BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1409.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773476.1| transcription regulator protein [Herbaspiril... 491 e-137 ref|YP_841808.1| LysR family transcriptional regulator [Ralstoni... 377 e-102 ref|YP_004663080.1| LysR family transcriptional regulator [Myxoc... 375 e-102 ref|YP_004682446.1| LysR family transcriptional regulator [Cupri... 374 e-101 ref|YP_001619602.1| LysR family transcriptional regulator [Soran... 372 e-101 >ref|YP_003773476.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61568.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 491 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 264/302 (87%), Positives = 284/302 (94%) Query: 23 IQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERSLGVRLLQRSTHAMKMTEDGERCY 82 +QTFVRIVEAGSLSAAAAQLATTQPT+SRRLQ LERSLGVRLLQRSTHAMKMTEDGERCY Sbjct: 1 MQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 60 Query: 83 ERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFGQKQLIAPLLQFMQRHPRITVEWL 142 ERAKELLAGWD+FE+ELRGARQHAEG LRVVVPHAFGQKQLI PL QFM++HPRITVEWL Sbjct: 61 ERAKELLAGWDDFENELRGARQHAEGALRVVVPHAFGQKQLIGPLAQFMRQHPRITVEWL 120 Query: 143 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPALLEGRALPRQPEELAD 202 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAP++L GR +PR P +LA+ Sbjct: 121 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPSVLAGRPMPRHPADLAE 180 Query: 203 FPWIAIPAFYRREITLTHATSGEQRQVAFRPQLVTDSLYALRNIAIEGMGVAVGSSWVLA 262 PWIAIPAFYRRE+TLTHA +GEQRQV+FRPQLVTDSLYALRN A+ G+GVAVGSSWVL Sbjct: 181 LPWIAIPAFYRREVTLTHAHTGEQRQVSFRPQLVTDSLYALRNTAVAGLGVAVGSSWVLN 240 Query: 263 EDVAAGRLVQLLPEWEPAPLPVSLMYPYARFYPARLRHFIDTMKEAMPAVVHKAVGKGAL 322 EDVAAGRLVQLLP+W+PAPLPV L+YPYARF PARLRHFIDTMKEAMPAVVH+AVG GA Sbjct: 241 EDVAAGRLVQLLPDWQPAPLPVCLLYPYARFQPARLRHFIDTMKEAMPAVVHQAVGWGAS 300 Query: 323 SS 324 S Sbjct: 301 PS 302 >ref|YP_841808.1| LysR family transcriptional regulator [Ralstonia eutropha H16] emb|CAJ97078.1| transcriptional regulator, LysR-family [Ralstonia eutropha H16] Length = 342 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 186/293 (63%), Positives = 238/293 (81%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERSLGVRLLQRSTHAMKMTED 77 DRIEL+QTFVRIVEAGSLS AAAQL TTQPTVSRRLQ LER LGVRLLQRSTHAMK+TED Sbjct: 28 DRIELLQTFVRIVEAGSLSMAAAQLQTTQPTVSRRLQTLERLLGVRLLQRSTHAMKLTED 87 Query: 78 GERCYERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFGQKQLIAPLLQFMQRHPRI 137 