BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1412.p (579 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane pr... 662 0.0 ref|YP_003910988.1| methyl-accepting chemotaxis sensory transduc... 482 e-134 ref|YP_002908141.1| methyl-accepting chemotaxis sensory transduc... 468 e-129 ref|YP_001117186.1| methyl-accepting chemotaxis sensory transduc... 467 e-129 ref|YP_002907549.1| methyl-accepting chemotaxis sensory transduc... 455 e-126 >ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66110.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 662 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 444/582 (76%), Positives = 479/582 (82%), Gaps = 3/582 (0%) Query: 1 MFGSMTVGRKLGLAFLSMVVVSLAVSSLSLFNFNRLEGASAMNVHTYEVMGAADDMLINM 60 M GSMTVGRKLGLAFL +VVV+L SSLSL NFNRLE ASAMN+HTY+VMG ADDML+NM Sbjct: 1 MSGSMTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEDASAMNIHTYQVMGKADDMLLNM 60 Query: 61 VNIETGIRGYVASGNEAFLDPYLGGRKAFSKAFDQAKALTADNPVQQKRLTEMLELTNKI 120 VNIETGIRGYVASGNEAFLDPY GGRK F AFD AK+LTADNPVQQKRL EM EL+NKI Sbjct: 61 VNIETGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRLAEMQELSNKI 120 Query: 121 EEVDQTLIKLRKQANASASTQDLQTYFGATHDKVFMDRFRGLQSEFVKAEESLLKERGEQ 180 EE+DQ LIKLRK+ANAS S Q LQTYFGATHDK+FMDRFR +Q EFV AEESLLKERGE Sbjct: 121 EEIDQNLIKLRKEANASGSQQALQTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERGEL 180 Query: 181 VRELSSATFAVLIGGGALTVLLAIVAGLAITRSILKALGGEPAAAALVAQHIAAGDLTVP 240 VR LS +T V+I GALTVLLAI AGL ITRSI+ ALGGEP AAA VAQ IAAGDLTV Sbjct: 181 VRSLSKSTLIVMIAAGALTVLLAIGAGLLITRSIINALGGEPGAAADVAQQIAAGDLTVA 240 Query: 241 VPLKHNDRSSLMASLASMREQLTTIVRGIQTSGESISVAAGEIATGNTDLSQRTEQQAAS 300 VPLK ND SLMASL SMREQLTTIVRGIQTSGESISVAA EIATGNTDLSQRTE+QAAS Sbjct: 241 VPLKPNDSHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQAAS 300 Query: 301 LEETASSMEELTSTVRQNSDNARQGNVVAEDASALALKGGEVVGRVISTMNEISDSSSKV 360 LEETASSMEELTSTVRQNSDNARQ N +AE+AS LA KGGEVV RVI TMNEISDSSSKV Sbjct: 301 LEETASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSSSKV 360 Query: 361 SEIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLI 420 S+IITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAK++K LI Sbjct: 361 SDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVKDLI 420 Query: 421 DDSVKTVGEGGVLVEQAGVTMERVVGSVRKVAEIVGEISLASREQTAGIEQVNQALGQMD 480 S + V G LV +AG T+ VV +VR V +I+ EI+ AS EQT GIEQVNQAL QMD Sbjct: 421 TLSGERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALSQMD 480 Query: 481 QVTQQNAALVEQAAAAAQAMSEQATELRSAVGIFKTAGGV-VRPVPVV-RAAAAAKPAPK 538 QVTQQNAALVEQAAAAAQAMSEQATELRSAVG+FKT GG V+P PV R A PAPK Sbjct: 481 QVTQQNAALVEQAAAAAQAMSEQATELRSAVGVFKTGGGTAVQPRPVSPRPAKVVNPAPK 540 Query: 539 AVSRPSLPVAP-ARAAKAQPAAAQGPSSSYKKDAGEGDWETF 579 + + + P A A A + +SS K G+WETF Sbjct: 541 VGAAKTRALPPKAAATAHTANAVKKEASSPKAADASGEWETF 582 >ref|YP_003910988.