BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1425.p         (118 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773483.1| hypothetical protein Hsero_0045 [Herbaspiril...    78   4e-13

>ref|YP_003773483.1| hypothetical protein Hsero_0045 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61575.1| hypothetical protein Hsero_0045 [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 77/117 (65%), Positives = 92/117 (78%), Gaps = 12/117 (10%)

Query: 1   MKTRHILISSLFMALAGSAMAQNAPTNGTAVGAAPTAPMSATAATPSAVPSNDPFVQKRQ 60
           MK RHILISSLFMALAG AMAQ+            +AP++ ++   +  PSNDPFVQKRQ
Sbjct: 1   MKARHILISSLFMALAGGAMAQS------------SAPVAPSSTATNGAPSNDPFVQKRQ 48

Query: 61  ADADAKAEYKAQKKAAKQEYKADKKAAKAQLKQEKKDSTAQRNEALATSPATPTDKT 117
           ADADAKA+YKA+KKAAKQEYK D+  AKAQLKQE+++STAQRNEALAT+PA P DK+
Sbjct: 49  ADADAKAQYKAEKKAAKQEYKQDRAQAKAQLKQERQESTAQRNEALATTPAAPVDKS 105