BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1393.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775463.1| flagellar protein [Herbaspirillum seropedica...   201   2e-50
ref|ZP_08272772.1| Flagellar protein fliJ [Oxalobacteraceae bact...   150   6e-35
ref|YP_001100155.1| flagellar fliJ protein [Herminiimonas arseni...   144   6e-33
ref|YP_001353127.1| flagellar biosynthesis chaperone [Janthinoba...   138   3e-31
ref|YP_315362.1| flagellar protein FliJ [Thiobacillus denitrific...   125   2e-27

>ref|YP_003775463.1| flagellar protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63555.1| flagellar protein [Herbaspirillum seropedicae SmR1]
          Length = 146

 Score =  201 bits (512), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 132/146 (90%), Positives = 143/146 (97%)

Query: 1   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 60
           MATPSALDTLIELATKETDEATKRLGRA+RVSEEAQQKLGILQQYRDDYAARFQETL+NG
Sbjct: 1   MATPSALDTLIELATKETDEATKRLGRAVRVSEEAQQKLGILQQYRDDYAARFQETLSNG 60

Query: 61  LTALAYRNFQLFLEKIDNAIDGQVNVVQSSQQRVAEARTAWQACERKRMSYDTLATRARD 120
           LTAL+YRNFQLF+EKIDNAI GQ +VV+SSQQRVAEAR AWQACERKRMSYDTLATRARD
Sbjct: 61  LTALSYRNFQLFIEKIDNAIAGQEDVVRSSQQRVAEARAAWQACERKRMSYDTLATRARD 120

Query: 121 QEMRKENKRDQKSMDEHAARISFYKR 146
           +EM+K+NKRDQKSMDEHA+RI+FYKR
Sbjct: 121 KEMQKQNKRDQKSMDEHASRITFYKR 146


>ref|ZP_08272772.1| Flagellar protein fliJ [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33771.1| Flagellar protein fliJ [Oxalobacteraceae bacterium IMCC9480]
          Length = 146

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 92/146 (63%), Positives = 112/146 (76%)

Query: 1   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 60
           MATPSA+DTLIELA K+TDEA KRLG  IR  EE +QK+ +L QYRDDYA RFQ +L+ G
Sbjct: 1   MATPSAIDTLIELAVKDTDEAAKRLGLTIRACEEVEQKMALLVQYRDDYADRFQHSLSVG 60

Query: 61  LTALAYRNFQLFLEKIDNAIDGQVNVVQSSQQRVAEARTAWQACERKRMSYDTLATRARD 120
           L+   YRNFQLF++K+D AI  Q  V+  +++R+ EARTAWQ+ ERKRMSY TLA+RA  
Sbjct: 61  LSPSGYRNFQLFIDKLDGAIASQQLVLLDAKRRIEEARTAWQSSERKRMSYGTLASRALK 120

Query: 121 QEMRKENKRDQKSMDEHAARISFYKR 146
              +KE KRDQK+MDEHAAR   YKR
Sbjct: 121 VAQQKEAKRDQKAMDEHAARALLYKR 146


>ref|YP_001100155.1| flagellar fliJ protein [Herminiimonas arsenicoxydans]
 gb|AAV68360.1| FliJ [Herminiimonas arsenicoxydans]
 emb|CAL62031.1| flagellar FliJ protein [Herminiimonas arsenicoxydans]
          Length = 146

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 92/146 (63%), Positives = 110/146 (75%)

Query: 1   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 60
           MAT SALDTLIELA+KE+DEA KRLG  ++ +E+++QKL +L QYRDDYA RFQ+ L NG
Sbjct: 1   MATSSALDTLIELASKESDEAAKRLGHCMKAAEDSEQKLALLMQYRDDYATRFQQNLANG 60

Query: 61  LTALAYRNFQLFLEKIDNAIDGQVNVVQSSQQRVAEARTAWQACERKRMSYDTLATRARD 120
           LTA+ YRNFQLFL+K++NAI  Q  VV+ +   V + R+AWQA ERKRMSY TLA RA  
Sbjct: 61  LTAMGYRNFQLFLDKLENAISSQQLVVRDAHIHVEQERSAWQASERKRMSYGTLANRALK 120

Query: 121 QEMRKENKRDQKSMDEHAARISFYKR 146
                ENKRDQK  DEHAAR   YKR
Sbjct: 121 ARQLAENKRDQKQTDEHAARQFLYKR 146


>ref|YP_001353127.1| flagellar biosynthesis chaperone [Janthinobacterium sp. Marseille]
 gb|ABR88322.1| Flagellar biosynthesis chaperone [Janthinobacterium sp. Marseille]
          Length = 146

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 91/146 (62%), Positives = 112/146 (76%)

Query: 1   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 60
           MAT +ALDTLIELATKETDEA KRLG+ ++ +EE +QKL +L+QYRDDYAARFQ+ L+ G
Sbjct: 1   MATSTALDTLIELATKETDEAAKRLGKCMKTAEECEQKLALLEQYRDDYAARFQQNLSTG 60

Query: 61  LTALAYRNFQLFLEKIDNAIDGQVNVVQSSQQRVAEARTAWQACERKRMSYDTLATRARD 120
           L+AL Y+N+Q FL K++ AI  Q +VV+ +  RV   R+AWQA ERKRMSY TLA RA  
Sbjct: 61  LSALGYQNYQQFLGKLEQAISSQQSVVRDAHMRVERERSAWQASERKRMSYGTLANRALK 120

Query: 121 QEMRKENKRDQKSMDEHAARISFYKR 146
            +  +ENKRDQK  DEHAAR   YKR
Sbjct: 121 AKQLQENKRDQKQTDEHAARALLYKR 146


>ref|YP_315362.1| flagellar protein FliJ [Thiobacillus denitrificans ATCC 25259]
 gb|AAZ97557.1| flagellar protein FliJ [Thiobacillus denitrificans ATCC 25259]
          Length = 149

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/146 (58%), Positives = 106/146 (72%)

Query: 1   MATPSALDTLIELATKETDEATKRLGRAIRVSEEAQQKLGILQQYRDDYAARFQETLTNG 60
           MA PSALDTLI+LA KETDEA KRL  A+R  EEA +KL +L QYRDDY+ R Q  L  G
Sbjct: 1   MAAPSALDTLIDLAIKETDEAAKRLAAALRAGEEASEKLALLTQYRDDYSMRCQADLAGG 60

Query: 61  LTALAYRNFQLFLEKIDNAIDGQVNVVQSSQQRVAEARTAWQACERKRMSYDTLATRARD 120
           L+     N+Q+F++K+D AI GQ  VV + Q ++A ARTAWQACE+K+MS+ TLA RA+ 
Sbjct: 61  LSTTQLHNYQVFMQKLDYAISGQQKVVDAVQAQIAAARTAWQACEQKKMSFVTLAGRAKK 120

Query: 121 QEMRKENKRDQKSMDEHAARISFYKR 146
           +E R+E  RDQK  DEHAAR +  KR
Sbjct: 121 EETRRELWRDQKQNDEHAARRALVKR 146