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1003] gb|ADN61697.1| methyl-accepting chemotaxis sensory transducer [Burkholderia sp. CCGE1003] Length = 521 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 309/513 (60%), Positives = 389/513 (75%), Gaps = 1/513 (0%) Query: 4 SMTVGRKLGLAFLSMVVVSLAVSSLSLFNFNRLEGASAMNVHTYEVMGAADDMLINMVNI 63 SMTV RKLGLAF +V+++LA S++SL NF +L A+ NVH+Y+V+GA+DDML +MVN+ Sbjct: 3 SMTVSRKLGLAFGLVVLIALAGSAISLVNFLKLNQANGWNVHSYQVLGASDDMLTSMVNM 62 Query: 64 ETGIRGYVASGNEAFLDPYLGGRKAFSKAFDQAKALTADNPVQQKRLTEMLELTNKIEEV 123 ETG+RG+VASG E FL+PY GRK FS + D + LTADN QQ RL + ++ K+ +V Sbjct: 63 ETGVRGFVASGEERFLEPYNAGRKQFSDSLDVVRNLTADNAAQQGRLATLRDMHQKVADV 122 Query: 124 DQTLIKLRKQANASASTQD-LQTYFGATHDKVFMDRFRGLQSEFVKAEESLLKERGEQVR 182 D+ LI +R+ NA D L YF DK FMDR+R + +E AE SLL +R +V Sbjct: 123 DEKLIAMRRDVNAGKQPLDKLIDYFKQGDDKQFMDRYRAVSTELGSAERSLLDQRSGEVA 182 Query: 183 ELSSATFAVLIGGGALTVLLAIVAGLAITRSILKALGGEPAAAALVAQHIAAGDLTVPVP 242 L+++T L G +TVL++IV G+ ITR I++ALGGEPA AA AQ +A GDL + Sbjct: 183 SLTTSTKLTLAIAGIMTVLVSIVLGVFITRGIMRALGGEPADAAKAAQRVAQGDLDASIA 242 Query: 243 LKHNDRSSLMASLASMREQLTTIVRGIQTSGESISVAAGEIATGNTDLSQRTEQQAASLE 302 L NDRSSLMASL SMR+QL IV I ++ E+I+ +AGEIA GN DLSQRTE+QAASL+ Sbjct: 243 LTPNDRSSLMASLESMRQQLRAIVSDIHSTAEAITTSAGEIAQGNLDLSQRTEEQAASLQ 302 Query: 303 ETASSMEELTSTVRQNSDNARQGNVVAEDASALALKGGEVVGRVISTMNEISDSSSKVSE 362 ETA+SMEELTSTVRQN++NA+Q N +A +A +A++GGEVV +V+ +M IS SS KVS+ Sbjct: 303 ETAASMEELTSTVRQNTENAKQANALAGNACEVAMRGGEVVNQVVESMRAISSSSGKVSD 362 Query: 363 IITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLIDD 422 IITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA+AAKE+K LI Sbjct: 363 IITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSASAAKEVKELITR 422 Query: 423 SVKTVGEGGVLVEQAGVTMERVVGSVRKVAEIVGEISLASREQTAGIEQVNQALGQMDQV 482 S ++V +G VE+AG TM +V SVR+V +I+GEI+ AS EQ GIEQVN A+GQMD V Sbjct: 423 SAESVAQGSEQVERAGATMSDIVQSVRRVTDIMGEIASASDEQGTGIEQVNVAVGQMDSV 482 Query: 483 TQQNAALVEQAAAAAQAMSEQATELRSAVGIFK 515 TQQNAALVEQA+AAAQAM+ QAT LR AV +FK Sbjct: 483 TQQNAALVEQASAAAQAMTHQATSLRQAVSVFK 515 >ref|YP_002908141.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR30906.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 527 Score = 468 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 305/513 (59%), Positives = 387/513 (75%), Gaps = 1/513 (0%) Query: 4 SMTVGRKLGLAFLSMVVVSLAVSSLSLFNFNRLEGASAMNVHTYEVMGAADDMLINMVNI 63 +MTVG+KL AF ++++SL S++S+ NF RL A+ N+H+Y V+ A D+ML NMVN+ Sbjct: 3 NMTVGQKLTGAFGIVILISLIGSAISIVNFLRLNDANGWNIHSYRVLRANDEMLANMVNM 62 Query: 64 ETGIRGYVASGNEAFLDPYLGGRKAFSKAFDQAKALTADNPVQQKRLTEMLELTNKIEEV 123 ETG+RGYV SG++ FLDPY+ G+ F+K+++ LT+DN QQ+RL E+L+L NK+ V Sbjct: 63 ETGVRGYVISGDDKFLDPYVAGQGQFTKSYELIHGLTSDNAAQQQRLEELLQLRNKVGSV 122 Query: 124 DQTLIKLRKQANA-SASTQDLQTYFGATHDKVFMDRFRGLQSEFVKAEESLLKERGEQVR 182 + LI LR+ NA + L F DK