BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1400.p (222 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ADI18847.1| uncharacterized conserved protein [uncultured bet... 400 e-110 ref|YP_300056.1| hypothetical protein Reut_B5869 [Ralstonia eutr... 380 e-103 ref|YP_728717.1| RtcB protein [Ralstonia eutropha H16] >gi|11352... 372 e-101 ref|YP_001796787.1| hypothetical protein RALTA_B0354 [Cupriavidu... 370 e-100 ref|YP_004491177.1| hypothetical protein DelCs14_5853 [Delftia s... 368 e-100 >gb|ADI18847.1| uncharacterized conserved protein [uncultured beta proteobacterium HF0010_04H24] Length = 411 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 191/222 (86%), Positives = 210/222 (94%) Query: 1 MLHSGSRGVGNAIGTHFIELAQQDMRKHMVNLPDRDLAYLKEGSTHYDDYLQAVGWAQKF 60 MLHSGSRGVGNAIGTHFIELA+QDMR H +NLPD+DLAYL EG+ HYDDY++AVGWAQ+F Sbjct: 190 MLHSGSRGVGNAIGTHFIELAKQDMRTHFINLPDQDLAYLAEGTQHYDDYVEAVGWAQRF 249 Query: 61 ARMNREVMMQNLIAAVRSVIAKPFQTHVEAVNCHHNYVQKEHHFGQDVLVTRKGAVSARA 120 AR NREVMMQNLIAAVR+VI KPFQTHVEAVNCHHNYVQKEHHFG+DVLVTRKGAVSARA Sbjct: 250 ARNNREVMMQNLIAAVRTVIHKPFQTHVEAVNCHHNYVQKEHHFGKDVLVTRKGAVSARA 309 Query: 121 GELGIIPGSMGARSFIVRGKGEAESFHSCSHGAGRTMSRTEAKKRFSVEDHIRATEGVEC 180 GELGIIPGSMGA+SFIVRGKG A+SFHSCSHGAGRTMSRTEAK+RF++ D IRATEGVEC Sbjct: 310 GELGIIPGSMGAKSFIVRGKGNADSFHSCSHGAGRTMSRTEAKRRFNLADQIRATEGVEC 369 Query: 181 RKDEAVIDEIPMAYKDIDAVMAAQQDLVEVVHTLRQIVCVKG 222 RKDE VIDEIPMAYKDIDAVM AQ++LV+VVH L+Q+VCVKG Sbjct: 370 RKDENVIDEIPMAYKDIDAVMLAQRELVDVVHILKQVVCVKG 411 >ref|YP_300056.1| hypothetical protein Reut_B5869 [Ralstonia eutropha JMP134] gb|AAZ65212.1| Protein of unknown function UPF0027 [Ralstonia eutropha JMP134] Length = 409 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 186/222 (83%), Positives = 199/222 (89%) Query: 1 MLHSGSRGVGNAIGTHFIELAQQDMRKHMVNLPDRDLAYLKEGSTHYDDYLQAVGWAQKF 60 MLHSGSRGVGNAIGT FI LAQQDMR+H+ NLPDRDLAYL EGS HYDDY+ AV WAQ+F Sbjct: 188 MLHSGSRGVGNAIGTTFIALAQQDMRRHLANLPDRDLAYLTEGSEHYDDYVFAVSWAQQF 247 Query: 61 ARMNREVMMQNLIAAVRSVIAKPFQTHVEAVNCHHNYVQKEHHFGQDVLVTRKGAVSARA 120 AR NRE+MM N++AA + VI KPF T EAVNCHHNYVQKE HFGQDVLVTRKGAVSARA Sbjct: 248 ARRNRELMMANVLAAAQRVIRKPFTTQAEAVNCHHNYVQKERHFGQDVLVTRKGAVSARA 307 Query: 121 GELGIIPGSMGARSFIVRGKGEAESFHSCSHGAGRTMSRTEAKKRFSVEDHIRATEGVEC 180 GELGIIPGSMGARSFIVRGKG ESF SCSHGAGRTMSRTEAK+RFSV D +RATEGVEC Sbjct: 308 GELGIIPGSMGARSFIVRGKGNPESFCSCSHGAGRTMSRTEAKRRFSVADQVRATEGVEC 367 Query: 181 RKDEAVIDEIPMAYKDIDAVMAAQQDLVEVVHTLRQIVCVKG 222 RKD AVIDEIPMAYKDI+AVMAAQ DLVE+VHTLRQ+VCVKG Sbjct: 368 RKDAAVIDEIPMAYKDIEAVMAAQSDLVEIVHTLRQLVCVKG 409 >ref|YP_728717.1| RtcB protein [Ralstonia eutropha H16] emb|CAJ95352.1| RtcB Protein [Ralstonia eutropha H16] Length = 409 Score = 372 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 181/222 (81%), Positives = 198/222 (89%) Query: 1 MLHSGSRGVGNAIGTHFIELAQQDMRKHMVNLPDRDLAYLKEGSTHYDDYLQAVGWAQKF 60 