BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1423.p (308 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06638638.1| LysR family transcriptional regulator [Serrat... 301 1e-79 ref|YP_003610522.1| LysR family transcriptional regulator [Enter... 289 4e-76 ref|YP_004502760.1| LysR family transcriptional regulator [Serra... 287 2e-75 ref|YP_001561394.1| LysR family transcriptional regulator [Delft... 284 1e-74 ref|ZP_06191401.1| transcriptional regulatory protein [Serratia ... 283 3e-74 >ref|ZP_06638638.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] gb|EFE96545.1| LysR family transcriptional regulator [Serratia odorifera DSM 4582] Length = 306 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 157/294 (53%), Positives = 211/294 (71%), Gaps = 3/294 (1%) Query: 2 DSFSGISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTAE 61 D +GISVF+ AVEAG+F AA RLH++RSAVGK+IARLE+RLGVRLF R TRSQSLT + Sbjct: 3 DRLNGISVFVTAVEAGNFALAASRLHLSRSAVGKTIARLEQRLGVRLFHRTTRSQSLTDD 62 Query: 62 GRAYYERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQL 121 G +YERCLRALEE+ +A+ L+ G+R+ +G++R+S PVLFGRLC+AP+L ELAR PQL Sbjct: 63 GALFYERCLRALEEIRTAETLLESGKRQVSGRLRVSMPVLFGRLCIAPILTELAREHPQL 122 Query: 122 DIVASFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPRH 181 ++ SF DR VD+I +G DLV+R+G +PD++ LVARR+G M ASP YLA+ G P Sbjct: 123 ELELSFNDRLVDMIEDGFDLVVRNGALPDSARLVARRLGNHHMAFCASPAYLARCGEPTT 182 Query: 182 FKDLARHHAILYSKT---TGWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLAHL 238 LA+H A+ Y ++ W + E+G+ R+ +RL DDL+A+A AT+AG G+ L Sbjct: 183 LDALAQHDAVAYLRSGTIRNWEVPLEQGETRLIAPRARLVMDDLQALADATMAGFGIGWL 242 Query: 239 PCWLIRDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALAAALP 292 PCWL+RD L + LV+++ + A + H WP T HLPL+VR +DALA LP Sbjct: 243 PCWLVRDQLLSGELVRVLQQYPGAEFNAHALWPHTPHLPLKVRLAVDALANKLP 296 >ref|YP_003610522.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gb|ADF59573.1| LysR family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 315 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 152/309 (49%), Positives = 210/309 (67%), Gaps = 3/309 (0%) Query: 3 SFSGISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTAEG 62 + I VF+ AVEAGSF +AA RLH++RSAVGKSIARLEERLGVRLF R TRSQSLT G Sbjct: 4 TLKDIPVFVAAVEAGSFAQAAIRLHLSRSAVGKSIARLEERLGVRLFHRTTRSQSLTDNG 63 Query: 63 RAYYERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQLD 122 +YERCLRALEE+ A++L+ G+++ +G++R++ PVLFGR CVAP+L+ELA+ P L+ Sbjct: 64 ALFYERCLRALEEIRGAESLLETGKQQISGRLRVAMPVLFGRQCVAPLLIELAQEHPGLE 123 Query: 123 IVASFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPRHF 182 + SF+DR VDL+ EG D+ +R+G + D+S LV RR+G M+L A+P+YL + G+P Sbjct: 124 LEMSFSDRVVDLVEEGFDMAVRNGTLQDSSVLVVRRLGEHRMVLCAAPEYLQKSGQPDTV 183 Query: 183 KDLARHHAILY---SKTTGWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLAHLP 239 DL H AI Y + W + D EG+ S L+ DDL+AI A +AG G+A LP Sbjct: 184 ADLPHHTAINYLRAGRVLPWQLMDNEGRSHTFTPRSSLNMDDLQAICDAALAGYGIAWLP 243 Query: 240 CWLIRDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALAAALPPLLGVGV 299 CW+ R ++ +L+ L+ +A D+H W T HLPLRVR ID LA+ LP +L + + Sbjct: 244 CWMARREIQQGKLIPLLKQAPDVRFDVHAVWQQTPHLPLRVRIAIDTLASRLPSVLSLDM 303 Query: 300 PRSRRGRGR 308 P ++ R + Sbjct: 304 PEPKKSRAK 312 >ref|YP_004502760.1| LysR family transcriptional regulator [Serratia sp. AS12] ref|YP_004507712.1| LysR family transcriptional regulator [Serratia sp. AS9] gb|AEF47451.1| transcriptional regulator, LysR family [Serratia sp. AS9] gb|AEF52403.1| transcriptional regulator, LysR family [Serratia sp. AS12] gb|AEG30110.1| transcriptional regulator, LysR family [Serratia sp. AS13] Length = 308 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 153/294 (52%), Positives = 