BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1414.p (299 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773478.1| LysR family transcription regulator protein ... 516 e-144 gb|EFV87680.1| LysR-family transcriptional activator [Achromobac... 285 4e-75 ref|YP_002007839.1| regulatory protein, hth LysR, substrate-bind... 285 5e-75 ref|NP_880700.1| LysR family transcriptional activator [Bordetel... 284 1e-74 ref|YP_583943.1| LysR family transcriptional regulator [Cupriavi... 283 3e-74 >ref|YP_003773478.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61570.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 268/299 (89%), Positives = 286/299 (95%), Gaps = 1/299 (0%) Query: 1 MDIRALRYFTETVRLASFSRAADALHVTQSTVSKMVRQLEDEVDAPLLVRDGRRLQLTDT 60 MDIRALRYFTETVR +SFSRAADALHVTQSTVSKMVRQLE+EVDAPLL+RDGRRLQLTDT Sbjct: 1 MDIRALRYFTETVRHSSFSRAADALHVTQSTVSKMVRQLEEEVDAPLLIRDGRRLQLTDT 60 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMINILCTPVLKAFRERHPEIA 120 GRVVYEQGQQILA+MQRL AEVRDTKALR GRLEIGIPPMINILCTPVLKAFRERHP+IA Sbjct: 61 GRVVYEQGQQILAAMQRLHAEVRDTKALRSGRLEIGIPPMINILCTPVLKAFRERHPDIA 120 Query: 121 IVLKEDTGPQIEERVANGELEIGMTVLPADPELELQTLPVARYPMWAVAQAGRFQKNRAT 180 +VL+EDTGPQIE+RVANGELEIGMTVLPADPEL L+TLPVA YPMWAVAQAG FQKNRA+ Sbjct: 121 VVLQEDTGPQIEQRVANGELEIGMTVLPADPELGLETLPVASYPMWAVAQAGSFQKNRAS 180 Query: 181 LRCAQLDGMPLVLLNNEFGLTRSLRGMFGELGIRPEIVAQSAQWDWLVAMALAGMGAALL 240 LRCAQLDGMPLVLLNNEFGLTRSLRG+F E GI+PEIVAQSAQWDWLVAMALAGMG ALL Sbjct: 181 LRCAQLDGMPLVLLNNEFGLTRSLRGVFREHGIKPEIVAQSAQWDWLVAMALAGMGTALL 240 Query: 241 PEPFIHRLATDQLQAVRLVEPEVQWQVAYVTRGGGYLSHAARAWMALSEELFAGGRVRR 299 PEPFIHRLAT QLQAVRLVEPEVQW+VAYVTR GGYLSHAA AWMA+S +LFAGG++R+ Sbjct: 241 PEPFIHRLATQQLQAVRLVEPEVQWKVAYVTR-GGYLSHAAHAWMAVSAQLFAGGKLRK 298 >gb|EFV87680.1| LysR-family transcriptional activator [Achromobacter xylosoxidans C54] Length = 301 Score = 285 bits (730), Expect = 4e-75, Method: Composition-based stats. Identities = 154/300 (51%), Positives = 207/300 (69%), Gaps = 1/300 (0%) Query: 1 MDIRALRYFTETVRLASFSRAADALHVTQSTVSKMVRQLEDEVDAPLLVRDGRRLQLTDT 60 MD+RALRYF ETVR ASF++AA AL VTQSTVSKM+RQLEDE PLLVRDG + TDT Sbjct: 1 MDVRALRYFVETVRHASFTQAAKALFVTQSTVSKMIRQLEDETGTPLLVRDGHTARPTDT 60 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMINILCTPVLKAFRERHPEIA 120 GRV+Y++G Q+L +M++L E+R T L+ G LE+GIPPMIN+L TPV+K FRE HP I Sbjct: 61 GRVMYQRGLQVLETMRQLTEEMRQTAELQRGSLEVGIPPMINLLFTPVVKRFRELHPGIH 