BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1397.p (686 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herba... 682 0.0 ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthin... 405 e-110 ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthin... 389 e-106 ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbasp... 370 e-100 ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthin... 370 e-100 >ref|YP_003773468.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] gb|ADJ61560.1| methyl-accepting chemotaxis protein I protein [Herbaspirillum seropedicae SmR1] Length = 534 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 437/473 (92%), Positives = 454/473 (95%) Query: 37 MKLSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVD 96 M+LSNVTIR RLWLGFGLLM+LMLAMAASGIARLGQLN QMKDVIHDKYPKTVVAGDIVD Sbjct: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNAQMKDVIHDKYPKTVVAGDIVD 60 Query: 97 QLNLIARSVRNILLLKREPQIKSEYDRITGADRAIREDLAQLEKLLTDDDSRSALKKLVT 156 QLNLIARSVRNILLLKREPQIKSEY+RI+GADRAIREDLAQL+KLLTD DSR+AL LVT Sbjct: 61 QLNLIARSVRNILLLKREPQIKSEYERISGADRAIREDLAQLDKLLTDGDSRAALTTLVT 120 Query: 157 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMMKSAGDE 216 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATM+AADALI+QQH+MMK+AGDE Sbjct: 121 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMNAADALIRQQHEMMKTAGDE 180 Query: 217 VESNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTSTIDDS 276 VESNY QARTLLL+L A GLAAAA IA MITRSITAPLDRAVRVAETVAAGDLTS ID Sbjct: 181 VESNYAQARTLLLLLAAAGLAAAAVIAWMITRSITAPLDRAVRVAETVAAGDLTSAIDAH 240 Query: 277 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE 336 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE Sbjct: 241 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE 300 Query: 337 TASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVDTMGAIDASSKKIVDI 396 TASSMEQLTATVKQNASHAGQA+QLAGSASDIARQGGEVV VV+TMGAIDASSKKIVDI Sbjct: 301 TASSMEQLTATVKQNASHAGQASQLAGSASDIARQGGEVVGHVVETMGAIDASSKKIVDI 360 Query: 397 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAHEIKGLIADS 456 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRALAQRSATAAHEIK LIADS Sbjct: 361 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAHEIKALIADS 420 Query: 457 VARVGNGSRLVEQAGRTMQDVVQSVQRVGAVVTEISAAGQEQSAGIEQVNLAI 509 VARVGNGS+LVEQAGRTM +VVQSVQRVG VV EIS+AGQEQSAGIEQVNLAI Sbjct: 421 VARVGNGSKLVEQAGRTMHEVVQSVQRVGEVVNEISSAGQEQSAGIEQVNLAI 473 >ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89882.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 252/471 (53%), Positives = 340/471 (72%) Query: 39 LSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVDQL 98 + N+ I RL L FG ++IL++ +A R+G LN + +V D+YPKTV+A + D L Sbjct: 1 MKNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDL 60 Query: 99 NLIARSVRNILLLKREPQIKSEYDRITGADRAIREDLAQLEKLLTDDDSRSALKKLVTAQ 158 N IAR++RN LL+ + I++E +I A ++ L +LEK + + R + L + Sbjct: 61 NQIARNMRNALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADR 120 Query: 159 NAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMMKSAGDEVE 218 + + +D + + G K+ A+ +L EVRP Q + +++ D LI Q+++MK +G E Sbjct: 121 SKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEAN 180 Query: 219 SNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTSTIDDSGR 278 + Q + L+ + + + + AA A++ TRSIT PL +AV +A VA GDLT +I + Sbjct: 181 AKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESK 240 Query: 279 DETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEETA 338 DET LL+ALK MN+ LL IV+QVR+ TDTIA+AS +IA GNLDLSSRTE+QA+SLEETA Sbjct: 241 DETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETA 300 Query: 339 SSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVDTMGAIDASSKKIVDIIG 398 SSME+LT+TVKQNA +A Q+NQLA SAS++A +GG VVS+VVDTMG I+ S+KKIVDIIG Sbjct: 301 SSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIG 360 Query: 399 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAHEIKGLIADSVA 458 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AA EIK LI DSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVD 420 Query: 459 RVGNGSRLVEQAGRTMQDVVQSVQRVGAVVTEISAAGQEQSAGIEQVNLAI 509 +V GSRLV+ AG TM++VV+SV+RV +++EI+AA QEQ+ GIEQ+N A+ Sbjct: 421 KVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAV 471 >ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89943.