BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1402.p         (145 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADI18848.1| hypothetical protein [uncultured beta proteobacte...   154   5e-36
ref|YP_004157377.1| trove domain-containing protein [Variovorax ...   150   5e-35
ref|ZP_03542450.1| TROVE domain protein [Comamonas testosteroni ...   149   1e-34
ref|ZP_05083069.1| trove domain protein [Pseudovibrio sp. JE062]...   146   1e-33
ref|ZP_06890520.1| TROVE domain protein [Methylosinus trichospor...   145   2e-33

>gb|ADI18848.1| hypothetical protein [uncultured beta proteobacterium HF0010_04H24]
          Length = 434

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/118 (63%), Positives = 94/118 (79%)

Query: 24  AAPAARIGGGGTDCSAPLRWLNERQQRADLVVLVSDNESWLRHHASGATETMRQWQQFKR 83
           AA  A IGGGGT+CSAPL  +N +Q+ ADLV+ VSDNESW+    SGAT TM QW  FK 
Sbjct: 308 AARLAAIGGGGTNCSAPLLRMNSKQELADLVIYVSDNESWIDAKRSGATATMGQWNVFKL 367

Query: 84  RNPKARLVCIDLAPYATSQAPESDDILNIGGFSDEVFKLLASFAAGQMQAGHWVQEIA 141
           RNP+A+LVCID++P+AT+QA E +DILNIGGFSD+VF+++A+FAAGQ+   HW  EIA
Sbjct: 368 RNPQAKLVCIDISPHATTQAMEREDILNIGGFSDDVFRIIAAFAAGQLDPAHWAGEIA 425


>ref|YP_004157377.1| trove domain-containing protein [Variovorax paradoxus EPS]
 gb|ADU39266.1| TROVE domain-containing protein [Variovorax paradoxus EPS]
          Length = 517

 Score =  150 bits (380), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 77/121 (63%), Positives = 89/121 (73%)

Query: 24  AAPAARIGGGGTDCSAPLRWLNERQQRADLVVLVSDNESWLRHHASGATETMRQWQQFKR 83
           AA  A +GGGGT CSAPL  LN+ + +ADLVVLVSDNESW        T TM++W  FK 
Sbjct: 396 AAKLAAVGGGGTSCSAPLALLNKEKAKADLVVLVSDNESWADRARGRGTTTMQEWAAFKE 455

Query: 84  RNPKARLVCIDLAPYATSQAPESDDILNIGGFSDEVFKLLASFAAGQMQAGHWVQEIAST 143
           RNP ARLVCID+ PYAT+QA E DD+LNIGGFSDEVFKLLA +AAG + A HWV  I  T
Sbjct: 456 RNPTARLVCIDIQPYATTQAQERDDVLNIGGFSDEVFKLLAVYAAGGLGADHWVGVIEET 515

Query: 144 A 144
           +
Sbjct: 516 S 516


>ref|ZP_03542450.1| TROVE domain protein [Comamonas testosteroni KF-1]
 gb|EED66736.1| TROVE domain protein [Comamonas testosteroni KF-1]
          Length = 525

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/121 (60%), Positives = 93/121 (76%)

Query: 24  AAPAARIGGGGTDCSAPLRWLNERQQRADLVVLVSDNESWLRHHASGATETMRQWQQFKR 83
           A   A+IGGGGT+CSAPL+ L + + R D+V++VSDNESW+     GATETM+QW++ K+
Sbjct: 401 ATRLAKIGGGGTNCSAPLKQLADEKARVDMVIMVSDNESWVDGVRRGATETMQQWERIKQ 460

Query: 84  RNPKARLVCIDLAPYATSQAPESDDILNIGGFSDEVFKLLASFAAGQMQAGHWVQEIAST 143
           RNP ARLVCID+ PY T+QA E DDILN+GGFSD VF ++ASFA G++ A HWV EI   
Sbjct: 461 RNPDARLVCIDIQPYGTTQAMERDDILNVGGFSDAVFDVVASFAEGRLGAEHWVGEIEKI 520

Query: 144 A 144
           A
Sbjct: 521 A 521


>ref|ZP_05083069.1| trove domain protein [Pseudovibrio sp. JE062]
 gb|EEA96694.1| trove domain protein [Pseudovibrio sp. JE062]
          Length = 519

 Score =  146 bits (369), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/109 (58%), Positives = 81/109 (74%)

Query: 32  GGGTDCSAPLRWLNERQQRADLVVLVSDNESWLRHHASGATETMRQWQQFKRRNPKARLV 91
           GGGT CSAPLRWLN+R+++ DLV+LVSDNESW        T  M++WQ+ KRRNP A+LV
Sbjct: 405 GGGTSCSAPLRWLNQRREKPDLVILVSDNESWADQCRGSTTGLMKEWQELKRRNPDAKLV 464

Query: 92  CIDLAPYATSQAPESDDILNIGGFSDEVFKLLASFAAGQMQAGHWVQEI 140
           CID+APY T+Q     D+LN+GGFSD VFK +A+F  G++ A  WV EI
Sbjct: 465 CIDIAPYGTTQMQSRPDVLNVGGFSDAVFKQIAAFVDGKLDADQWVSEI 513


>ref|ZP_06890520.1| TROVE domain protein [Methylosinus trichosporium OB3b]
 gb|EFH00996.1| TROVE domain protein [Methylosinus trichosporium OB3b]
          Length = 518

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/118 (61%), Positives = 88/118 (74%), Gaps = 1/118 (0%)

Query: 24  AAPAARIGGGGTDCSAPLRWLNERQQRADLVVLVSDNESWLRHHASG-ATETMRQWQQFK 82
           A   A IGGGGT+CSAPLR L   +   DLV+LVSDNESW+     G  T TM +WQ+ K
Sbjct: 396 AQKLASIGGGGTNCSAPLRKLVAERAEVDLVILVSDNESWVDARQGGRGTATMERWQELK 455

Query: 83  RRNPKARLVCIDLAPYATSQAPESDDILNIGGFSDEVFKLLASFAAGQMQAGHWVQEI 140
           RRNP A+LVCID+ PYAT+QA E DDILN+GGFSD VF+++A+FA G++ A HWV EI
Sbjct: 456 RRNPDAKLVCIDIQPYATTQAAERDDILNVGGFSDAVFEMVAAFAKGELDAEHWVGEI 513