BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1431.p (594 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspiril... 939 0.0 ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacterace... 598 e-169 ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium... 595 e-168 ref|YP_001100151.1| flagellar MS-ring protein [Herminiimonas ars... 578 e-163 emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenico... 578 e-162 >ref|YP_003775467.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] gb|ADJ63559.1| hypothetical protein Hsero_2059 [Herbaspirillum seropedicae SmR1] Length = 569 Score = 939 bits (2426), Expect = 0.0, Method: Composition-based stats. Identities = 537/570 (94%), Positives = 555/570 (97%), Gaps = 1/570 (0%) Query: 25 MPQGQAAQGGVMGYARSPQGKRILLIIAAAATLALMAGIWLWSQKVEYRVLFANFNDRDG 84 MP Q AQ G+MGYARSPQGKRILLIIAAAATLA+MAGIWLWSQKVEYRVLF+NFNDRDG Sbjct: 1 MPGSQPAQNGMMGYARSPQGKRILLIIAAAATLAVMAGIWLWSQKVEYRVLFSNFNDRDG 60 Query: 85 GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLASQGLPKGGNVGFELMENQKLGI 144 GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLA+QGLPKGGNVGFELMENQKLGI Sbjct: 61 GAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLAAQGLPKGGNVGFELMENQKLGI 120 Query: 145 SQFLEQVNFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPG 204 SQFLEQVNFQRALEGELARS+ SL++VQ AR+HLALPKASVFVRDQQKPTASV+LSLYPG Sbjct: 121 SQFLEQVNFQRALEGELARSVGSLASVQTARVHLALPKASVFVRDQQKPTASVVLSLYPG 180 Query: 205 RGLDQQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQTNTLDPTQLKYVQDM 264 R LD QQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQ NTLDPTQLKYVQDM Sbjct: 181 RYLDPQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQPNTLDPTQLKYVQDM 240 Query: 265 QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTRDTAAVRSKQSSEA 324 QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQT+D+AAVRSKQSSEA Sbjct: 241 QQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTKDSAAVRSKQSSEA 300 Query: 325 NSATSGTSGIPGALTNQPPAPATAPIVNPAVANGAANQNGTAATPNGAAPTPAASGNSRK 384 NSA++GTSG+PGAL+NQPPAPATAPIVNPAVANGAANQ G AATPNGA PTP A+GNSRK Sbjct: 301 NSASNGTSGVPGALSNQPPAPATAPIVNPAVANGAANQTG-AATPNGALPTPTATGNSRK 359 Query: 385 DETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTLDNTGKIVMRPLTEAERNQITDLV 444 DETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRT+DNTGKIVMRPLTEAERNQITDLV Sbjct: 360 DETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTMDNTGKIVMRPLTEAERNQITDLV 419 Query: 445 KEAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIELAKEIGKYVLVAAVLLFLYFR 504 KEAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMI+LAKEIGKYVLVAAVLLFLYFR Sbjct: 420 KEAMGYNKDRGDSLNVVNTQFSTDMEPEVPLWKQPGMIDLAKEIGKYVLVAAVLLFLYFR 479 Query: 505 VLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGEPAVDERAQ 564 VLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGE VDERAQ Sbjct: 480 VLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGESEVDERAQ 539 Query: 565 YKANLETAKQWAKNDPKLVASIIKSWVNNE 594 YKANLETAKQWAKNDPKLVASIIKSWVNNE Sbjct: 540 YKANLETAKQWAKNDPKLVASIIKSWVNNE 569 >ref|ZP_08272776.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] gb|EGF33775.1| Flagellar M-ring protein fliF [Oxalobacteraceae bacterium IMCC9480] Length = 564 Score = 598 bits (1543), Expect = e-169, Method: Composition-based stats. Identities = 342/570 (60%), Positives = 432/570 (75%), Gaps = 20/570 (3%) Query: 28 GQAAQGGVMGYARSPQGKRILLIIAAAATLALMAGIWLWSQKVEYRVLFANFNDRDGGAI 87 G A ++ +A S G+ +LL++ AA +A+MAG+W+WSQ+ +YRVLF+NF DRDGGAI Sbjct: 7 GSAVPNPLISFAESQGGRNLLLMLGAAIVIAVMAGVWMWSQQPDYRVLFSNFTDRDGGAI 66 Query: 88 VASLQQMNVPYKYSDGGTAILVPENMVHDARLKLASQGLPKGGNVGFELMENQKLGISQF 147 V LQQMNVPYK+++GG AILVP + VHDARL++A+ GLPKGGNVGFELMENQKLG+SQF Sbjct: 67 VTQLQQMNVPYKFAEGGGAILVPADQVHDARLRIAAMGLPKGGNVGFELMENQKLGVSQF 126 Query: 148 LEQVNFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGL 207 LEQVNFQRALEGELARS+QS+ AV++AR+HLA+PKASVFVRDQQKPTASV+L+L PGR L Sbjct: 127 LEQVNFQRALEGELARSVQSIGAVESARVHLAMPKASVFVRDQQKPTASVVLNLNPGRSL 186 Query: 208 DQQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQTNTLDPTQLKYVQDMQQD 267 +QQVSAIVHLVASSVP+L P ++++DQNGNLLSDT+K A+ LDPTQLKY+Q++QQ+ Sbjct: 187 SEQQVSAIVHLVASSVPDLPPGNISVIDQNGNLLSDTSKAAKATGLDPTQLKYIQEVQQN 246 Query: 268 IVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTRDTAAVRSKQSSEANSA 327 IV+R+ESII PIVG NVRAEATAD+DFS SEQA+E YKPN + + +RS+QSSE+ + Sbjct: 247 IVRRIESIITPIVGPNNVRAEATADIDFSTSEQAAETYKPNSPPNQSTMRSQQSSESQGS 306 Query: 328 TSGTSGIPGALTNQPPAPATAPIVNPAVANGAANQNGTAATPNGAAPTPAASGNSRKDET 387 G G+PGAL+NQP A ATAPI PA A A G + A P S+KD T Sbjct: 307 NPGAGGVPGALSNQPAANATAPINPPAPAPAPAAGQGVSTGATATAAVP-----SQKDMT 361 Query: 388 INYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTLDNTGKIVMRPLTEAERNQITDLVKEA 447 +NYEVDKTVRY QQPMGGV+R++VAVVVNYK+ D GK+ PLTEAER QITDLVKEA Sbjct: 362 VNYEVDKTVRYVQQPMGGVKRISVAVVVNYKQVTDKAGKVTATPLTEAERVQITDLVKEA 421 Query: 448 MGYNKDRGDSLNVVNTQFS---TDMEPEVPLWKQPGMIELAKEIGKYVLVAAVLLFLYFR 