BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1427.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773485.1| LysR family transcription regulator protein ... 456 e-126 ref|YP_001583870.1| LysR family transcriptional regulator [Burkh... 226 3e-57 ref|ZP_03582672.1| HTH-type transcriptional regulator AlsR (Als ... 226 4e-57 ref|YP_001778916.1| LysR family transcriptional regulator [Burkh... 226 4e-57 ref|ZP_04943402.1| Transcriptional regulator [Burkholderia cenoc... 224 1e-56 >ref|YP_003773485.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61577.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 275/296 (92%), Positives = 285/296 (96%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIK LE E+GGALFLR+S GVELSEV Sbjct: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKALEEEVGGALFLRSSQGVELSEV 60 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 GRV LPHAQ+AVD AEQALRAA+QAASGE GLLRMGFTSSAVFHPLVSHALQQFRERHRK Sbjct: 61 GRVLLPHAQRAVDQAEQALRAARQAASGETGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 Query: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAELGVVELPAEKLKVALPRSHPLARR 180 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSA LGVVELPAEKLKVALPRSHPLARR Sbjct: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAALGVVELPAEKLKVALPRSHPLARR 180 Query: 181 KSLHLQDLAGENFIMVPRGKGSALYDNIFSACQAAGFDPQVIQLAPQLTSAINLVAAGLG 240 KSL LQDLA ENFIMVPRGKGSALYD+IFSACQAAGFDPQVIQLAPQLTSAINLVA+GLG Sbjct: 181 KSLRLQDLASENFIMVPRGKGSALYDSIFSACQAAGFDPQVIQLAPQLTSAINLVASGLG 240 Query: 241 ISIVPEAIEQVQLAQVRYIDIREPAPRAQLSLAYHRQSIAASRFAAHLQRSLKRSA 296 ISIVPEAIEQVQLAQVRY++I EPAPRAQLSLAYHRQSIAASRFAAHLQRSL+R+ Sbjct: 241 ISIVPEAIEQVQLAQVRYVEIVEPAPRAQLSLAYHRQSIAASRFAAHLQRSLRRAG 296 >ref|YP_001583870.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|YP_001948993.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] ref|ZP_03569035.1| HTH-type transcriptional regulator AlsR (Als operon regulatoryprotein) [Burkholderia multivorans CGD2M] ref|ZP_03575680.1| HTH-type transcriptional regulator AlsR (Als operon regulatoryprotein) [Burkholderia multivorans CGD2] gb|ABX17578.1| transcriptional regulator, LysR family [Burkholderia multivorans ATCC 17616] dbj|BAG46457.1| LysR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gb|EEE09023.1| HTH-type transcriptional regulator AlsR (Als operon regulatoryprotein) [Burkholderia multivorans CGD2] gb|EEE14942.1| HTH-type transcriptional regulator AlsR (Als operon regulatoryprotein) [Burkholderia multivorans CGD2M] Length = 292 Score = 226 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 141/273 (51%), Positives = 190/273 (69%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 MELRHLRYFLAVA +FT+AAE +GIGQPPLS QIK LE E+G LF RT+ G EL+ Sbjct: 1 MELRHLRYFLAVAATSNFTKAAETLGIGQPPLSQQIKALENELGVELFRRTARGAELTTA 60 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 G VF A++ +D AE+A RAA++AA GE+G LR+GFT +A F+ VS L++FRE + Sbjct: 61 GEVFRDEARRVLDDAERASRAARRAARGEIGHLRVGFTGTAAFNSKVSDLLRRFREAFPQ 120 Query: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAELGVVELPAEKLKVALPRSHPLARR 180 E++L E + L A++ A +LD A VR + L + E E + VALP +H LARR Sbjct: 121 AELTLLEATSGVLFAELEAGRLDVALVRPRQRIAPVLRIAEWDEEPMFVALPVAHRLARR 180 Query: 181 KSLHLQDLAGENFIMVPRGKGSALYDNIFSACQAAGFDPQVIQLAPQLTSAINLVAAGLG 240 + + L +LA E+F+ VPR GS L+D+I +AC AAGF P++ Q APQ+ SA+ LVAAGLG Sbjct: 181 RQIALAELADESFVQVPREAGSTLFDDIVAACNAAGFQPRMAQPAPQMASAVTLVAAGLG 240 Query: 241 ISIVPEAIEQVQLAQVRYIDIREPAPRAQLSLA 273 +S+VP+AI QV++A V Y I + A RA+L +A Sbjct: 241 VSLVPDAITQVRIAGVVYRPIADAALRARLGVA 273 >ref|ZP_03582672.1| HTH-type transcriptional regulator AlsR (Als operon