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 255/471 (54%), Positives = 335/471 (71%) Query: 39 LSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVDQL 98 + N+ I RL L FG ++ +++ +A RL +L+ + V +D+YPKTV A I D L Sbjct: 1 MKNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTL 60 Query: 99 NLIARSVRNILLLKREPQIKSEYDRITGADRAIREDLAQLEKLLTDDDSRSALKKLVTAQ 158 N AR++RN LL+ QIK E D I I E L +L++ + + R+ +K L A+ Sbjct: 61 NETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDAR 120 Query: 159 NAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMMKSAGDEVE 218 + +DK +A+V QG + A +L EVRP Q M D L++ Q ++M AG++ Sbjct: 121 GRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAH 180 Query: 219 SNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTSTIDDSGR 278 A+ L+ +L+ + + +A + + TRSIT PL +AV +A VA GDLT TI + + Sbjct: 181 EVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSK 240 Query: 279 DETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEETA 338 DET LL+AL+ MN+ L+ IV+QVR+ TDTIATASS+IA GNLDLSSRTEEQA+SLEETA Sbjct: 241 DETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETA 300 Query: 339 SSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVDTMGAIDASSKKIVDIIG 398 SSME+LT+TVKQNA +A Q+NQLA +AS++A +GG VVSQVV+TMG+I+ S+ KIVDIIG Sbjct: 301 SSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIG 360 Query: 399 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAHEIKGLIADSVA 458 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AA EIK LI DSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVE 420 Query: 459 RVGNGSRLVEQAGRTMQDVVQSVQRVGAVVTEISAAGQEQSAGIEQVNLAI 509 +V NGSRLV AG TM +VV+SV+RV ++ EI+AA QEQ+ GIEQ+N A+ Sbjct: 421 KVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAV 471 >ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] gb|ADJ64914.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 237/473 (50%), Positives = 321/473 (67%) Query: 37 MKLSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVD 96 M+ +N++I RL + F +L++++ + A G+ARL +N + V++D+Y K + I Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 97 QLNLIARSVRNILLLKREPQIKSEYDRITGADRAIREDLAQLEKLLTDDDSRSALKKLVT 156 +++ +A S+RN LL+ QI +E I + +L +L+ + ++++ L K+ Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRLVANPEAKAKLDKVTE 120 Query: 157 AQNAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMMKSAGDE 216 + +Y R ++ + G K+ AI +++ E+ P+Q S D L Q +M + D+ Sbjct: 121 TRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQ 180 Query: 217 VESNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTSTIDDS 276 E+ Y R ++++ L AA IA I+RSIT PL RAV VAETVAAGDLT+ I Sbjct: 181 AEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAH 240 Query: 277 GRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEE 336 DET LL+AL MN +L IV +VR TD++ TAS++IA GNLDLSSRTEEQA++LEE Sbjct: 241 SNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEE 300 Query: 337 TASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVDTMGAIDASSKKIVDI 396 TASS+E+LT++VKQNA H ++++LA +AS +A QGG V QVV TMGAI+ SS KIVDI Sbjct: 301 TASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVDI 360 Query: 397 IGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAHEIKGLIADS 456 I VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSATAA EIK LI DS Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDS 420 Query: 457 VARVGNGSRLVEQAGRTMQDVVQSVQRVGAVVTEISAAGQEQSAGIEQVNLAI 509 V +V +G+ LV QAG TM VV S+++V +V EISAA +EQS GIEQVN AI Sbjct: 421 VNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAI 473 >ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] gb|ABR89954.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 240/471 (50%), Positives = 312/471 (66%) Query: 39 LSNVTIRARLWLGFGLLMILMLAMAASGIARLGQLNGQMKDVIHDKYPKTVVAGDIVDQL 98 ++N+ IR +L L FG++ L++ + +LGQLN +K + D+YPKT++A + ++ Sbjct: 4 IANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEV 63 Query: 99 NLIARSVRNILLLKREPQIKSEYDRITGADRAIREDLAQLEKLLTDDDSRSALKKLVTAQ 158 N IA ++R+I+L +IK +D+ + E L QL + ++ + + A+ Sbjct: 64 NKIALNLRDIMLSSDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAIVAR 123 Query: 159 NAYFEKRDKVLAMVQQGGKEGAIDMLIDEVRPVQSATMSAADALIKQQHDMMKSAGDEVE 218 + Y RD +L + Q G A L PVQ A DA+ Q +M AGD Sbjct: 124 DQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDAAS 183 Query: 219 SNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTSTIDDSGR 278 + VQART++ +L + L + + +TRSIT PL+ AV VA VA GDL+ + Sbjct: 184 ATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPVFVKTT 243 Query: 279 DETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEETA 338 +E L+ ALK MND L IV+QVR T TIA AS EIARGN+DLSSRTE+QA+SLEETA Sbjct: 244 NEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEETA 303 Query: 339 SSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVDTMGAIDASSKKIVDIIG 398 S+ME+LT+TV++NA +A QANQLA SA+ +ARQGG VV +V+ TM AI+ SSKKI DI G Sbjct: 304 SAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADITG 363 Query: 399 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSATAAHEIKGLIADSVA 458 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSATAA EIK LI DSVA Sbjct: 364 VIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDSVA 423 Query: 459 RVGNGSRLVEQAGRTMQDVVQSVQRVGAVVTEISAAGQEQSAGIEQVNLAI 509 +V NGS+LV+QAG T+ +VV SV + +V IS A QEQSAGIEQV AI Sbjct: 424 KVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAI 474