BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1429.p (235 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775465.1| flagellar assembly protein FliH [Herbaspiril... 319 2e-85 ref|YP_001353129.1| FliH flagellar biosynthesis/type III secreto... 195 4e-48 ref|YP_001100153.1| putative FliH [Herminiimonas arsenicoxydans]... 193 2e-47 ref|ZP_08272774.1| Flagellar assembly protein FliH [Oxalobactera... 174 7e-42 ref|YP_003673965.1| Flagellar assembly protein FliH/Type III sec... 154 1e-35 >ref|YP_003775465.1| flagellar assembly protein FliH [Herbaspirillum seropedicae SmR1] gb|ADJ63557.1| flagellar assembly FliH protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 211/235 (89%), Positives = 220/235 (93%), Gaps = 2/235 (0%) Query: 1 MRAKIIPKEEMTPYQRWELASFNEEPEPEPQPEMLPEEEEFLEEPPPVPQLTAEQLDAIR 60 MRAKIIPKEEMTPYQRWELASF++EPEPEP+P EE EEPPPVPQLTAEQLDAIR Sbjct: 1 MRAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFL--EEPPPVPQLTAEQLDAIR 58 Query: 61 EAARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKM 120 EAARQEGFAEGREHGLQAGRSEGY+AGLQQGQQE+NE+IQHFRQIAVNFSTEVSQCSEKM Sbjct: 59 EAARQEGFAEGREHGLQAGRSEGYMAGLQQGQQEINEVIQHFRQIAVNFSTEVSQCSEKM 118 Query: 121 APELLDLALDLAKSMLKTALNVRPELILPTVSAAIHALPVLQLPASLTLHPEDAALVRKH 180 APELLDLALDLAKSMLKTAL RPEL+LPTVSAAI ALPVLQLPASL LHPEDAALVRKH Sbjct: 119 APELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKH 178 Query: 181 LGEELAQQGWKIEEDAHLDRGGCRVETRTNQIDATTPTRWQRLGESLSKQLDWLE 235 LGEEL QQGWKIEEDA LDRGGC+VETRTNQIDATT TRW+RLGESLSKQLDWLE Sbjct: 179 LGEELTQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWLE 233 >ref|YP_001353129.1| FliH flagellar biosynthesis/type III secretory pathway protein [Janthinobacterium sp. Marseille] gb|ABR89110.1| FliH flagellar biosynthesis/type III secretory pathway protein [Janthinobacterium sp. Marseille] Length = 232 Score = 195 bits (496), Expect = 4e-48, Method: Composition-based stats. Identities = 119/235 (50%), Positives = 150/235 (63%), Gaps = 8/235 (3%) Query: 3 AKIIPKEEMTPYQRWELASFNEEP---EPEPQPEMLPEEEEFLEEPPPVPQLTAEQLDAI 59 + +IPKE + YQRWE+ SFNEE + EP + E A + I Sbjct: 2 SNVIPKERQSAYQRWEMTSFNEEKPIVKVEPVKDAAAELAAANAAAAAHTANIAAMAEQI 61 Query: 60 REAARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEK 119 E AR E AEG G++ GR+ G G Q +QE ++Q IA F TEV+Q +E Sbjct: 62 -ENARAEAHAEGYAAGMEEGRAAGLAEGRVQAEQEKQTLLQ----IADTFGTEVAQANEL 116 Query: 120 MAPELLDLALDLAKSMLKTALNVRPELILPTVSAAIHALPVLQLPASLTLHPEDAALVRK 179 +A ++LDLALDLAK+MLKTALNVRPELI+P V AIH LP LQ PA L LHP+DAA++ Sbjct: 117 IASDMLDLALDLAKAMLKTALNVRPELIVPLVREAIHYLPTLQQPALLHLHPDDAAIIAS 176 Query: 180 HLGEELAQQGWKIEEDAHLDRGGCRVETRTNQIDATTPTRWQRLGESLSKQLDWL 234 HLG+EL+ W++ ED H+DRG CRVET TNQIDATT TRWQR+ +L K+ DWL Sbjct: 177 HLGDELSTAAWRVVEDPHMDRGSCRVETVTNQIDATTSTRWQRIAAALGKESDWL 231 >ref|YP_001100153.1| putative FliH [Herminiimonas arsenicoxydans] gb|AAV68358.1| FliH [Herminiimonas arsenicoxydans] emb|CAL62029.1| putative flagellar assembly protein FliH [Herminiimonas arsenicoxydans] Length = 233 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 