MLHSGSRGVGNAIGT FI LAQQDMRKH+ NLPDRDLAYL EGSTHY+DY+ AV WAQ + Sbjct: 188 MLHSGSRGVGNAIGTTFISLAQQDMRKHLANLPDRDLAYLVEGSTHYEDYIFAVSWAQAY 247 Query: 61 ARMNREVMMQNLIAAVRSVIAKPFQTHVEAVNCHHNYVQKEHHFGQDVLVTRKGAVSARA 120 AR NRE+MM+ ++AA + V+ KPFQ +EAVNCHHNYVQKEHHFG DVLVTRKGAVSAR Sbjct: 248 ARRNRELMMEAVLAAAQRVLRKPFQAQLEAVNCHHNYVQKEHHFGADVLVTRKGAVSARV 307 Query: 121 GELGIIPGSMGARSFIVRGKGEAESFHSCSHGAGRTMSRTEAKKRFSVEDHIRATEGVEC 180 GELGIIPGSMGARSFIVRGKG ESF SCSHGAGRTMSR+EAK+RF+V D + ATEGVEC Sbjct: 308 GELGIIPGSMGARSFIVRGKGNPESFCSCSHGAGRTMSRSEAKRRFTVADQVHATEGVEC 367 Query: 181 RKDEAVIDEIPMAYKDIDAVMAAQQDLVEVVHTLRQIVCVKG 222 RKD AVIDEIPMAYKDIDAVMAAQ DLVE+VHTLRQ+VCVKG Sbjct: 368 RKDAAVIDEIPMAYKDIDAVMAAQADLVEIVHTLRQVVCVKG 409 >ref|YP_001796787.1| hypothetical protein RALTA_B0354 [Cupriavidus taiwanensis LMG 19424] emb|CAP63550.1| conserved hypothetical protein; UPF0027; similar to E.coli rtcB [Cupriavidus taiwanensis LMG 19424] Length = 416 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 182/222 (81%), Positives = 199/222 (89%) Query: 1 MLHSGSRGVGNAIGTHFIELAQQDMRKHMVNLPDRDLAYLKEGSTHYDDYLQAVGWAQKF 60 MLHSGSRGVGNAIGT FI LAQQDMR+H+ NLPDRDLAYL EGSTHY+DY+ AV WAQ + Sbjct: 195 MLHSGSRGVGNAIGTTFITLAQQDMRQHLANLPDRDLAYLVEGSTHYEDYIFAVSWAQAY 254 Query: 61 ARMNREVMMQNLIAAVRSVIAKPFQTHVEAVNCHHNYVQKEHHFGQDVLVTRKGAVSARA 120 AR NRE+MM+ ++AA + V+ KPFQ +EAVNCHHNYVQKEHHFG DVLVTRKGAVSARA Sbjct: 255 ARRNRELMMEAVLAAAQRVLRKPFQAQLEAVNCHHNYVQKEHHFGADVLVTRKGAVSARA 314 Query: 121 GELGIIPGSMGARSFIVRGKGEAESFHSCSHGAGRTMSRTEAKKRFSVEDHIRATEGVEC 180 GELGIIPGSMGARSFIVRGKG ESF SCSHGAGRTMSR+EAK+RF+V D +ATEGVEC Sbjct: 315 GELGIIPGSMGARSFIVRGKGNPESFCSCSHGAGRTMSRSEAKRRFTVADQKQATEGVEC 374 Query: 181 RKDEAVIDEIPMAYKDIDAVMAAQQDLVEVVHTLRQIVCVKG 222 RKD AVIDEIPMAYKDIDAVMAAQ DLVEVVHTLRQ+VCVKG Sbjct: 375 RKDAAVIDEIPMAYKDIDAVMAAQADLVEVVHTLRQVVCVKG 416 >ref|YP_004491177.1| hypothetical protein DelCs14_5853 [Delftia sp. Cs1-4] gb|AEF92822.1| protein of unknown function UPF0027 [Delftia sp. Cs1-4] Length = 412 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 177/222 (79%), Positives = 196/222 (88%) Query: 1 MLHSGSRGVGNAIGTHFIELAQQDMRKHMVNLPDRDLAYLKEGSTHYDDYLQAVGWAQKF 60 MLHSGSRGVGNAIGTHFIELA++D H NLPD+DLAY +EG+ ++ DY++ V WAQKF Sbjct: 191 MLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYFEEGARYFGDYVRGVSWAQKF 250 Query: 61 ARMNREVMMQNLIAAVRSVIAKPFQTHVEAVNCHHNYVQKEHHFGQDVLVTRKGAVSARA 120 A NREVMM NLIA VR VIAKPF++HVEAVNCHHNYVQ+E HFGQDV +TRKGAVSAR Sbjct: 251 AMRNREVMMANLIATVRKVIAKPFESHVEAVNCHHNYVQQERHFGQDVFITRKGAVSARR 310 Query: 121 GELGIIPGSMGARSFIVRGKGEAESFHSCSHGAGRTMSRTEAKKRFSVEDHIRATEGVEC 180 GELGIIPGSMGARS+IVRG G ESF SCSHGAGR MSRT+AKK FSVEDHI+ATEGVEC Sbjct: 311 GELGIIPGSMGARSYIVRGLGNPESFESCSHGAGRVMSRTKAKKMFSVEDHIKATEGVEC 370 Query: 181 RKDEAVIDEIPMAYKDIDAVMAAQQDLVEVVHTLRQIVCVKG 222 RKD V+DEIPMAYKDIDAVMAAQQDLVEVVHTL+Q+VCVKG Sbjct: 371 RKDANVVDEIPMAYKDIDAVMAAQQDLVEVVHTLKQVVCVKG 412