FMDR+R + ++ AE++LL +R QV Sbjct: 123 AEKLIALRRDVNAGTQPLSALTDEFKLGKDKQFMDRYRAVSADVGNAEQALLDQRSGQVA 182 Query: 183 ELSSATFAVLIGGGALTVLLAIVAGLAITRSILKALGGEPAAAALVAQHIAAGDLTVPVP 242 +++AT L G +T+ LAIV G+ ITR IL+ALGGEPAAAA VA IA GDL+V P Sbjct: 183 TMTNATMFTLTAAGLVTITLAIVLGIVITRGILRALGGEPAAAASVASRIAQGDLSVAAP 242 Query: 243 LKHNDRSSLMASLASMREQLTTIVRGIQTSGESISVAAGEIATGNTDLSQRTEQQAASLE 302 ++ D+SSLMASL MR+QL IV GIQ+S ESI AAGEIA GN DLSQRTE+QAASLE Sbjct: 243 VRDKDQSSLMASLEGMRQQLRGIVAGIQSSAESIKSAAGEIAQGNLDLSQRTEEQAASLE 302 Query: 303 ETASSMEELTSTVRQNSDNARQGNVVAEDASALALKGGEVVGRVISTMNEISDSSSKVSE 362 ETA+SME+LTSTVRQN+D+A+Q N++A +A +A++GG VV +V+ +M IS+SS KVS+ Sbjct: 303 ETAASMEQLTSTVRQNTDSAKQANMLATNACDVAVRGGNVVDQVVESMKSISESSGKVSQ 362 Query: 363 IITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLIDD 422 IITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA+AAKEIK LI+ Sbjct: 363 IITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSASAAKEIKDLIES 422 Query: 423 SVKTVGEGGVLVEQAGVTMERVVGSVRKVAEIVGEISLASREQTAGIEQVNQALGQMDQV 482 SV V GG V +AG TM +V SVR+V +I+GEI+ AS EQ GIEQVN A+ QMD V Sbjct: 423 SVDHVATGGEQVNRAGTTMSEIVKSVRQVTDIMGEIASASDEQGTGIEQVNTAVSQMDAV 482 Query: 483 TQQNAALVEQAAAAAQAMSEQATELRSAVGIFK 515 TQQNAALVEQA+AAAQAM+EQA LR AV F+ Sbjct: 483 TQQNAALVEQASAAAQAMAEQAATLRDAVAFFR 515 >ref|YP_001117186.1| methyl-accepting chemotaxis sensory transducer [Burkholderia vietnamiensis G4] gb|ABO57721.1| methyl-accepting chemotaxis sensory transducer [Burkholderia vietnamiensis G4] Length = 522 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 304/514 (59%), Positives = 388/514 (75%), Gaps = 1/514 (0%) Query: 3 GSMTVGRKLGLAFLSMVVVSLAVSSLSLFNFNRLEGASAMNVHTYEVMGAADDMLINMVN 62 GSMTVGRKL AF +V++SL S++S+ NF +L A+ NVH+Y+V+ A DDML +MVN Sbjct: 2 GSMTVGRKLAAAFGIVVLISLIGSAISIVNFLKLNQANGWNVHSYQVLRANDDMLTSMVN 61 Query: 63 IETGIRGYVASGNEAFLDPYLGGRKAFSKAFDQAKALTADNPVQQKRLTEMLELTNKIEE 122 +ETG+RGYVA+G++ FL+PY G + F+K+FD ++LT+DN QQ+RL + ++ K+ E Sbjct: 62 METGVRGYVAAGDDRFLEPYKAGLRQFAKSFDVVRSLTSDNAAQQRRLETLRDMHRKVAE 121 Query: 123 VDQTLIKLRKQANASASTQD-LQTYFGATHDKVFMDRFRGLQSEFVKAEESLLKERGEQV 181 VD LI +R+ NA + L YF DK FMDR+R + +E +AE+SLL +R +V Sbjct: 122 VDDKLIAMRRDVNAGTQPANVLIDYFKQGDDKQFMDRYRAVAAELNEAEQSLLDQRSGEV 181 Query: 182 RELSSATFAVLIGGGALTVLLAIVAGLAITRSILKALGGEPAAAALVAQHIAAGDLTVPV 241 L++ T L G +TV+L+IV G ITR I+++LGGEPA AA VA IA G+L PV Sbjct: 182 ASLTALTKVTLAAAGVITVILSIVLGTVITRGIMRSLGGEPADAAAVAGRIAEGNLEAPV 241 Query: 242 PLKHNDRSSLMASLASMREQLTTIVRGIQTSGESISVAAGEIATGNTDLSQRTEQQAASL 301 P+ NDR SLMASL SMR QL+ IV IQ++ ESI+ +AGEIA GN DLSQRTE+QAASL Sbjct: 242 PVAPNDRGSLMASLESMRRQLSGIVSEIQSTAESITTSAGEIAQGNLDLSQRTEEQAASL 301 Query: 302 EETASSMEELTSTVRQNSDNARQGNVVAEDASALALKGGEVVGRVISTMNEISDSSSKVS 361 EETA+SME+LT+TVRQN++NA+Q N +A A +A++GGEVV V+ +M IS SS KV+ Sbjct: 302 EETAASMEQLTATVRQNTENAKQANALAGSACEVAMRGGEVVNEVVDSMRAISSSSGKVA 