLE Sbjct: 182 YENCRLDL-PGGVVTLALQVRNQLEVTLTNGKSIHRLGCAFVDPSNGALAAVQKYITKLE 240 Query: 241 REQNAKASGM 250 R+QNAKA+G+ Sbjct: 241 RDQNAKATGL 250 >ref|ZP_08276223.1| hypothetical protein IMCC9480_1726 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30312.1| hypothetical protein IMCC9480_1726 [Oxalobacteraceae bacterium IMCC9480] Length = 255 Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats. Identities = 102/243 (41%), Positives = 159/243 (65%), Gaps = 3/243 (1%) Query: 9 DDSPYRVHSRREIIALLTSMMEKNQLLSLLIKGGSESVITSILEVDADDDSLIIDAAPSA 68 D SP++V+SRREI AL+ ++ ++ QL+ LLI+ ++ +TS+L VD + +LI+D Sbjct: 14 DLSPFKVNSRREITALMRALCDQRQLIRLLIEDSGDAGVTSVLHVDEANGNLILDVPADT 73 Query: 69 MLNESIVASKRIGFEALYNSIRITFNVDGARQVEYQNRPALKVGIPESLVRLQRREYFRI 128 + ++ S+ I FE + IRI F + EY PAL + +P S++RLQRRE++R+ Sbjct: 74 SVTRRLLDSENISFETVLERIRILFFSTRVEECEYGGLPALSIALPASMIRLQRREFYRV 133 Query: 129 PTPIAKPLRCTFRITQADGSFVTVVTL-LNNISAGGVGITDEKKLLPTTPGAMYEDCQLE 187 TP++ PLRCT +I DG V VTL L N+S GG+ I D++ L T G +Y CQ+ Sbjct: 134 ATPLSTPLRCTIQIV--DGETVQPVTLSLLNVSGGGITIIDDQHQLDHTVGRIYHGCQIY 191 Query: 188 LGDNTLVSVKLQVRDCKEFKMTNGKVVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKA 247 L +T+V+ L++R+ + ++ NGK +R GC F D+P+ +LA IQR+IT+LEREQNA+ Sbjct: 192 LPGSTVVTTALEIRNSIDLRLENGKHTHRLGCLFHDLPKAMLAVIQRYITRLEREQNARN 251 Query: 248 SGM 250 +G+ Sbjct: 252 NGI 254 >ref|YP_004694178.1| YcgR family protein [Nitrosomonas sp. Is79A3] gb|AEJ00779.1| YcgR family protein [Nitrosomonas sp. Is79A3] Length = 258 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 145/244 (59%), Gaps = 3/244 (1%) Query: 3 NNDEIDDDSPYRVHSRREIIALLTSMMEKNQLLSLLIKGGSESVITSILEVDADDDSLII 62 + +EID++ +R+HS +I+ +L +M+ N L++L ++ ++TSI+ +DAD+ +I+ Sbjct: 18 SQEEIDEN--FRIHSEIDILFILRGIMQSNSLITLYPDYENDFILTSIVAIDADNKEMIV 75 Query: 63 DAAPSAMLNESIVASKRIGFEALYNSIRITFNVDGARQVEYQNRPALKVGIPESLVRLQR 122 D + + + SK + F N ++I F D ++++++ A V IP SL+R+QR Sbjct: 76 DYGTNERNCQKALQSKALIFVTTQNRVKIEFACDQIKKIQFKGENAFAVNIPRSLLRIQR 135 Query: 123 REYFRIPTPIAKPLRCTFRITQADGSFVTVVTLLNNISAGGVGITDEKKLLPTTPGAMYE 182 R +FRI TPI KPL+C IT + V LL +IS GG+ + D+ ++ PG +Y Sbjct: 136 RNHFRISTPIVKPLKCVIPITGKGTASKAEVALL-DISCGGIAVIDQHPIINFDPGIIYS 194 Query: 183 DCQLELGDNTLVSVKLQVRDCKEFKMTNGKVVNRFGCQFIDIPRTVLAAIQRFITKLERE 242 +CQ+ L + ++ +QV++ E + NG+ R GCQFID+ ++ A IQR+I K E+ Sbjct: 195 NCQIALPEIGTINATIQVKNTYEITLRNGQNCMRAGCQFIDLAASMEAMIQRYIIKQEQI 254 Query: 243 QNAK 246 + K Sbjct: 255 RKIK 258