120 Query: 121 IVLKEDTGPQIEERVANGELEIGMTVLPADPELELQTLPVARYPMWAVAQAGRFQKNRAT 180 + L+E TG +EE VA+GELE+G T+LP P+ L +P+W + + + Sbjct: 121 LTLREGTGRAVEELVASGELEVGATILPIVPDSGLAARAFGSHPIWVIGPPDAAWAGKTS 180 Query: 181 LRCAQLDGMPLVLLNNEFGLTRSLRGMFGELGIRPEIVAQSAQWDWLVAMALAGMGAALL 240 L + L L++ ++F +TR LR F + G++P I AQSA WD+LVAMA AG+GAALL Sbjct: 181 LPLSALRDTRLLIPTDDFAMTRRLRQAFADAGLQPGIAAQSAHWDFLVAMASAGLGAALL 240 Query: 241 PEPFIHRLATDQLQAVRLVEPEVQWQVAYVTRGGGYLSHAARAWMALSEELF-AGGRVRR 299 PEP + R+ T L RL + +QW+V ++ + GYLS+AARAW+ + +E+ AG RV R Sbjct: 241 PEPLMRRMKTRGLSTARLAKSGLQWEVGHIWQQSGYLSYAARAWLQVCDEVLGAGKRVGR 300 >ref|YP_002007839.1| regulatory protein, hth LysR, substrate-binding [Cupriavidus taiwanensis LMG 19424] emb|CAQ71782.1| putative regulatory protein, HTH LysR, substrate-binding [Cupriavidus taiwanensis LMG 19424] Length = 301 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 152/297 (51%), Positives = 199/297 (67%), Gaps = 1/297 (0%) Query: 1 MDIRALRYFTETVRLASFSRAADALHVTQSTVSKMVRQLEDEVDAPLLVRDGRRLQLTDT 60 +DIRALRYF ET RL SF++AA +L VTQST+SKMVRQLEDE+ PLL+R+G+ ++LTD Sbjct: 3 IDIRALRYFVETARLRSFTQAASSLFVTQSTISKMVRQLEDEIGQPLLIREGKSVRLTDV 62 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMINILCTPVLKAFRERHPEIA 120 GRVVYE+GQ+ L + RL EV D +L G+L +GIPPM+N+ +P + AFR+R+P ++ Sbjct: 63 GRVVYERGQEALGVVHRLTLEVSDLSSLGRGQLTVGIPPMVNLFFSPAVSAFRQRYPNLS 122 Query: 121 IVLKEDTGPQIEERVANGELEIGMTVLPADPELELQTLPVARYPMWAVAQAGRFQKNRAT 180 + L E G +E+ VA+GELE+G TVLP D L L+T RYP+WAV T Sbjct: 123 LTLDEHGGQVVEQLVASGELEVGATVLPGDSGLSLETRQFGRYPIWAVGPRKAAWARGRT 182 Query: 181 LRCAQLDGMPLVLLNNEFGLTRSLRGMFGELGIRPEIVAQSAQWDWLVAMALAGMGAALL 240 + A L PLV+L +F LTR LR F E I P +VA+S WD+L +MA AG+G L Sbjct: 183 VSLAALRDEPLVMLTEDFSLTRKLRQAFLEARIEPRVVARSGHWDFLASMAAAGLGTTFL 242 Query: 241 PEPFIHRL-ATDQLQAVRLVEPEVQWQVAYVTRGGGYLSHAARAWMALSEELFAGGR 296 P+P RL A D L RL EP V W +A++ G YLSHAARAW+A+ EE+ GR Sbjct: 243 PQPLAERLQAQDTLAMARLTEPAVDWTMAHIWSPGRYLSHAARAWLAVCEEVLGTGR 299 >ref|NP_880700.1| LysR family transcriptional activator [Bordetella pertussis Tohama I] ref|NP_888405.