GERCYERAKEL+A W FE+++RG GTLRVVVPHAFGQ+ L+ PL ++Q+ P + Sbjct: 88 GERCYERAKELVADWTMFEADVRGVGHAPAGTLRVVVPHAFGQELLVGPLAGYLQQCPEV 147 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPALLEGRALPRQP 197 +VEWLLHDR DFI++ IDCAI VGEV++P VVA+ LA+VPR + AP+L EG+ LPR+P Sbjct: 148 SVEWLLHDRTPDFIAEAIDCAIHVGEVHEPGVVAVRLADVPRAVIAAPSLFEGKPLPRRP 207 Query: 198 EELADFPWIAIPAFYRREITLTHATSGEQRQVAFRPQLVTDSLYALRNIAIEGMGVAVGS 257 E+L D PW+A+ FYR E+ L + + ++ +AF+P++ TDSLYAL + G+GVAVGS Sbjct: 208 EDLEDLPWLALRTFYRNEVVLQNTQTLARQGIAFQPRMSTDSLYALHSATRLGLGVAVGS 267 Query: 258 SWVLAEDVAAGRLVQLLPEWEPAPLPVSLMYPYARFYPARLRHFIDTMKEAMP 310 +W+ A+D+A+GRL+ LLP+W+ PLP+ L+YPYARFYPA+LR F+D M++A+P Sbjct: 268 AWIFADDIASGRLLHLLPQWQADPLPIYLVYPYARFYPAKLRLFVDAMRQAIP 320 >ref|YP_004663080.1| LysR family transcriptional regulator [Myxococcus fulvus HW-1] gb|AEI62002.1| LysR family transcriptional regulator [Myxococcus fulvus HW-1] Length = 298 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 186/294 (63%), Positives = 239/294 (81%) Query: 23 IQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERSLGVRLLQRSTHAMKMTEDGERCY 82 +QTF+RIV+AGSLS+AAAQL TTQPTVSRRLQALERSLG+RLLQRSTHAMK+TEDG RCY Sbjct: 1 MQTFIRIVDAGSLSSAAAQLGTTQPTVSRRLQALERSLGLRLLQRSTHAMKLTEDGARCY 60 Query: 83 ERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFGQKQLIAPLLQFMQRHPRITVEWL 142 RAKELLA W+ E++LRGA EGTLRVVVPHAFGQ+ L+ PL +++ RH R++VEWL Sbjct: 61 GRAKELLASWELLEADLRGASNEPEGTLRVVVPHAFGQQLLVEPLTEYLNRHARVSVEWL 120 Query: 143 LHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRMTVVAPALLEGRALPRQPEELAD 202 LHDRA DFI+ GIDCAI VGEV+DPSVVAI +AEVPR+ V AP++L G + P P+ LA Sbjct: 121 LHDRAVDFITDGIDCAIHVGEVHDPSVVAIRVAEVPRIVVAAPSVLGGSSPPTHPDALAR 180 Query: 203 FPWIAIPAFYRREITLTHATSGEQRQVAFRPQLVTDSLYALRNIAIEGMGVAVGSSWVLA 262 PW+++ FYR E++LTH +GE + + F+P+L TDSLYA+R+ A++G+GV V S+W+L Sbjct: 181 LPWLSLRTFYRNELSLTHVDTGEVQPITFQPRLSTDSLYAIRSAALKGLGVCVASAWLLQ 240 Query: 263 EDVAAGRLVQLLPEWEPAPLPVSLMYPYARFYPARLRHFIDTMKEAMPAVVHKA 316 ED+A GRLV L+P+W A LP+ L+YP+ARF+PARLR F++ M+ +PA + A Sbjct: 241 EDLAQGRLVHLVPQWRAASLPMYLLYPHARFHPARLRKFVELMRATIPAALAVA 294 >ref|YP_004682446.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI81214.