BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1432.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775469.1| flagellar hook-basal body protein [Herbaspir...   133   1e-29
ref|YP_001100149.1| flagellar hook-basal body protein FliE [Herm...    95   4e-18
ref|ZP_08272777.1| Flagellar hook-basal body complex protein Fli...    94   7e-18
ref|YP_546087.1| flagellar hook-basal body protein FliE [Methylo...    94   7e-18
ref|YP_003048362.1| flagellar hook-basal body protein FliE [Meth...    94   9e-18

>ref|YP_003775469.1| flagellar hook-basal body protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63561.1| flagellar hook-basal body protein [Herbaspirillum seropedicae SmR1]
          Length = 118

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 102/118 (86%), Positives = 109/118 (92%)

Query: 1   MAIDSVIDTSKIEAMVAQLKAAAARAQGGVDPVQSGVAAEKPAQRVDFADVLKGAIDQVN 60
           MAI+SVIDTSKIEAMVAQLKAAAARAQG  +P Q G+  EK A RVDF++VLKGAIDQVN
Sbjct: 1   MAIESVIDTSKIEAMVAQLKAAAARAQGVSEPAQIGLKVEKAAPRVDFSEVLKGAIDQVN 60

Query: 61  DSQAKAAKMSQAFAMGDDSVNLSDVMIASQKASISFQTSIQVRNKLVSAYRDIMTMQV 118
           DSQ KA+KMSQAFAMGDD+VNLSDVMIASQKASISFQTSIQVRNKLVSAYRDIMTMQV
Sbjct: 61  DSQQKASKMSQAFAMGDDNVNLSDVMIASQKASISFQTSIQVRNKLVSAYRDIMTMQV 118


>ref|YP_001100149.1| flagellar hook-basal body protein FliE [Herminiimonas
           arsenicoxydans]
 emb|CAL62025.1| Flagellar hook-basal body complex protein FliE [Herminiimonas
           arsenicoxydans]
          Length = 119

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 66/113 (58%), Positives = 88/113 (77%), Gaps = 1/113 (0%)

Query: 7   IDTSKIEAMVAQLKAAAARAQGGVDPVQSGVA-AEKPAQRVDFADVLKGAIDQVNDSQAK 65
           ID++ I+AMVAQLKAAAAR+Q  ++P+  G +  EK A +VDF+  LK ++D V  +Q  
Sbjct: 7   IDSTAIDAMVAQLKAAAARSQPAINPLAGGASPVEKSATKVDFSQALKASLDNVASAQNH 66

Query: 66  AAKMSQAFAMGDDSVNLSDVMIASQKASISFQTSIQVRNKLVSAYRDIMTMQV 118
           A K+ Q F +GDDSVNLSDVMI+ QKASISFQ ++Q+RNK+VSAY++IM MQV
Sbjct: 67  ADKLGQKFTLGDDSVNLSDVMISMQKASISFQATVQMRNKVVSAYQEIMNMQV 119


>ref|ZP_08272777.1| Flagellar hook-basal body complex protein FliE [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF33776.1| Flagellar hook-basal body complex protein FliE [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 114

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 65/114 (57%), Positives = 83/114 (72%), Gaps = 3/114 (2%)

Query: 5   SVIDTSKIEAMVAQLKAAAARAQGGVDPVQSGVAAEKPAQRVDFADVLKGAIDQVNDSQA 64
           S+ID+ +IEAM++QLKAAA R QGGV  V +   A     +  FAD LK ++D VN SQ 
Sbjct: 4   SMIDSGRIEAMISQLKAAATRPQGGVPVVAADPTA---VAKTGFADALKASLDGVNASQK 60

Query: 65  KAAKMSQAFAMGDDSVNLSDVMIASQKASISFQTSIQVRNKLVSAYRDIMTMQV 118
            A  +   FA+GDD V+LSDVMI+SQKA+I FQ ++QVRNKLVSAY+DIM MQ+
Sbjct: 61  TAEGLGSRFALGDDKVSLSDVMISSQKANIGFQATVQVRNKLVSAYQDIMNMQI 114


>ref|YP_546087.1| flagellar hook-basal body protein FliE [Methylobacillus flagellatus
           KT]
 gb|ABE50246.1| flagellar hook-basal body complex protein (FliE) [Methylobacillus
           flagellatus KT]
          Length = 121

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 71/120 (59%), Positives = 88/120 (73%), Gaps = 8/120 (6%)

Query: 5   SVIDTSKIEAMVAQLKAAAARAQGGVDPVQSGVAAEKPAQ------RVDFADVLKGAIDQ 58
           S ID+ +IEAM+AQLKAAA +     D    G++   PAQ      RVDFADVLK +I Q
Sbjct: 4   SAIDSGRIEAMLAQLKAAAQKP--ATDTAMHGISGNSPAQKPQASNRVDFADVLKSSISQ 61

Query: 59  VNDSQAKAAKMSQAFAMGDDSVNLSDVMIASQKASISFQTSIQVRNKLVSAYRDIMTMQV 118
           VN +Q KA ++ Q+FAMGDD V+LSDVM+A QKA+IS Q +IQVRN+LVSAY+DIM MQV
Sbjct: 62  VNQAQVKAEELGQSFAMGDDKVSLSDVMVAGQKANISLQATIQVRNRLVSAYQDIMNMQV 121


>ref|YP_003048362.1| flagellar hook-basal body protein FliE [Methylotenera mobilis JLW8]
 gb|ACT47835.1| flagellar hook-basal body complex subunit FliE [Methylotenera
           mobilis JLW8]
          Length = 118

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 66/113 (58%), Positives = 86/113 (76%), Gaps = 1/113 (0%)

Query: 7   IDTSKIEAMVAQLKAAAARAQG-GVDPVQSGVAAEKPAQRVDFADVLKGAIDQVNDSQAK 65
           ID+S IE+M+AQ++AAA R Q   +  + S + A K   +VDFAD LK ++DQVN  Q  
Sbjct: 6   IDSSTIESMLAQMRAAAQRPQAESIANLASPIGANKSTGKVDFADALKASLDQVNQVQKS 65

Query: 66  AAKMSQAFAMGDDSVNLSDVMIASQKASISFQTSIQVRNKLVSAYRDIMTMQV 118
           A  + + FA+GDDSV+LSDVMIA QKA+ISFQ +IQVRNKLVSAY+DIM+MQ+
Sbjct: 66  AETLGKNFALGDDSVSLSDVMIAGQKANISFQATIQVRNKLVSAYQDIMSMQI 118