504 MG+NKDRGD+LNVVN+ F+ ++ PEVP+WK+P MI+LAKE+GKY+L LL+L+F Sbjct: 422 MGFNKDRGDTLNVVNSAFAGVPKEVFPEVPIWKRPEMIQLAKELGKYLLGGIALLYLFFG 481 Query: 505 VLRPIVWKLSGREERER--LAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGEPAVDER 562 VLRP++ K + + + R + E EAE A AA + PA Sbjct: 482 VLRPMLKKFNTPQPKIRAVVDDEDDEAETPEMRAMHAAE----------RTTEVPAESAS 531 Query: 563 AQYKANLETAKQWAKNDPKLVASIIKSWVN 592 Y+ NL+ AKQ AK+DPK+VA+I+K+WV+ Sbjct: 532 MAYQQNLDLAKQLAKDDPKVVANIVKNWVS 561 >ref|YP_001353131.1| flagellar MS-ring protein [Janthinobacterium sp. Marseille] gb|ABR88807.1| flagellar basal-body M-ring protein [Janthinobacterium sp. Marseille] Length = 585 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 349/595 (58%), Positives = 434/595 (72%), Gaps = 33/595 (5%) Query: 17 GELGNIEGMPQGQAA----QGGVMGYARSPQGKRILLIIAAAATLALMAGIWLWSQKVEY 72 GE G G+P +A Q M A+SP G++++L++ +AA +A+M + LWSQK EY Sbjct: 7 GEGGLPPGVPAEASATTNMQNSFMDMAKSPNGRKVMLMLGSAAVIAIMIALVLWSQKPEY 66 Query: 73 RVLFANFNDRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLASQGLPKGGNV 132 +VLF+NF+DRDGGAI++SLQ NVPYK+++GG AILVP + VH+ RLKLA++GLPKGG V Sbjct: 67 KVLFSNFSDRDGGAIMSSLQASNVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGGV 126 Query: 133 GFELMENQKLGISQFLEQVNFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQK 192 GFELMENQKLG+SQFLEQVNFQRALEGELARSIQS+ AVQAAR+HLA+PKASVFVRDQQK Sbjct: 127 GFELMENQKLGVSQFLEQVNFQRALEGELARSIQSVGAVQAARVHLAMPKASVFVRDQQK 186 Query: 193 PTASVILSLYPGRGLDQQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQTNT 252 PTASV+L+L GR LDQQQVSAIVHLVASSVPELSPK VTIVDQ+GNLLS+T K A +NT Sbjct: 187 PTASVLLNLRQGRALDQQQVSAIVHLVASSVPELSPKNVTIVDQSGNLLSETNKPAGSNT 246 Query: 253 LDPTQLKYVQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTRD 312 LDP+QLKYVQ++QQ I KR+ESII PIVG N+RAEATADVDFS SEQA+E YKPNQ + Sbjct: 247 LDPSQLKYVQELQQSITKRIESIITPIVGASNIRAEATADVDFSTSEQAAEIYKPNQVPN 306 Query: 313 TAAVRSKQSSEANSATSGTSGIPGALTNQPPAPATAPIVNPAVANGAANQNGT------- 365 +A VRS Q+SE+ +G SG+PGALTNQP ATAP+ P +A T Sbjct: 307 SATVRSLQTSESRGNGTGASGVPGALTNQPAPNATAPLTAPPLAADGTPSTATNPPAPGT 366 Query: 366 ---AATPNGAAPTPAASGNSRKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTLD 422 AA AA A + ++KD T N+EVDKTVRY QQPMGG++RL+VAVVVNYKR + Sbjct: 367 PAAAAAAAAAATAAANATPTQKDTTTNFEVDKTVRYVQQPMGGLKRLSVAVVVNYKRVVA 426 Query: 423 NTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGDSLNVVNTQFSTDMEPEV---PLWKQP 479 GK+ + PL+E E+NQITDLVKEAMGYNKDRGD+LNVVN+ F+ + E+ PLW++P Sbjct: 