BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1428.p         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775464.1| flagellum-specific ATP synthase [Herbaspiril...   219   1e-55
ref|YP_315361.1| flagellar biosynthesis/type III secretory pathw...   153   8e-36
gb|AAV68359.1| FliI [Herminiimonas arsenicoxydans] >gi|193222344...   151   3e-35
ref|ZP_08272773.1| Flagellum-specific ATP synthase FliI [Oxaloba...   145   1e-33
ref|YP_001353128.1| FliI flagellum specific ATP synthase [Janthi...   134   6e-30

>ref|YP_003775464.1| flagellum-specific ATP synthase [Herbaspirillum seropedicae SmR1]
 gb|ADJ63556.1| flagellum-specific ATP synthase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 468

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 121/124 (97%), Positives = 122/124 (98%)

Query: 1   MNSPMPSHSSLWQAYLHNCRSLVAMAEPTRTAGRITRVAGLVMEAVGLKLPVGSPCNVPL 60
           MNSPMPSHSSLWQAYLHNCRSLVAMAEPT TAGRITRVAGLVMEAVGLKLPVGSPCNVPL
Sbjct: 1   MNSPMPSHSSLWQAYLHNCRSLVAMAEPTMTAGRITRVAGLVMEAVGLKLPVGSPCNVPL 60

Query: 61  PNGTMIEAEVVGFQDERLFLMPQSDVEGIVPGTRVYPVEPVRPPPRTGPISFTPRRVDEH 120
           PNGTMIEAEVVGFQD+RLFLMPQSDVEGIVPGTRVYPVEPVRPPPRTGPISFTPRR DEH
Sbjct: 61  PNGTMIEAEVVGFQDDRLFLMPQSDVEGIVPGTRVYPVEPVRPPPRTGPISFTPRRADEH 120

Query: 121 SRRL 124
           SRRL
Sbjct: 121 SRRL 124


>ref|YP_315361.1| flagellar biosynthesis/type III secretory pathway ATPase FliI
           [Thiobacillus denitrificans ATCC 25259]
 gb|AAZ97556.1| flagellar biosynthesis/type III secretory pathway ATPase FliI
           [Thiobacillus denitrificans ATCC 25259]
          Length = 468

 Score =  153 bits (387), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 77/117 (65%), Positives = 92/117 (78%)

Query: 8   HSSLWQAYLHNCRSLVAMAEPTRTAGRITRVAGLVMEAVGLKLPVGSPCNVPLPNGTMIE 67
           H++ WQAYL +C  L+A+AEP R +GRITRVAGLVMEAVGLKLPVGS C VPLPNG+ +E
Sbjct: 6   HAARWQAYLQDCTELLAIAEPMRLSGRITRVAGLVMEAVGLKLPVGSACTVPLPNGSHLE 65

Query: 68  AEVVGFQDERLFLMPQSDVEGIVPGTRVYPVEPVRPPPRTGPISFTPRRVDEHSRRL 124
           AEVVGF+ ERLFLMPQSDVEGIVPG RV+PVE +   P  G ++   RR  + +R L
Sbjct: 66  AEVVGFEGERLFLMPQSDVEGIVPGARVFPVEVIPTLPGLGQVNHPRRRPSDRTRHL 122


>gb|AAV68359.1| FliI [Herminiimonas arsenicoxydans]
 emb|CAL62030.2| flagellum-specific ATP synthase [Herminiimonas arsenicoxydans]
          Length = 471

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/113 (67%), Positives = 90/113 (79%)

Query: 12  WQAYLHNCRSLVAMAEPTRTAGRITRVAGLVMEAVGLKLPVGSPCNVPLPNGTMIEAEVV 71
           WQAYL +CR+L+ +AEP   +GRITRVAGLVMEAVGLKL VGS C +PL NG  IEAEVV
Sbjct: 15  WQAYLRDCRTLLDIAEPMLVSGRITRVAGLVMEAVGLKLAVGSACTIPLANGARIEAEVV 74

Query: 72  GFQDERLFLMPQSDVEGIVPGTRVYPVEPVRPPPRTGPISFTPRRVDEHSRRL 124
           GF+D+RLFLMPQSDVEGIVPGTRV+PVE V+  P+ G +S   RR  + +R L
Sbjct: 75  GFEDDRLFLMPQSDVEGIVPGTRVFPVEVVQSLPKPGAVSHPRRRPSDRTRHL 127


>ref|ZP_08272773.1| Flagellum-specific ATP synthase FliI [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33772.1| Flagellum-specific ATP synthase FliI [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 466

 Score =  145 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/113 (61%), Positives = 87/113 (76%)

Query: 12  WQAYLHNCRSLVAMAEPTRTAGRITRVAGLVMEAVGLKLPVGSPCNVPLPNGTMIEAEVV 71
           WQAYL +C  L+ + EP + +GR+TRVAGLVMEA+GL+L VGS C VPLPNG+ IEAEVV
Sbjct: 9   WQAYLRDCSELLQIVEPMQVSGRVTRVAGLVMEAIGLRLAVGSACTVPLPNGSRIEAEVV 68

Query: 72  GFQDERLFLMPQSDVEGIVPGTRVYPVEPVRPPPRTGPISFTPRRVDEHSRRL 124
           GF ++RLFLMPQSDVEG++PGTRV+PVE V   PR G ++   RR  +  R L
Sbjct: 69  GFDNDRLFLMPQSDVEGVIPGTRVFPVEAVHSLPRAGSVNHPRRRPSDRGRHL 121


>ref|YP_001353128.1| FliI flagellum specific ATP synthase [Janthinobacterium sp.
           Marseille]
 gb|ABR88986.1| FliI flagellum specific ATP synthase [Janthinobacterium sp.
           Marseille]
          Length = 448

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 70/103 (67%), Positives = 80/103 (77%)

Query: 22  LVAMAEPTRTAGRITRVAGLVMEAVGLKLPVGSPCNVPLPNGTMIEAEVVGFQDERLFLM 81
           L+ +AEP   +GRITRVAGLVMEAVGLKL VGS C VPL NG  IEAEVVGF+++RLFLM
Sbjct: 2   LLDIAEPMLVSGRITRVAGLVMEAVGLKLAVGSACTVPLANGARIEAEVVGFENDRLFLM 61

Query: 82  PQSDVEGIVPGTRVYPVEPVRPPPRTGPISFTPRRVDEHSRRL 124
           PQSDVEGIVPGTRVYPVE V+  PR G ++   RR  +  R L
Sbjct: 62  PQSDVEGIVPGTRVYPVEVVQSLPRPGAVTHPRRRPSDRGRHL 104