203/294 (69%), Gaps = 3/294 (1%) Query: 2 DSFSGISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTAE 61 D +GISVF+ AV AGSF AA RLH++RSAVGK+IARLE+RLGVRLF R TRS SLT + Sbjct: 3 DRLNGISVFVTAVGAGSFALAASRLHLSRSAVGKTIARLEQRLGVRLFHRTTRSLSLTDD 62 Query: 62 GRAYYERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQL 121 G +YERCLRALEE+ +A+ L+ G+RE +G++R++ PVLFGR+C+AP+L ELAR P L Sbjct: 63 GALFYERCLRALEEIRTAETLLESGKREVSGKLRVTMPVLFGRICIAPLLTELAREHPGL 122 Query: 122 DIVASFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPRH 181 ++ SF DR VDLI +G DL +R+G + ++S+LVARR+G M L A+P YL + G P++ Sbjct: 123 ELELSFNDRVVDLIEDGFDLAIRNGELGNSSELVARRLGNHRMALCAAPAYLQRRGEPQN 182 Query: 182 FKDLARHHAILYSKT---TGWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLAHL 238 + LA H A+ Y + W I + +G R +RL DDL+AIA A VAG G+A L Sbjct: 183 IEQLAHHDAVAYVRAGMVRNWLIPEADGVTREMMPGTRLQMDDLQAIADAAVAGFGIAWL 242 Query: 239 PCWLIRDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALAAALP 292 PCWL+R L LV++M + D H WP T HLPL+VR +D LA+ LP Sbjct: 243 PCWLVRGQLIKGELVRIMRDRPGLFFDAHAVWPQTPHLPLKVRLAVDRLASKLP 296 >ref|YP_001561394.1| LysR family transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX33009.1| transcriptional regulator, LysR family [Delftia acidovorans SPH-1] Length = 307 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 157/297 (52%), Positives = 210/297 (70%), Gaps = 3/297 (1%) Query: 2 DSFSGISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTAE 61 D +G+S F+ + EAGSF +AAERL +TRSAVGK++ARLEERLG RLF R TRS LT + Sbjct: 7 DRLAGVSAFVASAEAGSFAQAAERLGLTRSAVGKAVARLEERLGARLFVRTTRSLGLTED 66 Query: 62 GRAYYERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQL 121 G+ +YERC +ALE+L++A+ ++ G+RE G++RIS PV+FGR VAP+L+ELA+ P+L Sbjct: 67 GQMFYERCAQALEDLDAARHMLEAGRREVVGRLRISAPVVFGRHHVAPLLLELAQLHPRL 126 Query: 122 DIVASFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPRH 181 I ASFTDR++D +G+DL +RSG +PD+ LVARR+G QTM+L ASP YL HG PR Sbjct: 127 RIEASFTDRQLDFADDGIDLAIRSGELPDSDWLVARRLGMQTMVLCASPAYLQAHGAPRS 186 Query: 182 FKDLARHHAILYSKT---TGWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLAHL 238 DLA H I Y ++ W + E+G + + L FDD+E IA AT+ GAGLAH+ Sbjct: 187 VADLAGHRCIAYMRSGRAAPWWLAGEDGSLAAPVLEPALGFDDIETIATATLQGAGLAHM 246 Query: 239 PCWLIRDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALAAALPPLL 295 P W +R L + LV+L+P+ A I +H+ WP TR LP R+R IDAL AA+PPLL Sbjct: 247 PLWRVRSALDSGALVRLLPDVPAARIPLHVLWPRTRFLPYRLRVTIDALLAAIPPLL 303 >ref|ZP_06191401.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gb|EFA15913.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 308 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 151/294 (51%), Positives = 201/294 (68%), Gaps = 3/294 (1%) Query: 2 DSFSGISVFIQAVEAGSFIRAAERLHVTRSAVGKSIARLEERLGVRLFQRNTRSQSLTAE 61 D +GISVF+ AV AGSF AA RLH++RSAVGK+IARLE+RL VRLF R TRS SLT + Sbjct: 3 DRLNGISVFVTAVGAGSFALAANRLHLSRSAVGKTIARLEQRLSVRLFHRTTRSLSLTDD 62 Query: 62 GRAYYERCLRALEELESAQALVGDGQREPAGQVRISTPVLFGRLCVAPVLVELARRWPQL 121 G +YERCLRALEE+ +A+ L+ G+RE +G++R++ PVLFGR+C+AP+L ELAR P L Sbjct: 63 GALFYERCLRALEEIRTAETLLESGKREVSGRLRVTMPVLFGRICIAPLLTELAREHPGL 122 Query: 122 DIVASFTDRRVDLIGEGVDLVLRSGPMPDTSDLVARRMGAQTMMLYASPDYLAQHGRPRH 181 ++ SF DR VDLI +G DL +R+G + ++S LVARR+G M L A+P YL + G P++ Sbjct: 123 ELELSFNDRVVDLIEDGFDLAIRNGELGNSSGLVARRLGNHRMALCAAPAYLQRRGEPQN 182 Query: 182 FKDLARHHAILYSKT---TGWPIRDEEGKVRMAPVTSRLHFDDLEAIAAATVAGAGLAHL 238 + LA+H A+ Y + W I + +G R +RL DDL+AI A VAG G+A L Sbjct: 183 IEQLAQHDAVAYVRAGVVRNWLIPEADGVTREMMPGTRLQMDDLQAIVDAAVAGFGIAWL 242 Query: 239 PCWLIRDHLKAARLVKLMPEASFATIDMHLAWPPTRHLPLRVRTVIDALAAALP 292 PCWL+R L LV++M + D H WP T HLPL+VR +D LA+ LP Sbjct: 243 PCWLVRGQLIKGELVRVMRDRPGLFFDAHAVWPQTPHLPLKVRLAVDLLASKLP 296