361 Query: 362 EIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLID 421 EII VIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AAKEIK LI+ Sbjct: 362 EIIAVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSANAAKEIKDLIN 421 Query: 422 DSVKTVGEGGVLVEQAGVTMERVVGSVRKVAEIVGEISLASREQTAGIEQVNQALGQMDQ 481 SV++V G VE+AG TM +V SVR+V +I+ EI+ AS EQ GIEQVN A+GQMD Sbjct: 422 GSVESVALGSQQVERAGATMSDIVQSVRRVTDIMNEIASASDEQGTGIEQVNVAVGQMDS 481 Query: 482 VTQQNAALVEQAAAAAQAMSEQATELRSAVGIFK 515 VTQQNAALVEQA+AAAQAM++QAT LR VG+F+ Sbjct: 482 VTQQNAALVEQASAAAQAMAQQATTLRDVVGVFR 515 >ref|YP_002907549.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] ref|YP_002909861.1| methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR32625.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] gb|ACR32699.1| Methyl-accepting chemotaxis sensory transducer [Burkholderia glumae BGR1] Length = 527 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 304/514 (59%), Positives = 388/514 (75%), Gaps = 1/514 (0%) Query: 5 MTVGRKLGLAFLSMVVVSLAVSSLSLFNFNRLEGASAMNVHTYEVMGAADDMLINMVNIE 64 +TVG+KL AF ++++SL S++S+ NF RL A+ N+H+Y V+ A D+ML NMVN+E Sbjct: 4 LTVGQKLAGAFGIVILISLIGSAISIVNFLRLNDANGWNIHSYRVLRANDEMLANMVNME 63 Query: 65 TGIRGYVASGNEAFLDPYLGGRKAFSKAFDQAKALTADNPVQQKRLTEMLELTNKIEEVD 124 TG+RGYV SG++ FLDPYL G+ F+KA++ + LT+DN QQ+RL E+L+L NK+ V Sbjct: 64 TGVRGYVISGDDKFLDPYLAGQGQFAKAYEVIRGLTSDNAAQQQRLEELLQLRNKVGSVA 123 Query: 125 QTLIKLRKQANA-SASTQDLQTYFGATHDKVFMDRFRGLQSEFVKAEESLLKERGEQVRE 183 + LI +R+ NA + L F + DK FMDR+R + ++ AE++LL +R +V Sbjct: 124 EKLIGMRRDVNAGTQPLSALTDEFKLSKDKQFMDRYRAVAADVGSAEQALLDQRSGEVAT 183 Query: 184 LSSATFAVLIGGGALTVLLAIVAGLAITRSILKALGGEPAAAALVAQHIAAGDLTVPVPL 243 +++AT L G +T+ LAIV G+ ITR IL+ALGGEPAAAA VA IA GDL+V P+ Sbjct: 184 MTTATMFTLTAAGLITITLAIVLGIVITRGILRALGGEPAAAASVASRIAQGDLSVAAPV 243 Query: 244 KHNDRSSLMASLASMREQLTTIVRGIQTSGESISVAAGEIATGNTDLSQRTEQQAASLEE 303 + D+SSLMASL MR+QL IV GIQ+S ESI AAGEIA GN DLSQRTE+QAASLEE Sbjct: 244 RDKDQSSLMASLEGMRQQLRGIVAGIQSSAESIKSAAGEIAQGNLDLSQRTEEQAASLEE 303 Query: 304 TASSMEELTSTVRQNSDNARQGNVVAEDASALALKGGEVVGRVISTMNEISDSSSKVSEI 363 TA+SME+LTSTVRQN+D+A+Q N++A +A +A++GG VV +V+ +M IS+SS KVS+I Sbjct: 304 TAASMEQLTSTVRQNTDSAKQANMLATNACDVAVRGGNVVDQVVESMKSISESSGKVSQI 363 Query: 364 ITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKLLIDDS 423 ITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA+AAKEIK LI+ S Sbjct: 364 ITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLAQRSASAAKEIKDLIERS 423 Query: 424 VKTVGEGGVLVEQAGVTMERVVGSVRKVAEIVGEISLASREQTAGIEQVNQALGQMDQVT 483 V V G V +AG TM +V SVR+V +I+GEI+ AS EQ GIEQVN A+ QMD VT Sbjct: 424 VDHVATGREQVNRAGATMSEIVKSVRQVTDIMGEIASASDEQGTGIEQVNTAVSQMDAVT 483 Query: 484 QQNAALVEQAAAAAQAMSEQATELRSAVGIFKTA 517 QQNAALVEQA+AAAQAM+EQA LR AV F+ A Sbjct: 484 QQNAALVEQASAAAQAMAEQAATLRDAVAFFRIA 517