BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1408.p (411 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773475.1| permease [Herbaspirillum seropedicae SmR1] >... 474 e-131 ref|YP_001619603.1| major facilitator superfamily permease [Sora... 386 e-105 ref|YP_001352263.1| major facilitator transporter [Janthinobacte... 377 e-102 ref|YP_370945.1| major facilitator transporter [Burkholderia sp.... 369 e-100 ref|YP_625238.1| major facilitator transporter [Burkholderia cen... 362 6e-98 >ref|YP_003773475.1| permease [Herbaspirillum seropedicae SmR1] gb|ADJ61567.1| permeases of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 412 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 368/412 (89%), Positives = 386/412 (93%), Gaps = 1/412 (0%) Query: 1 MNSIPKTHTAAPAAA-SSPAHGLSTGLIGLLATGAGLAVASLYYSQPMLGVLADDIGASE 59 MN+I KTHT A + AHGLS+ LI LLA+GAGLAVASLYYSQPMLGVLADDIGASE Sbjct: 1 MNTIQKTHTGHTGAQPGASAHGLSSSLILLLASGAGLAVASLYYSQPMLGVLADDIGASE 60 Query: 60 RAVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAILTVALLLAGAASGIATLLAA 119 RAVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAILT ALLLAGAASG+ LLAA Sbjct: 61 RAVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAILTAALLLAGAASGVGALLAA 120 Query: 120 SLAIGLTATLAQDIVPAAATLAPEQHRGRIVGTVMTGLLLGILLSRVVSGFVAEHFGWRA 179 SLA+GLTATLAQDIVPAAA+LAPEQ RGR+VGTVMTGLLLGILLSRVVSGFVAEHFGWRA Sbjct: 121 SLAVGLTATLAQDIVPAAASLAPEQSRGRVVGTVMTGLLLGILLSRVVSGFVAEHFGWRA 180 Query: 180 MFVGASASIALIGLAAWRGLPRFHPTTHLSYGALLGSLGTLVRKHGALRRAALAQGLLSV 239 MFV A+ SIALIGLAAWRGLPRFHPTTHLSYGAL+ SL TL +KHGALRRAALAQGLLSV Sbjct: 181 MFVAAAVSIALIGLAAWRGLPRFHPTTHLSYGALMASLATLFKKHGALRRAALAQGLLSV 240 Query: 240 GFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAPLAGRISDKKGPELVTRLGVS 299 GFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAPLAGRISDKKGPELVTRLGV Sbjct: 241 GFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAPLAGRISDKKGPELVTRLGVG 300 Query: 300 LAALSFASMALSPWFSTQGQLVLLALAAIGFDLGVQATLVAHQTIVYSIEPGARSRLNAV 359 LA +SFA+MALSPWFSTQGQLVLLA+AA+GFDLGVQATLVAHQTIVYSIEPGARSRLNA+ Sbjct: 301 LAIVSFAAMALSPWFSTQGQLVLLAVAAVGFDLGVQATLVAHQTIVYSIEPGARSRLNAI 360 Query: 360 LFVGMFIGMAAGAALGSLALAQWGWIAVVALAVAAAVLALVVRMWPGAAKAR 411 LFVGMFIGMAAGAALGSL LAQWGWIAVVALA AA LALVVR+WPGAA+AR Sbjct: 361 LFVGMFIGMAAGAALGSLVLAQWGWIAVVALATLAAGLALVVRLWPGAARAR 412 >ref|YP_001619603.1| major facilitator superfamily permease [Sorangium cellulosum 'So ce 56'] emb|CAN99122.1| permease of the major facilitator superfamily [Sorangium cellulosum 'So ce 56'] Length = 415 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 301/408 (73%), Positives = 343/408 (84%), Gaps = 2/408 (0%) Query: 1 MNSIPKTHT--AAPAAASSPAHGLSTGLIGLLATGAGLAVASLYYSQPMLGVLADDIGAS 58 M++IP THT A ++ A L L+ LLATGAGLAVAS+YYSQPMLGVL +IGAS Sbjct: 1 MHAIPLTHTPPATQPLPAASAPPLPAALVLLLATGAGLAVASIYYSQPMLGVLGAEIGAS 60 Query: 59 ERAVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAILTVALLLAGAASGIATLLA 118 +RA+G+VP TQLGYALGILLLAPLGDRYDRRRIIL KAA+L ALLL GAA I TLL Sbjct: 61 DRALGLVPTLTQLGYALGILLLAPLGDRYDRRRIILAKAALLAGALLLGGAAHAIGTLLV 120 Query: 119 ASLAIGLTATLAQDIVPAAATLAPEQHRGRIVGTVMTGLLLGILLSRVVSGFVAEHFGWR 178 ASL GL ATLAQDIVPAAATLAPE HRG++VGTVMTGLLLGILLSRV+SGFVAE+FGWR Sbjct: 121 ASLVTGLAATLAQDIVPAAATLAPEAHRGKVVGTVMTGLLLGILLSRVISGFVAENFGWR 180 Query: 179 AMFVGASASIALIGLAAWRGLPRFHPTTHLSYGALLGSLGTLVRKHGALRRAALAQGLLS 238 A+FV A+ASIAL+G A WR LPRF PTT LSY ALLGSL L ++HGALRRA LAQGLLS Sbjct: 181 AVFVAAAASIALLGAAMWRSLPRFEPTTRLSYAALLGSLADLWKRHGALRRATLAQGLLS 240 Query: 239 VGFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAPLAGRISDKKGPELVTRLGV 298 VGFSAFWSTLAVMLHGAPFHLGSA AGAFGLAGAAGA+AAPLAGRI+D+ GPE VTR+G Sbjct: 241 VGFSAFWSTLAVMLHGAPFHLGSAVAGAFGLAGAAGAVAAPLAGRIADRSGPERVTRMGA 300 Query: 299 SLAALSFASMALSPWFSTQGQLVLLALAAIGFDLGVQATLVAHQTIVYSIEPGARSRLNA 358 +L+ ++FA+MALSP S G+L LL +A+ FDLG+QA LVAHQTIVY IEPGARSR+NA Sbjct: 301 ALSFVAFAAMALSPMLSAHGRLWLLGASAVAFDLGIQAALVAHQTIVYGIEPGARSRVNA 360 Query: 359 VLFVGMFIGMAAGAALGSLALAQWGWIAVVALAVAAAVLALVVRMWPG 406 VL VGMF+GMA+GAALGS+ A+WGW+AV ALA +AA AL+VR+WP Sbjct: 361 VLVVGMFVGMASGAALGSVLFARWGWLAVTALASSAAASALLVRLWPA 408 >ref|YP_001352263.1| major facilitator transporter [Janthinobacterium sp. Marseille] gb|ABR90969.1| transporter of the MFS superfamily [Janthinobacterium sp. Marseille] Length = 403 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 293/407 (71%), Positives = 337/407 (82%), Gaps = 7/407 (1%) Query: 4 IPKTHTAAPAAASSPAHGLSTGLIGLLATGAGLAVASLYYSQPMLGVLADDIGASERAVG 63 I THT A A A L LI LLATGAGL+VASLYYSQPMLGVL DI AS+R +G Sbjct: 4 IQSTHTQAEAPA------LPASLILLLATGAGLSVASLYYSQPMLGVLGADIHASDRMIG 57 Query: 64 MVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAILTVALLLAGAASGIATLLAASLAI 123 +VP TQLGYALGILLLAPLGDRYDRR IIL+KAA+L +ALL +G A GI+ LL +SL I Sbjct: 58 LVPTLTQLGYALGILLLAPLGDRYDRRSIILVKAALLALALLFSGLAPGISWLLLSSLVI 117 Query: 124 GLTATLAQDIVPAAATLAPEQHRGRIVGTVMTGLLLGILLSRVVSGFVAEHFGWRAMFVG 183 GLTAT+AQDIVPAAATLAPE HRG+IVGTVMTGLLLGILLSRV+SGF AE FGWR++++ Sbjct: 118 GLTATMAQDIVPAAATLAPESHRGKIVGTVMTGLLLGILLSRVISGFGAEAFGWRSVYIA 177 Query: 184 ASASIALIGLAAWRGLPRFHPTTHLSYGALLGSLGTLVRKHGALRRAALAQGLLSVGFSA 243 AS +A+I +A WRGLPRF PTT L+YG LLGS+ L R+HGALR+AALAQGLL++GFSA Sbjct: 178 ASVGVAMIAVATWRGLPRFQPTTQLAYGQLLGSMVQLWRRHGALRQAALAQGLLALGFSA 237 Query: 244 FWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAPLAGRISDKKGPELVTRLGVSLAAL 303 FWSTLAVMLHGAPFHLGSAAAG+FGLAGAAGALAAPLAG+++DK+GPELVTRLG LAA+ Sbjct: 238 FWSTLAVMLHGAPFHLGSAAAGSFGLAGAAGALAAPLAGKLADKRGPELVTRLGAGLAAV 297 Query: 304 SFASMALSPWFSTQGQLVLLALAAIGFDLGVQATLVAHQTIVYSIEPGARSRLNAVLFVG 363 SFA M L+P QL LL A +GFDLGVQATL+AHQTIVY I+PGARSRLNA+LF G Sbjct: 298 SFAVMLLAPMLPVHLQLALLVAATVGFDLGVQATLIAHQTIVYGIDPGARSRLNALLFTG 357 Query: 364 MFIGMAAGAALGSLALAQWGWIAVVALAVAAAVLALVVRMWPGAAKA 410 MFIGMA+GAALGSL L+Q+GW VV LA A++ L VR + GA+KA Sbjct: 358 MFIGMASGAALGSLLLSQFGWAGVVVLATVASLATLAVR-FAGASKA 403 >ref|YP_370945.1| major facilitator transporter [Burkholderia sp. 383] gb|ABB10301.1| Major facilitator superfamily (MFS_1) transporter [Burkholderia sp. 383] Length = 410 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 272/364 (74%), Positives = 307/364 (84%) Query: 41 LYYSQPMLGVLADDIGASERAVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAIL 100 LYY+QPMLG L D+GAS RA+G VP TQLGYALGILLLAPLGDR+DRRR+I+ KAA L Sbjct: 45 LYYAQPMLGALGPDLGASARAIGFVPTLTQLGYALGILLLAPLGDRFDRRRVIVTKAATL 104 Query: 101 TVALLLAGAASGIATLLAASLAIGLTATLAQDIVPAAATLAPEQHRGRIVGTVMTGLLLG 160 VALLLA A + LLAAS AIGL AT+AQD+VPAAATLA + HRGRIVGTVMTGLLLG Sbjct: 105 VVALLLAAIAPSLGPLLAASFAIGLAATMAQDVVPAAATLAHDAHRGRIVGTVMTGLLLG 164 Query: 161 ILLSRVVSGFVAEHFGWRAMFVGASASIALIGLAAWRGLPRFHPTTHLSYGALLGSLGTL 220 ILLSRVV+GFVAE GWRAMF A+AS+A+IG+ A RGLP F PTT L Y AL+GSLG L Sbjct: 165 ILLSRVVAGFVAETAGWRAMFALAAASVAVIGVVAARGLPHFEPTTRLPYRALIGSLGAL 224 Query: 221 VRKHGALRRAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAPL 280 R+H ALRRAALAQGLL++GFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAP+ Sbjct: 225 WRQHPALRRAALAQGLLAIGFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAPI 284 Query: 281 AGRISDKKGPELVTRLGVSLAALSFASMALSPWFSTQGQLVLLALAAIGFDLGVQATLVA 340 AGR++D GPE VTR+G+ +A +SFASMA +P S QLVLLA+A IGFDLGVQATL+A Sbjct: 285 AGRMADHHGPERVTRIGIGIATVSFASMAAAPLMSPHAQLVLLAVATIGFDLGVQATLIA 344 Query: 341 HQTIVYSIEPGARSRLNAVLFVGMFIGMAAGAALGSLALAQWGWIAVVALAVAAAVLALV 400 HQ IVY I+P +RSRLNAVLFVGMFIGMAAGAA+GSL LAQ GW AV ALAV ++ AL Sbjct: 345 HQAIVYRIDPASRSRLNAVLFVGMFIGMAAGAAIGSLLLAQLGWNAVTALAVVTSLAALA 404 Query: 401 VRMW 404 VR+W Sbjct: 405 VRIW 408 >ref|YP_625238.1| major facilitator transporter [Burkholderia cenocepacia AU 1054] ref|YP_839095.1| major facilitator transporter [Burkholderia cenocepacia HI2424] gb|ABF80265.1| major facilitator superfamily MFS_1 [Burkholderia cenocepacia AU 1054] gb|ABK12202.1| major facilitator superfamily MFS_1 [Burkholderia cenocepacia HI2424] Length = 412 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 277/364 (76%), Positives = 309/364 (84%) Query: 41 LYYSQPMLGVLADDIGASERAVGMVPMSTQLGYALGILLLAPLGDRYDRRRIILIKAAIL 100 LYY+QPMLG LA D+GAS RA+G VP TQLGYALGILLLAPLGDR+DRRR+I+ KAA L Sbjct: 47 LYYAQPMLGALAPDLGASARAIGFVPTLTQLGYALGILLLAPLGDRFDRRRVIVTKAAAL 106 Query: 101 TVALLLAGAASGIATLLAASLAIGLTATLAQDIVPAAATLAPEQHRGRIVGTVMTGLLLG 160 VALLLA A + LLAAS AIGL AT+AQD+VPAAATLA + HRGRIVGTVMTGLLLG Sbjct: 107 VVALLLASIAPSLGLLLAASFAIGLAATMAQDVVPAAATLAHDAHRGRIVGTVMTGLLLG 166 Query: 161 ILLSRVVSGFVAEHFGWRAMFVGASASIALIGLAAWRGLPRFHPTTHLSYGALLGSLGTL 220 ILLSRVV+GFVAE GWRAMF A+AS+A+IG A RGLPRF PTT L Y AL+GSLG L Sbjct: 167 ILLSRVVAGFVAETAGWRAMFALAAASVAVIGAVAARGLPRFEPTTRLPYRALIGSLGAL 226 Query: 221 VRKHGALRRAALAQGLLSVGFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAPL 280 R H ALRRAALAQGLL+VGFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAP+ Sbjct: 227 WRAHSALRRAALAQGLLAVGFSAFWSTLAVMLHGAPFHLGSAAAGAFGLAGAAGALAAPV 286 Query: 281 AGRISDKKGPELVTRLGVSLAALSFASMALSPWFSTQGQLVLLALAAIGFDLGVQATLVA 340 AGR++D GPE VTR+G+ +A LSFASMA +P S QLVLLA+A IGFDLGVQATL+A Sbjct: 287 AGRLADHHGPERVTRIGIGIATLSFASMAAAPLMSPHAQLVLLAVATIGFDLGVQATLIA 346 Query: 341 HQTIVYSIEPGARSRLNAVLFVGMFIGMAAGAALGSLALAQWGWIAVVALAVAAAVLALV 400 HQ+IVY I+P +RSRLNAVLFVGMFIGMAAGAA+GSL LAQ GW AV ALAVA ++ AL Sbjct: 347 HQSIVYRIDPASRSRLNAVLFVGMFIGMAAGAAIGSLLLAQLGWNAVTALAVATSLAALA 406 Query: 401 VRMW 404 VR+W Sbjct: 407 VRVW 410