427 KDGKVTIAPLSETEKNQITDLVKEAMGYNKDRGDTLNVVNSPFAGVEKDEIVQPPLWERP 486 Query: 480 GMIELAKEIGKYVLVAAVLLFLYFRVLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVA 539 +IE+A + KY+ + VL LY ++L+P++ KL+ E LA E AEA Sbjct: 487 EIIEMAIQAAKYLAIGIVLFLLYRKLLKPMLNKLN-PPPPEPLALEDESAEALEKMHLEE 545 Query: 540 AGFDPDDPDAIVNLSGEPAVDERAQYKANLETAKQWAKNDPKLVASIIKSWVNNE 594 G P I N Y+ NLE AK+ A+ DPK+VA+I+KSWV N+ Sbjct: 546 DG----KPMGIQN-----------TYQQNLEAAKELARKDPKVVANIVKSWVGND 585 >ref|YP_001100151.1| flagellar MS-ring protein [Herminiimonas arsenicoxydans] Length = 545 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 333/561 (59%), Positives = 411/561 (73%), Gaps = 22/561 (3%) Query: 39 ARSPQGKRILLIIAAAATLALMAGIWLWSQKVEYRVLFANFNDRDGGAIVASLQQMNVPY 98 A+SP G++ LL++ AA +A+M G+ LW QK EYRVLF+NF+DRDGGAI+ SLQ NVPY Sbjct: 2 AKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFSDRDGGAIMTSLQAANVPY 61 Query: 99 KYSDGGTAILVPENMVHDARLKLASQGLPKGGNVGFELMENQKLGISQFLEQVNFQRALE 158 K+++GG AILVP + VH+ RLKLA++GLPKGG+VGFELMENQKLG+SQFLEQVNFQRALE Sbjct: 62 KFAEGGGAILVPADKVHEIRLKLAAEGLPKGGSVGFELMENQKLGVSQFLEQVNFQRALE 121 Query: 159 GELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILSLYPGRGLDQQQVSAIVHL 218 GELARSIQS+ AVQAAR+HLALPKASVFVRDQQKPTASV+L+L+ GR LDQQQVSAIVHL Sbjct: 122 GELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLNLHAGRFLDQQQVSAIVHL 181 Query: 219 VASSVPELSPKAVTIVDQNGNLLSDTTKQAQTNTLDPTQLKYVQDMQQDIVKRVESIIAP 278 VASSVPELSPK VTIVDQ GNLLS+ K A TNTLDP+QLKYVQ++QQ+I KR+ESII P Sbjct: 182 VASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKYVQELQQNIAKRIESIITP 241 Query: 279 IVGNGNVRAEATADVDFSRSEQASEAYKPNQTRDTAAVRSKQSSEANSATSGTSGIPGAL 338 IVG NVRAEATADVDFS SEQA+E YKPNQ +A VRS+Q+SE+ + ++ +G+PGAL Sbjct: 242 IVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQTSESTNGSNNATGVPGAL 301 Query: 339 TNQPPAPATAPI-VNPAVANGAANQNGTAATPNGAAPTPAASGNS-RKDETINYEVDKTV 396 TNQP ATAP+ P AA A ++D T NYEVDKT+ Sbjct: 302 TNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQATPIQRDTTTNYEVDKTI 361 Query: 397 RYTQQPMGGVRRLTVAVVVNYKRTLDNTGKIVMRPLTEAERNQITDLVKEAMGYNKDRGD 456 RY QQPMGG++RL+VAVVVNYKR + GK+ PLTE E+ QITDLV+EAMGYNKDRGD Sbjct: 362 RYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKTQITDLVREAMGYNKDRGD 421 Query: 457 SLNVVNTQFS---TDMEPEVPLWKQPGMIELAKEIGKYVLVAAVLLFLYFRVLRPIVWKL 513 +LNVVN+ F+ + P++PLW++P I++ + KY+L+ VLL LYF+VL+P++ KL Sbjct: 422 TLNVVNSPFAGSNKEEAPKLPLWERPEAIDMGMQGAKYLLLGIVLLILYFKVLKPLLNKL 481 Query: 514 SGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSGEPAVDERAQYKANLETAK 573 + L E + A G P Y+ NLE AK Sbjct: 482 N--PPPLALTDESGQPVGMAQELEEEVG---------------PMGIHMHSYQQNLEAAK 524 Query: 574 QWAKNDPKLVASIIKSWVNNE 594 + A+ DPK+VA+I+K+WV NE Sbjct: 525 ELARQDPKVVANIVKAWVGNE 545 >emb|CAL62027.2| Flagellar M-ring protein [Herminiimonas arsenicoxydans] Length = 562 Score = 578 bits (1489), Expect = e-162, Method: Composition-based stats. Identities = 337/579 (58%), Positives = 417/579 (72%), Gaps = 26/579 (4%) Query: 25 MPQGQAAQ----GGVMGYARSPQGKRILLIIAAAATLALMAGIWLWSQKVEYRVLFANFN 80 MPQ A ++ A+SP G++ LL++ AA +A+M G+ LW QK EYRVLF+NF+ Sbjct: 1 MPQTAGANPNSPSTILNMAKSPNGRKFLLMVGVAAVIAVMIGLVLWGQKPEYRVLFSNFS 60 Query: 81 DRDGGAIVASLQQMNVPYKYSDGGTAILVPENMVHDARLKLASQGLPKGGNVGFELMENQ 140 DRDGGAI+ SLQ NVPYK+++GG AILVP + VH+ RLKLA++GLPKGG+VGFELMENQ Sbjct: 61 DRDGGAIMTSLQAANVPYKFAEGGGAILVPADKVHEIRLKLAAEGLPKGGSVGFELMENQ 120 Query: 141 KLGISQFLEQVNFQRALEGELARSIQSLSAVQAARIHLALPKASVFVRDQQKPTASVILS 200 KLG+SQFLEQVNFQRALEGELARSIQS+ AVQAAR+HLALPKASVFVRDQQKPTASV+L+ Sbjct: 121 KLGVSQFLEQVNFQRALEGELARSIQSVGAVQAARVHLALPKASVFVRDQQKPTASVLLN 180 Query: 201 LYPGRGLDQQQVSAIVHLVASSVPELSPKAVTIVDQNGNLLSDTTKQAQTNTLDPTQLKY 260 L+ GR LDQQQVSAIVHLVASSVPELSPK VTIVDQ GNLLS+ K A TNTLDP+QLKY Sbjct: 181 LHAGRFLDQQQVSAIVHLVASSVPELSPKNVTIVDQAGNLLSENNKPAGTNTLDPSQLKY 240 Query: 261 VQDMQQDIVKRVESIIAPIVGNGNVRAEATADVDFSRSEQASEAYKPNQTRDTAAVRSKQ 320 VQ++QQ+I KR+ESII PIVG NVRAEATADVDFS SEQA+E YKPNQ +A VRS+Q Sbjct: 241 VQELQQNIAKRIESIITPIVGLNNVRAEATADVDFSTSEQAAEIYKPNQVPSSATVRSQQ 300 Query: 321 SSEANSATSGTSGIPGALTNQPPAPATAPI-VNPAVANGAANQNGTAATPNGAAPTPAAS 379 +SE+ + ++ +G+PGALTNQP ATAP+ P AA A Sbjct: 301 TSESTNGSNNATGVPGALTNQPAPAATAPLNTTPQTTAAPGTPGAPGTPGAPAATATAPQ 360 Query: 380 GNS-RKDETINYEVDKTVRYTQQPMGGVRRLTVAVVVNYKRTLDNTGKIVMRPLTEAERN 438 ++D T NYEVDKT+RY QQPMGG++RL+VAVVVNYKR + GK+ PLTE E+ Sbjct: 361 ATPIQRDTTTNYEVDKTIRYVQQPMGGLKRLSVAVVVNYKRVVGKDGKVSFLPLTEIEKT 420 Query: 439 QITDLVKEAMGYNKDRGDSLNVVNTQFS---TDMEPEVPLWKQPGMIELAKEIGKYVLVA 495 QITDLV+EAMGYNKDRGD+LNVVN+ F+ + P++PLW++P I++ + KY+L+ Sbjct: 421 QITDLVREAMGYNKDRGDTLNVVNSPFAGSNKEEAPKLPLWERPEAIDMGMQGAKYLLLG 480 Query: 496 AVLLFLYFRVLRPIVWKLSGREERERLAKEKAEAEAAAAAAAVAAGFDPDDPDAIVNLSG 555 VLL LYF+VL+P++ KL+ L E + A G Sbjct: 481 IVLLILYFKVLKPLLNKLN--PPPLALTDESGQPVGMAQELEEEVG-------------- 524 Query: 556 EPAVDERAQYKANLETAKQWAKNDPKLVASIIKSWVNNE 594 P Y+ NLE AK+ A+ DPK+VA+I+K+WV NE Sbjct: 525 -PMGIHMHSYQQNLEAAKELARQDPKVVANIVKAWVGNE 562