BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1401.p         (186 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADI18847.1| uncharacterized conserved protein [uncultured bet...   212   3e-53
ref|ZP_04942282.1| hypothetical protein BCPG_03817 [Burkholderia...   187   7e-46
ref|YP_728717.1| RtcB protein [Ralstonia eutropha H16] >gi|11352...   187   7e-46
ref|YP_004680716.1| protein RtcB [Cupriavidus necator N-1] >gi|3...   187   7e-46
ref|YP_259411.2| RtcB family protein [Pseudomonas fluorescens Pf...   186   1e-45

>gb|ADI18847.1| uncharacterized conserved protein [uncultured beta proteobacterium
           HF0010_04H24]
          Length = 411

 Score =  212 bits (539), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 101/123 (82%), Positives = 108/123 (87%)

Query: 46  YDTLATGHGKPVKMWTRGVPVEAEAKTQLGNTAKMPFIYKHIAVMPDVHVGKGSTIGSVI 105
           Y+ L T   +PVKMWTRGVPVE  AK QL NTA +PFIYKHIAVMPDVH+GKGSTIGSVI
Sbjct: 6   YEVLHTEGSRPVKMWTRGVPVEEAAKKQLRNTATLPFIYKHIAVMPDVHLGKGSTIGSVI 65

Query: 106 PTLGAIIPAAVGVDIGCGMMAAKTTLCAADLPDNLGPLRSAIERAVPHGSSPRTRSHRGR 165
           PTLGA+IPAAVGVDIGCGMMAAKTTL A DLPDNLGPLRSAIERA+PHG SP+TR HRGR
Sbjct: 66  PTLGAVIPAAVGVDIGCGMMAAKTTLTANDLPDNLGPLRSAIERAIPHGMSPKTRGHRGR 125

Query: 166 SEG 168
            EG
Sbjct: 126 DEG 128


>ref|ZP_04942282.1| hypothetical protein BCPG_03817 [Burkholderia cenocepacia PC184]
 gb|EAY65453.1| hypothetical protein BCPG_03817 [Burkholderia cenocepacia PC184]
          Length = 422

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 96/141 (68%), Positives = 110/141 (78%), Gaps = 9/141 (6%)

Query: 20  CRASPSLMFSKKVTKMDKLDNIAPASYDTLATGHGKPVKMWTRGVPVEAEAKTQLGNTAK 79
           CRA P +   K++T MD         Y  +   +GKPVKMWT+GV VE EA+ QL NTA+
Sbjct: 4   CRAGPEMNQVKQMTDMD---------YQVMELANGKPVKMWTQGVAVEDEARAQLRNTAQ 54

Query: 80  MPFIYKHIAVMPDVHVGKGSTIGSVIPTLGAIIPAAVGVDIGCGMMAAKTTLCAADLPDN 139
           MPFI+ H+AVMPDVH+GKGSTIGSVIPT GAIIPAAVGVDIGCGMMAA+TTL AADLPD+
Sbjct: 55  MPFIFGHVAVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMMAARTTLTAADLPDS 114

Query: 140 LGPLRSAIERAVPHGSSPRTR 160
           LG LRSAIERAVPHG +P  R
Sbjct: 115 LGGLRSAIERAVPHGRAPGRR 135


>ref|YP_728717.1| RtcB protein [Ralstonia eutropha H16]
 emb|CAJ95352.1| RtcB Protein [Ralstonia eutropha H16]
          Length = 409

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 94/128 (73%), Positives = 106/128 (82%), Gaps = 3/128 (2%)

Query: 46  YDTLATGHGKPVKMWTRGVPVEAEAKTQLGNTAKMPFIYKHIAVMPDVHVGKGSTIGSVI 105
           YD L TG GKPVK+WTRGVPVE  A+ QL NTA+MPFI++H+AVMPDVH+GKGSTIGSVI
Sbjct: 7   YDVLDTGAGKPVKLWTRGVPVEGAAREQLLNTARMPFIFRHVAVMPDVHLGKGSTIGSVI 66

Query: 106 PTLGAIIPAAVGVDIGCGMMAAKTTLCAADLPDNLGPLRSAIERAVPHGSSPRTRSHRGR 165
           PT+GA+IPAAVGVDIGCGMMA KT+L AADLPDNLGPLRSAIE AVPHG   RT     R
Sbjct: 67  PTVGAVIPAAVGVDIGCGMMAVKTSLTAADLPDNLGPLRSAIEHAVPHG---RTAQGGRR 123

Query: 166 SEGFLGKS 173
            +G  G +
Sbjct: 124 DQGAWGSA 131


>ref|YP_004680716.1| protein RtcB [Cupriavidus necator N-1]
 gb|AEI79484.1| protein RtcB [Cupriavidus necator N-1]
          Length = 409

 Score =  187 bits (475), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 94/128 (73%), Positives = 107/128 (83%), Gaps = 3/128 (2%)

Query: 46  YDTLATGHGKPVKMWTRGVPVEAEAKTQLGNTAKMPFIYKHIAVMPDVHVGKGSTIGSVI 105
           YD L TG GKPVK+WTRGVPVE+ A+ QL NTA+MPFI++H+AVMPDVH+GKGSTIGSVI
Sbjct: 7   YDVLDTGAGKPVKLWTRGVPVESAAREQLLNTARMPFIFRHLAVMPDVHLGKGSTIGSVI 66

Query: 106 PTLGAIIPAAVGVDIGCGMMAAKTTLCAADLPDNLGPLRSAIERAVPHGSSPRTRSHRGR 165
           PT+GA+IPAAVGVDIGCGMMA KT+L AADLPDNLGPLRSAIE AVPHG   RT     R
Sbjct: 67  PTVGAVIPAAVGVDIGCGMMAVKTSLTAADLPDNLGPLRSAIEHAVPHG---RTAQGGRR 123

Query: 166 SEGFLGKS 173
            +G  G +
Sbjct: 124 DQGAWGSA 131


>ref|YP_259411.2| RtcB family protein [Pseudomonas fluorescens Pf-5]
 gb|AAY91577.2| RtcB family protein [Pseudomonas fluorescens Pf-5]
          Length = 408

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/127 (71%), Positives = 105/127 (82%), Gaps = 3/127 (2%)

Query: 45  SYDTLATGHGKPVKMWTRGVPVEAEAKTQLGNTAKMPFIYKHIAVMPDVHVGKGSTIGSV 104
           +Y  L   +GKP+KMWT+GVPVE EA+ QL NTAKMPFI+KH+AVMPDVH+GKGSTIGSV
Sbjct: 5   TYQLLEVANGKPIKMWTQGVPVENEARQQLMNTAKMPFIFKHLAVMPDVHLGKGSTIGSV 64

Query: 105 IPTLGAIIPAAVGVDIGCGMMAAKTTLCAADLPDNLGPLRSAIERAVPHGSSPRTRSHRG 164
           IPT+GAIIPAAVGVDIGCGM+AA+T+L A+DLPDNL  LRSAIE AVPHG   RT    G
Sbjct: 65  IPTVGAIIPAAVGVDIGCGMIAARTSLTASDLPDNLAGLRSAIEAAVPHG---RTSPRSG 121

Query: 165 RSEGFLG 171
           R +G  G
Sbjct: 122 RDKGAWG 128