BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1398.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003166999.1| RNA 3'-terminal-phosphate cyclase [Candidatu... 182 3e-44 ref|YP_259415.2| RNA 3'-terminal-phosphate cyclase [Pseudomonas ... 178 6e-43 ref|YP_004475785.1| RNA 3'-phosphate cyclase [Pseudomonas fulva ... 176 2e-42 dbj|BAK87885.1| RNA 3'-terminal-phosphate cyclase [Pseudomonas a... 170 2e-40 ref|ZP_04937844.1| RNA 3'-terminal phosphate cyclase [Pseudomona... 169 2e-40 >ref|YP_003166999.1| RNA 3'-terminal-phosphate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV35070.1| RNA 3'-phosphate cyclase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 357 Score = 182 bits (463), Expect = 3e-44, Method: Composition-based stats. Identities = 114/222 (51%), Positives = 143/222 (64%), Gaps = 4/222 (1%) Query: 11 IEVSGGTHNPLAPSADFLQHCFLPLLRRMGAAVTLELLRHGFHPAGGGQVRLQVEAGHVL 70 + VSGGTHNP AP ADFL +LPLLRRMG +ELLRHGF+PAGGGQVR +V G L Sbjct: 117 VTVSGGTHNPAAPPADFLIRAWLPLLRRMGVQTKIELLRHGFYPAGGGQVRAEVAPGKPL 176 Query: 71 GGLVLEERGALLQTRARALVANLPSAIGKRELQVLGEAVEGLQDR-KVIPLSDCDGPGNL 129 G L L ERGA TRA A+VA +P + +REL L + LQ +V+P + GPGN Sbjct: 177 G-LTLLERGAWQGTRATAIVAGVPHDVARRELTQLARRIPQLQGECRVLPHQE--GPGNA 233 Query: 130 VELHVTHAHVDELFCGHGAKSRPAEQVALDALGPMQRYLQSNAAVGEHLADQLMLPLALA 189 + + + HA V E+F G GA+ AE VA ++ YL S VGEHLADQL+LPLALA Sbjct: 234 LLVDLEHAAVHEVFTGFGARGVSAEHVADRVAKAVRGYLDSPGGVGEHLADQLVLPLALA 293 Query: 190 GTGRFTTTQLSPHMASNAEVIEAFLPVRFVFSPAQGALRVEV 231 G+G F+T + S H+ +N VI AFLPV S + G RV++ Sbjct: 294 GSGSFSTGKPSSHLLTNLAVIGAFLPVAMHVSESGGCWRVDI 335 >ref|YP_259415.2| RNA 3'-terminal-phosphate cyclase [Pseudomonas fluorescens Pf-5] sp|Q4KEB8|RTCA_PSEF5 RecName: Full=RNA 3'-terminal phosphate cyclase; Short=RNA cyclase; Short=RNA-3'-phosphate cyclase gb|AAY91581.2| RNA 3'-phosphate cyclase [Pseudomonas fluorescens Pf-5] Length = 342 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 108/213 (50%), Positives = 141/213 (66%), Gaps = 2/213 (0%) Query: 11 IEVSGGTHNPLAPSADFLQHCFLPLLRRMGAAVTLELLRHGFHPAGGGQVRLQVEAGHVL 70 + +SGGTHNPLAP DFLQ +LP LRRMG V L+LLRHGF PAGGG++ ++ L Sbjct: 117 VSISGGTHNPLAPPVDFLQQAWLPQLRRMGGRVELQLLRHGFVPAGGGELEAFIQPSE-L 175 Query: 71 GGLVLEERGALLQTRARALVANLPSAIGKRELQVLGEAVEGLQDRKVIPLSDCD-GPGNL 129 L L+ERGALL +RA AL A LP + +REL+ + + ++ +++ L D + GPGN+ Sbjct: 176 QPLHLQERGALLGSRAWALSAGLPEHVAERELRRVHDRLQLPREQLTPVLLDEEYGPGNV 235 Query: 130 VELHVTHAHVDELFCGHGAKSRPAEQVALDALGPMQRYLQSNAAVGEHLADQLMLPLALA 189 + L H+ ELFCG G S AE+VA A+ + +L S AAV EHLADQL+LP+ALA Sbjct: 236 LLLEFAFEHLTELFCGFGQNSLRAEKVADGAIDQARDWLDSGAAVAEHLADQLLLPMALA 295 Query: 190 GTGRFTTTQLSPHMASNAEVIEAFLPVRFVFSP 222 G G FTT ++ H+ SN VIEAFLPVR P Sbjct: 296 GGGSFTTPCMTEHLQSNIRVIEAFLPVRIEARP 328 >ref|YP_004475785.1| RNA 3'-phosphate cyclase [Pseudomonas fulva 12-X] gb|AEF23691.1| RNA 3'-phosphate cyclase [Pseudomonas fulva 12-X] Length = 341 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 107/222 (48%), Positives = 