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 340 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 191/311 (61%), Positives = 245/311 (78%), Gaps = 4/311 (1%) Query: 4 PLSPAPS--FSATGLT--DRIELIQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERS 59 P +PA +A G T DRIEL+QTFVRIVEAGSLS AAAQL TTQPTVSRRLQ LER Sbjct: 8 PRTPATQGRAAARGATSADRIELMQTFVRIVEAGSLSMAAAQLQTTQPTVSRRLQTLERL 67 Query: 60 LGVRLLQRSTHAMKMTEDGERCYERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFG 119 LGVRLLQRSTHAMK+TEDGERCYERAK L+A W FE+++RG GTLRVVVPHAFG Sbjct: 68 LGVRLLQRSTHAMKLTEDGERCYERAKGLVADWTMFEADVRGVGHAPAGTLRVVVPHAFG 127 Query: 120 QKQLIAPLLQFMQRHPRITVEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPR 179 Q+ L+ PL F+Q++P ++VEWLLHDR DFI++ IDCAI VGEV++P VVA+ LA+VPR Sbjct: 128 QELLVGPLAGFLQQYPEVSVEWLLHDRTPDFIAEAIDCAIHVGEVHEPGVVAVRLADVPR 187 Query: 180 MTVVAPALLEGRALPRQPEELADFPWIAIPAFYRREITLTHATSGEQRQVAFRPQLVTDS 239 + AP+L EG+ LPR+PE+L PW+A+ FYR E+ L + + ++ +AF+P++ TDS Sbjct: 188 AVIAAPSLFEGKPLPRRPEDLEGLPWLALRTFYRNEVVLQNTQTQARQGIAFQPRMSTDS 247 Query: 240 LYALRNIAIEGMGVAVGSSWVLAEDVAAGRLVQLLPEWEPAPLPVSLMYPYARFYPARLR 299 LYAL + G+GVAVGS+W+ A+D+A+GRL+ LLP+W+ PLP+ L+YPYARFYPA+LR Sbjct: 248 LYALHSATRLGLGVAVGSAWIFADDIASGRLLHLLPQWQADPLPIYLVYPYARFYPAKLR 307 Query: 300 HFIDTMKEAMP 310 F+D M++A+P Sbjct: 308 SFVDAMRQAIP 318 >ref|YP_001619602.1| LysR family transcriptional regulator [Sorangium cellulosum 'So ce 56'] emb|CAN99123.1| transcriptional regulator, LysR family [Sorangium cellulosum 'So ce 56'] Length = 350 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 195/319 (61%), Positives = 243/319 (76%), Gaps = 5/319 (1%) Query: 1 MTKPLSPAPSFSATGLTDRIELIQTFVRIVEAGSLSAAAAQLATTQPTVSRRLQALERSL 60 MT+P P+PS D I L+QTFVRIVEAGSLSAAA L TTQPTVSRRLQALERSL Sbjct: 35 MTRPAPPSPSS-----LDDIGLLQTFVRIVEAGSLSAAATLLGTTQPTVSRRLQALERSL 89 Query: 61 GVRLLQRSTHAMKMTEDGERCYERAKELLAGWDEFESELRGARQHAEGTLRVVVPHAFGQ 120 G+ LLQRSTH MK+TEDGERC+ERAK LLA + F S++RG R +GTLRVVVPHAFGQ Sbjct: 90 GLPLLQRSTHTMKLTEDGERCFERAKALLASLEAFASDMRGDRDQPDGTLRVVVPHAFGQ 149 Query: 121 KQLIAPLLQFMQRHPRITVEWLLHDRAADFISQGIDCAIQVGEVNDPSVVAIHLAEVPRM 180 QL+ PL +++R+PR++VEWLLHD +FI+ GIDCAI VG V DP+VVAI L EVPR+ Sbjct: 150 HQLVKPLADYLRRYPRVSVEWLLHDGQPNFIADGIDCAILVGAVADPAVVAIRLTEVPRI 209 Query: 181 TVVAPALLEGRALPRQPEELADFPWIAIPAFYRREITLTHATSGEQRQVAFRPQLVTDSL 240 AP++L A P P +LAD PW+A+ +YR ITLTHA+ GE+ ++A RP++ TDSL Sbjct: 210 VAAAPSVLGRAARPAHPSDLADMPWLALRTYYRDTITLTHASGGERVELAIRPRMSTDSL 269 Query: 241 YALRNIAIEGMGVAVGSSWVLAEDVAAGRLVQLLPEWEPAPLPVSLMYPYARFYPARLRH 300 YALR+ A+ G+GV V SSW+L +D+A RL+ L P W+ PLPV L+YP+ARFYPARLR Sbjct: 270 YALRSAALMGLGVCVASSWLLTDDLAQRRLLHLAPSWQADPLPVHLVYPHARFYPARLRR 329 Query: 301 FIDTMKEAMPAVVHKAVGK 319 FI+ M+E++PAVV A + Sbjct: 330 FIEVMRESVPAVVDGAAAR 348