regulatoryprotein) [Burkholderia multivorans CGD1] gb|EEE02845.1| HTH-type transcriptional regulator AlsR (Als operon regulatoryprotein) [Burkholderia multivorans CGD1] Length = 292 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 141/273 (51%), Positives = 189/273 (69%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 MELRHLRYFLAVA +FT+AAE +GIGQPPLS QIK LE E+G LF RT+ G EL+ Sbjct: 1 MELRHLRYFLAVAATSNFTKAAETLGIGQPPLSQQIKALENELGVELFRRTARGAELTTA 60 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 G VF A++ +D AE+A RAA++AA GE+G LR+GFT +A F+ VS L++FRE + Sbjct: 61 GEVFRDEARRVLDDAERASRAARRAARGEIGHLRVGFTGTAAFNSKVSDLLRRFREAFPQ 120 Query: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAELGVVELPAEKLKVALPRSHPLARR 180 E++L E + L A++ A +LD A VR + L + E E + VALP +H LARR Sbjct: 121 AELTLLEATSGVLFAELEAGRLDVALVRPRQRIAPVLRIAEWDEEPMFVALPVAHRLARR 180 Query: 181 KSLHLQDLAGENFIMVPRGKGSALYDNIFSACQAAGFDPQVIQLAPQLTSAINLVAAGLG 240 + + L +LA E+F+ VPR GS L+D+I +AC AAGF P++ Q APQ+ SA+ LVAAGLG Sbjct: 181 RQIALAELADESFVQVPREAGSTLFDDIVAACNAAGFQPRMAQPAPQMASAVTLVAAGLG 240 Query: 241 ISIVPEAIEQVQLAQVRYIDIREPAPRAQLSLA 273 +S+VP+AI QV++A V Y I A RA+L +A Sbjct: 241 VSLVPDAITQVRIAGVVYRPIANAALRARLGVA 273 >ref|YP_001778916.1| LysR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gb|ACA94426.1| transcriptional regulator, LysR family [Burkholderia cenocepacia MC0-3] Length = 290 Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats. Identities = 141/273 (51%), Positives = 188/273 (68%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 MELRHLRYFLAVA +FT+AAE +GIGQPPLS QIK LE E+G LF RT+ G EL+ Sbjct: 1 MELRHLRYFLAVAAASNFTKAAETLGIGQPPLSQQIKALENELGVELFKRTARGAELTLA 60 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 G VF A++ +D AE+A RAA++AA GE G LR+GFT +A F+P VS +++FRE Sbjct: 61 GEVFAEEARRVLDDAERAARAARRAARGETGHLRVGFTGTAAFNPKVSDLIRRFREAFPD 120 Query: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAELGVVELPAEKLKVALPRSHPLARR 180 E++L E + LL + A +LD A VR +A L V + E + VALP +H LARR Sbjct: 121 AELTLQEATSGVLLEALEAGRLDVAIVRPERRVAATLRVADWDEEPMFVALPVAHRLARR 180 Query: 181 KSLHLQDLAGENFIMVPRGKGSALYDNIFSACQAAGFDPQVIQLAPQLTSAINLVAAGLG 240 + + L +LA E+F+ VPR G AL+D+I +ACQAAGF+P++ Q APQ+ SA+ LVAAGLG Sbjct: 181 RRIELAELADESFVQVPRAAGGALFDDIVAACQAAGFEPRMAQPAPQMASAVTLVAAGLG 240 Query: 241 ISIVPEAIEQVQLAQVRYIDIREPAPRAQLSLA 273 +S+VP+AI QVQ+ V Y RA+L++A Sbjct: 241 VSVVPKAITQVQVPGVVYRPFAGNRFRARLAIA 273 >ref|ZP_04943402.1| Transcriptional regulator [Burkholderia cenocepacia PC184] gb|EAY66573.1| Transcriptional regulator [Burkholderia cenocepacia PC184] Length = 290 Score = 224 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 140/273 (51%), Positives = 188/273 (68%) Query: 1 MELRHLRYFLAVAEQRSFTRAAEKVGIGQPPLSMQIKDLEAEIGGALFLRTSHGVELSEV 60 MELRHLRYFLAVA +FT+AAE +GIGQPPLS QIK LE E+G LF RT+ G EL+ Sbjct: 1 MELRHLRYFLAVAAASNFTKAAETLGIGQPPLSQQIKALENELGVELFKRTARGAELTLA 60 Query: 61 GRVFLPHAQKAVDGAEQALRAAQQAASGEVGLLRMGFTSSAVFHPLVSHALQQFRERHRK 120 G VF A++ +D AE+A RAA++AA GE G LR+GFT +A F+P VS +++FRE Sbjct: 61 GEVFAEEARRVLDDAERAARAARRAARGETGHLRVGFTGTAAFNPKVSDLIRRFREAFSD 120 Query: 121 LEISLSEGITEQLLADIAASQLDAAFVRIVTTPSAELGVVELPAEKLKVALPRSHPLARR 180 E++L E + LL + A +LD A VR +A L V + E + VALP +H LA+R Sbjct: 121 AELTLQEATSGVLLEALEAGRLDVAIVRPERRVAATLRVADWDEEPMFVALPVAHRLAQR 180 Query: 181 KSLHLQDLAGENFIMVPRGKGSALYDNIFSACQAAGFDPQVIQLAPQLTSAINLVAAGLG 240 + + L +LA E+F+ VPR G AL+D+I +ACQAAGF+P++ Q APQ+ SA+ LVAAGLG Sbjct: 181 RRIELAELADESFVQVPRAAGGALFDDIVAACQAAGFEPRMAQPAPQMASAVTLVAAGLG 240 Query: 241 ISIVPEAIEQVQLAQVRYIDIREPAPRAQLSLA 273 +S+VP+AI QVQ+ V Y RA+L++A Sbjct: 241 VSVVPKAITQVQVPGVVYRPFAGNRFRARLAIA 273