140/222 (63%), Gaps = 2/222 (0%) Query: 11 IEVSGGTHNPLAPSADFLQHCFLPLLRRMGAAVTLELLRHGFHPAGGGQVRLQVEAGHVL 70 +++SGGTHNP AP DFL +LPLLRRMG V L+L RHGF PAGGG + ++ L Sbjct: 117 VQISGGTHNPAAPPFDFLDQAWLPLLRRMGGRVELQLHRHGFVPAGGGALEAFIQPSS-L 175 Query: 71 GGLVLEERGALLQTRARALVANLPSAIGKRELQVLGEAVEGLQ-DRKVIPLSDCDGPGNL 129 L L ERGA+++ RA L+A +P +G+REL +G+ ++ + L GPGN+ Sbjct: 176 TPLHLCERGAVIEQRADVLLAGIPGHVGERELARVGKRLQWPDANLHCTWLDQRHGPGNI 235 Query: 130 VELHVTHAHVDELFCGHGAKSRPAEQVALDALGPMQRYLQSNAAVGEHLADQLMLPLALA 189 + L V + E FC G AE VA A+ P++++L S AAV EHLADQL+LP+ALA Sbjct: 236 LMLTVACEQLTEQFCAFGQNGVRAEAVADRAIEPLRQWLTSGAAVAEHLADQLLLPMALA 295 Query: 190 GTGRFTTTQLSPHMASNAEVIEAFLPVRFVFSPAQGALRVEV 231 G+G FTTT LS H+ SN +VIEAF PV ALRVEV Sbjct: 296 GSGSFTTTHLSEHLQSNIQVIEAFCPVTVRCRSVGKALRVEV 337 >dbj|BAK87885.1| RNA 3'-terminal-phosphate cyclase [Pseudomonas aeruginosa NCGM2.S1] Length = 341 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 108/221 (48%), Positives = 143/221 (64%), Gaps = 10/221 (4%) Query: 2 LAAPAGRFCIEVSGGTHNPLAPSADFLQHCFLPLLRRMGAAVTLELLRHGFHPAGGGQVR 61 L A G + +SGGTHNPLAP ADFL+ +LPLLRRMGA V LELLRHGF PAGGG++ Sbjct: 108 LLAANGESRVRISGGTHNPLAPPADFLRDSWLPLLRRMGAEVDLELLRHGFVPAGGGELL 167 Query: 62 LQVEAGHVLGGLVLEERGALLQTRARALVANLPSAIGKRELQVLGEAVE-GLQDRKVIPL 120 +V L LE GA L+ +ARAL+A +P +G+REL+ + + + ++R++ L Sbjct: 168 ARVRPAR-WRPLQLEHPGAALRRQARALLAGIPGHVGERELERVRQRLGWSDEERQLEFL 226 Query: 121 SDCDGPGNLVELHVTHAHVDELFCGHG----AKSRPAEQVALDALGPMQRYLQSNAAVGE 176 ++ GPGN + L + H+ FC G + R AEQVA A+G +++S A E Sbjct: 227 AEDQGPGNALLLRIDCEHICATFCAFGQAGVSAERVAEQVATQAIG----WMESGCAADE 282 Query: 177 HLADQLMLPLALAGTGRFTTTQLSPHMASNAEVIEAFLPVR 217 HLADQL+LP+ALAG G FTT +LS H+ SN VIE FLPVR Sbjct: 283 HLADQLLLPMALAGAGSFTTPRLSAHLQSNRRVIERFLPVR 323 >ref|ZP_04937844.1| RNA 3'-terminal phosphate cyclase [Pseudomonas aeruginosa 2192] ref|ZP_06880874.1| RNA 3'-terminal-phosphate cyclase [Pseudomonas aeruginosa PAb1] gb|EAZ61963.1| RNA 3'-terminal phosphate cyclase [Pseudomonas aeruginosa 2192] gb|EGM15527.1| RNA 3'-terminal-phosphate cyclase [Pseudomonas aeruginosa 152504] Length = 341 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 107/221 (48%), Positives = 143/221 (64%), Gaps = 10/221 (4%) Query: 2 LAAPAGRFCIEVSGGTHNPLAPSADFLQHCFLPLLRRMGAAVTLELLRHGFHPAGGGQVR 61 L A G + +SGGTHNPLAP ADFL+ +LPLLRRMGA V LELLRHGF PAGGG++ Sbjct: 108 LLAANGESRVRISGGTHNPLAPPADFLRDSWLPLLRRMGAEVDLELLRHGFVPAGGGELL 167 Query: 62 LQVEAGHVLGGLVLEERGALLQTRARALVANLPSAIGKRELQVLGEAVE-GLQDRKVIPL 120 +V L LE GA L+ +ARAL+A +P +G+REL+ + + + ++R++ L Sbjct: 168 ARVRPAR-WRPLQLEHPGAALRRQARALLAGIPGHVGERELERVRQRLGWSDEERQLEFL 226 Query: 121 SDCDGPGNLVELHVTHAHVDELFCGHG----AKSRPAEQVALDALGPMQRYLQSNAAVGE 176 ++ GPGN + L + H+ FC G + R AEQVA A+G +++S A E Sbjct: 227 AEDQGPGNALLLRIDCEHICATFCAFGQAGVSAERVAEQVATQAIG----WMESGCAADE 282 Query: 177 HLADQLMLPLALAGTGRFTTTQLSPHMASNAEVIEAFLPVR 217 HLADQL+LP+ALAG G FTT +LS H+ SN +IE FLPVR Sbjct: 283 HLADQLLLPMALAGAGSFTTPRLSAHLQSNRRIIERFLPVR 323