BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1420.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775549.1| hypothetical protein Hsero_2142 [Herbaspiril...    56   1e-06
ref|YP_001099850.1| hypothetical protein HEAR1560 [Herminiimonas...    56   2e-06
ref|YP_004750755.1| hypothetical protein CFU_0094 [Collimonas fu...    54   7e-06

>ref|YP_003775549.1| hypothetical protein Hsero_2142 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63641.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 93

 Score = 56.2 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/83 (54%), Positives = 57/83 (68%)

Query: 8  KNLFAGLLLTTAVGAAMAEAPYPVESQFVSTKTRADLIAELQQARANGEILVTDQYPMDQ 67
          KN+     L  A GAAMAEAPYP E+ F STKTRAD+ AEL +ARANGEI V ++YP+  
Sbjct: 4  KNIVVAASLLAAAGAAMAEAPYPPETAFHSTKTRADVQAELVRARANGEIAVRNEYPIVH 63

Query: 68 PVVSTRTRAEVIAELQQARATGQ 90
             ST +R +V  +L+QA +T Q
Sbjct: 64 QAPSTLSRQDVQNQLRQASSTAQ 86


>ref|YP_001099850.1| hypothetical protein HEAR1560 [Herminiimonas arsenicoxydans]
 emb|CAL61723.1| conserved hypothetical protein [Herminiimonas arsenicoxydans]
          Length = 114

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 22  AAMAEAPYPVESQFVSTKTRADLIAELQQARANGEILVTDQ-YPMDQPVVSTRTRAEVIA 80
           A   E+ YP+   F STKTRA++ AELQQAR  G +  TD  YP    V S++TRA+V  
Sbjct: 34  AQAEESNYPILPSFASTKTRAEVKAELQQAREKGLLTTTDSGYPKLPVVTSSKTRAQVKT 93

Query: 81  ELQQARATGQLLVTDRDQ 98
           EL+Q++A+G+    +++Q
Sbjct: 94  ELEQSKASGEFKRLEKEQ 111


>ref|YP_004750755.1| hypothetical protein CFU_0094 [Collimonas fungivorans Ter331]
 gb|AEK59932.1| hypothetical protein CFU_0094 [Collimonas fungivorans Ter331]
          Length = 135

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 8/105 (7%)

Query: 33  SQFVSTKTRADLIAELQQARANGEI-LVTDQYPM-----DQPVVSTRTRAEVIAELQQAR 86
           S  V+  TRA + AEL QARA G++     QYP+      Q    T+TRAEV AEL +AR
Sbjct: 22  SDNVTPLTRAQVQAELAQARAAGQLDFAGSQYPVFLSSNAQSSAPTKTRAEVQAELAKAR 81

Query: 87  ATGQLLVTDRDQDVKAVASA--KTRDEVRAELVQARNNGELAISN 129
           A G+L        V  V++A  K+R EVRAEL  ARN+G++  +N
Sbjct: 82  AAGELDFAGSQYPVFTVSNAPGKSRAEVRAELADARNSGQINFAN 126