114/236 (48%), Positives = 146/236 (61%), Gaps = 7/236 (2%) Query: 1 MRAKIIPKEEMTPYQRWELASFNEEPE--PEPQPEMLPEEEEFLEEPPPVPQLTAEQLDA 58 + + +IPKE+ + YQRWE+ SF EEP P+ A Sbjct: 2 LMSDVIPKEKQSAYQRWEMTSFGEEPAGGKASTPDTAASIAAANAAASAQMANIAAMAQQ 61 Query: 59 IREAARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSE 118 I E AR + AEG GL+ GR+ G G Q +QE + RQIA F TEV+Q +E Sbjct: 62 I-EDARAQAHAEGYAAGLEEGRAAGLAEGRAQAEQERLSL----RQIAETFGTEVAQANE 116 Query: 119 KMAPELLDLALDLAKSMLKTALNVRPELILPTVSAAIHALPVLQLPASLTLHPEDAALVR 178 +A ++LDL+LDLAK+MLKTALNVRPELI+P V AIH LP LQ P L LHP+DAA+V Sbjct: 117 LIANDMLDLSLDLAKAMLKTALNVRPELIIPLVREAIHYLPTLQQPTLLHLHPDDAAIVA 176 Query: 179 KHLGEELAQQGWKIEEDAHLDRGGCRVETRTNQIDATTPTRWQRLGESLSKQLDWL 234 H+ +EL+ GW++ ED H+ RGGCRVE +NQIDA+ PTRWQR+ SL K+ DWL Sbjct: 177 VHMNDELSAVGWRVVEDTHMGRGGCRVEAVSNQIDASAPTRWQRIAASLGKESDWL 232 >ref|ZP_08272774.1| Flagellar assembly protein FliH [Oxalobacteraceae bacterium IMCC9480] gb|EGF33773.1| Flagellar assembly protein FliH [Oxalobacteraceae bacterium IMCC9480] Length = 219 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 105/235 (44%), Positives = 152/235 (64%), Gaps = 17/235 (7%) Query: 1 MRAKIIPKEEMTPYQRWELASFNEEPEPEPQPEMLPEEEEFLEEPPPVPQLTAEQLDAIR 60 M IIPKE + YQRWE+ SF + P + PP+P++T E+ AIR Sbjct: 1 MSDAIIPKERQSAYQRWEMDSFGDNR---------PSAQPQAPAAPPIPRVTIEEQAAIR 51 Query: 61 EAARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKM 120 EAA+ +G+A G L GR+EG L+ G++E + I H RQIAV +E + E + Sbjct: 52 EAAQIKGYATG----LTDGRTEG----LRLGREEAHAEIDHLRQIAVALGSEAAIADELI 103 Query: 121 APELLDLALDLAKSMLKTALNVRPELILPTVSAAIHALPVLQLPASLTLHPEDAALVRKH 180 + +++ LALDLA++MLKTAL ++PEL+LP V+ AI LP +Q PA L LHP+DA LVR+ Sbjct: 104 SVDVMRLALDLAQAMLKTALEIKPELVLPIVAEAIRYLPNVQQPALLYLHPDDARLVREE 163 Query: 181 LGEELAQQGWKIEEDAHLDRGGCRVETRTNQIDATTPTRWQRLGESLSKQLDWLE 235 + +EL + GW+I +D+ + RGGCR++T +NQIDA+ TRWQRL ++L + WL+ Sbjct: 164 MHDELDKAGWRIADDSQMQRGGCRIDTASNQIDASIETRWQRLTDALGQTPGWLK 218 >ref|YP_003673965.1| Flagellar assembly protein FliH/Type III secretion system HrpE [Methylotenera versatilis 301] gb|ADI29388.1| Flagellar assembly protein FliH/Type III secretion system HrpE [Methylotenera versatilis 301] Length = 215 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 141/229 (61%), Gaps = 18/229 (7%) Query: 6 IPKEEMTPYQRWELASFNEEPEPEPQPEMLPEEEEFLEEPPPVPQLTAEQLDAIREAARQ 65 IPKE+ T Y+RWE++SF E P ++E+ + +E++ I E AR+ Sbjct: 3 IPKEQQTAYERWEMSSFGEG-SPSVSTSRPKKKED---------TVASEKIAQIFEVARK 52 Query: 66 EGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKMAPELL 125 E + +G + EG+ G+ + ++ E +F + +FS + + E++A + L Sbjct: 53 EAYTKGMQ--------EGFAVGMAKAREYAQEEKNNFLTLMNSFSDALEKSDEQIADDAL 104 Query: 126 DLALDLAKSMLKTALNVRPELILPTVSAAIHALPVLQLPASLTLHPEDAALVRKHLGEEL 185 LAL++AK+MLK LN+ P ++LP V AIH LP +Q PA + +H +DA ++R++L EE+ Sbjct: 105 SLALEIAKAMLKVKLNIDPAVVLPVVMDAIHYLPYVQKPARILVHHDDAQMLREYLAEEI 164 Query: 186 AQQGWKIEEDAHLDRGGCRVETRTNQIDATTPTRWQRLGESLSKQLDWL 234 A Q W+I+ED +++RGGC VET NQIDA+ RW+R+ ++LS++ DWL Sbjct: 165 ASQHWQIQEDINIERGGCIVETGANQIDASNEVRWKRISDALSQKSDWL 213