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE42311.1| putative LysR-family transcriptional activator [Bordetella pertussis Tohama I] emb|CAE32357.1| putative LysR-family transcriptional activator [Bordetella bronchiseptica RB50] gb|AEE67316.1| LysR family transcriptional activator [Bordetella pertussis CS] Length = 303 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 155/299 (51%), Positives = 197/299 (65%) Query: 1 MDIRALRYFTETVRLASFSRAADALHVTQSTVSKMVRQLEDEVDAPLLVRDGRRLQLTDT 60 MD+RALRYF ETVR ASF++AA AL VTQSTVSKM+RQLEDEV PLL+RDG + TDT Sbjct: 1 MDVRALRYFVETVRTASFTQAARALFVTQSTVSKMIRQLEDEVGTPLLIRDGHTARPTDT 60 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMINILCTPVLKAFRERHPEIA 120 GR+VYE+G IL +M++LDAEVR+ L+ G LE+GIPPMIN+L TPV+K FRERHP I Sbjct: 61 GRIVYERGLHILGAMRQLDAEVREAVDLQRGELEVGIPPMINLLFTPVVKRFRERHPHIR 120 Query: 121 IVLKEDTGPQIEERVANGELEIGMTVLPADPELELQTLPVARYPMWAVAQAGRFQKNRAT 180 + L+EDTG +E VA GELE+G TVLP LQ Y +W + + Sbjct: 121 LSLREDTGQAVERLVAAGELEVGATVLPIQDPGPLQATRFGSYALWVIGPPAAAWAGKTA 180 Query: 181 LRCAQLDGMPLVLLNNEFGLTRSLRGMFGELGIRPEIVAQSAQWDWLVAMALAGMGAALL 240 L L +PL+L ++F LTR LR + G P I AQSA WD+L AMA A +G ALL Sbjct: 181 LPLTALRDLPLLLPTDDFALTRRLRQACAQAGFAPRIAAQSAHWDFLAAMASADLGVALL 240 Query: 241 PEPFIHRLATDQLQAVRLVEPEVQWQVAYVTRGGGYLSHAARAWMALSEELFAGGRVRR 299 PEP + RL T L RL + +QW++ ++ YLSHAARAW+ ++ E+ G+ R Sbjct: 241 PEPLVQRLKTRGLSTARLAKAGLQWEIGHIRVRDRYLSHAARAWLEVATEVLGNGQPAR 299 >ref|YP_583943.1| LysR family transcriptional regulator [Cupriavidus metallidurans CH34] gb|ABF08674.1| transcriptional regulator, LysR-family [Cupriavidus metallidurans CH34] Length = 296 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 146/294 (49%), Positives = 199/294 (67%), Gaps = 1/294 (0%) Query: 1 MDIRALRYFTETVRLASFSRAADALHVTQSTVSKMVRQLEDEVDAPLLVRDGRRLQLTDT 60 +DIRALRYF ET RL SF++AA +L VTQST+SKMV+QLEDEV PLL+R+G+ ++LTD Sbjct: 3 IDIRALRYFVETARLRSFTQAASSLFVTQSTISKMVKQLEDEVGQPLLIREGKTVRLTDV 62 Query: 61 GRVVYEQGQQILASMQRLDAEVRDTKALRCGRLEIGIPPMINILCTPVLKAFRERHPEIA 120 G+VVY++GQ+ L + RL EV D +L G+L +G+PPM+N+ +P + AFR R+P + Sbjct: 63 GKVVYDRGQEALGVVHRLTLEVADLSSLGRGQLTVGVPPMVNLFFSPAVSAFRRRYPNLQ 122 Query: 121 IVLKEDTGPQIEERVANGELEIGMTVLPADPELELQTLPVARYPMWAVAQAGRFQKNRAT 180 + L E G +E++VA+GELE+G TVLP D L L+T A+YP+WAV + T Sbjct: 123 LNLSEHGGKIVEQQVAHGELEVGATVLPGDSGLNLETRQFAKYPIWAVGPHRAAWASGRT 182 Query: 181 LRCAQLDGMPLVLLNNEFGLTRSLRGMFGELGIRPEIVAQSAQWDWLVAMALAGMGAALL 240 + A L PLV+L +EF LTR LR F + P +VAQS WD+L +MA AG+G L Sbjct: 183 VTLAALRDEPLVMLTDEFSLTRMLRQAFTDARFEPHVVAQSGHWDFLASMAAAGLGTTFL 242 Query: 241 PEPFIHRLAT-DQLQAVRLVEPEVQWQVAYVTRGGGYLSHAARAWMALSEELFA 293 PEP + RL + D+L RL EP V W +A++ G YLSHAARAW+ + EE+ Sbjct: 243 PEPLLSRLESRDKLAVARLTEPTVDWALAHIWSPGRYLSHAARAWLEVCEEVMG 296