BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1392.p (527 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775462.1| flagellar hook-length control protein [Herba... 318 1e-84 ref|YP_001353126.1| flagellar hook-length control protein [Janth... 112 2e-22 ref|YP_001100156.1| flagellar hook-length control protein [Hermi... 97 6e-18 ref|ZP_03588743.1| flagellar hook-length control protein [Burkho... 79 2e-12 ref|YP_001120980.1| flagellar hook-length control protein [Burkh... 75 2e-11 >ref|YP_003775462.1| flagellar hook-length control protein [Herbaspirillum seropedicae SmR1] gb|ADJ63554.1| flagellar hook-length control protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 318 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 291/447 (65%), Positives = 327/447 (73%), Gaps = 18/447 (4%) Query: 83 MNTSLPLLNVITGSQAATGSRSGNPADSFSADVPFNQVLNSQVSTRVQDNQAQARQAQQN 142 MNTSLPLLNVITGSQAATG+RS NPADSFSADVPFNQVLNSQVSTR Q N +Q Sbjct: 1 MNTSLPLLNVITGSQAATGARSANPADSFSADVPFNQVLNSQVSTRNQQNPSQ------- 53 Query: 143 ADTQAANAQAAAKQAATNQQSQTAANNASKSAANDGSDQSSQVSDKDEDEDSSDTATQAS 202 + AA++ SQ + +S A+ + Q S KDED+DS DTATQAS Sbjct: 54 ------DKPQAAQEQQPAAPSQPTQSASSAKASAANGSEQKQDSAKDEDKDSDDTATQAS 107 Query: 203 AELLALVANIAQNAVKPAADGKAKGDGSAADLLAQAKRGSGKLSLSDQQQALADD-KQGK 261 AELLALVANIAQNAVKP DGK+ + + ADLLAQAKRG LSL+D+QQALA D K GK Sbjct: 108 AELLALVANIAQNAVKPVTDGKS--EHTDADLLAQAKRGGASLSLADEQQALAGDGKDGK 165 Query: 262 VDPAALQDALAAAKGKQDAAASELARKSNAEANPAPQASNAKDAKPAIDLGA-AAKAEPK 320 +D A LQ +LAA KGKQD AA++LARK+NA A AK KPA+DLG+ A+A K Sbjct: 166 IDLAGLQSSLAANKGKQDGAAADLARKANAAEANPTDAHAAKGEKPAVDLGSEKAQALSK 225 Query: 321 DDASALTARAQLNKATPELAAPAARQDAAPAAPTPVVLPAMQQAAVASQPQAVFAPAYSD 380 +DAS L RAQ KAT E A A+Q+ A PTPVV+PAMQQA A+Q QAVF Y+D Sbjct: 226 EDASTLANRAQYGKATTETVA-TAKQELPQATPTPVVMPAMQQALAANQTQAVFGTTYTD 284 Query: 381 KIQSNVGSAGWNQALGTKITWMATAGMQSASLSLNPPDLGPMQVVLNVHNQQADATFITA 440 KIQ NVGSAGW+QA+G KITWMAT G+QSASL+LNPPDLGPMQVVLNVHNQQADATFITA Sbjct: 285 KIQPNVGSAGWDQAVGNKITWMATGGIQSASLTLNPPDLGPMQVVLNVHNQQADATFITA 344 Query: 441 QPEVKQALEAAMPKLREMMDQAGIQLGQANVQTGMPNQQQGAGNGQQQARSGSSGSFGKE 500 QPEVKQALEAAMPKLREMMDQAGIQLGQA V TGMPNQQQGA GQQQARS S + Sbjct: 345 QPEVKQALEAAMPKLREMMDQAGIQLGQATVNTGMPNQQQGANGGQQQARSSSGAGGAGQ 404 Query: 501 QEADVAVNGTATATATTSGLGLVDTFA 527 ++ A TTSGLGLVDTFA Sbjct: 405 EQDGEIAITGAATATTTSGLGLVDTFA 431 >ref|YP_001353126.1| flagellar hook-length control protein [Janthinobacterium sp. Marseille] gb|ABR88356.1| Flagellar hook-length control protein [Janthinobacterium sp. Marseille] Length = 391 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 101/227 (44%), Positives = 129/227 (56%), Gaps = 14/227 (6%) Query: 304 DAKPAIDLGAAAKAEPKDDASALTARAQLNKATPELAAPAARQDAA---PAAPTPVVLPA 360 D A+D E K+ A + +++ AT A + A P V A Sbjct: 176 DFVAALDKATKGGTEAKNTPVAAPVKTEIDLATAIAQGSKALEPATVTTPQTVAAVTAAA 235 Query: 361 MQQAAVASQPQAVFAPAYSDKIQSNVGSAGWNQALGTKITWMATAGMQSASLSLNPPDLG 420 +QQ + A PQ S+KI VG+ GW+QALG K+ WM QSA+L+LNPPDLG Sbjct: 236 LQQLSDAQGPQ-------SNKIAPQVGNPGWDQALGQKVLWMVQGAQQSATLTLNPPDLG 288 Query: 421 PMQVVLNVHNQQADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQANVQTGMPNQQQ 480 PMQV L+V N QA A F QPEV+ ALEAAMP+LREM++ AGIQLGQ+NV G PNQQ Sbjct: 289 PMQVTLHVSNNQATANFTAHQPEVRHALEAAMPRLREMLNDAGIQLGQSNVSAGTPNQQ- 347 Query: 481 GAGNGQQQARSGSSGSFGKEQEADVAVNGTATATATTSGLGLVDTFA 527 G+ +Q +SGS+ + AD AV+ + SG GLVDTFA Sbjct: 348 --GSFGEQRQSGSARQSNQVDIADAAVH-VSHVPVPASGNGLVDTFA 391 >ref|YP_001100156.1| flagellar hook-length control protein [Herminiimonas arsenicoxydans] gb|AAV68361.1| FliK [Herminiimonas arsenicoxydans] emb|CAL62032.1| putative flagellar hook-length control protein FliK [Herminiimonas arsenicoxydans] Length = 392 Score = 97.4 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 147/411 (35%), Positives = 191/411 (46%), Gaps = 50/411 (12%) Query: 117 FNQVLNSQVSTRVQDNQAQARQAQQNADTQAANAQAAAKQAATNQQSQTAANNASKSAAN 176 FNQVL+ +++ R N A + A N +A+ + A N S T A +KSA N Sbjct: 32 FNQVLSREIAGR---NNADSNTATHNTQKEAS-GKGDGTTNAKNDNSNTTAAETAKSAEN 87 Query: 177 DGSDQSSQVSDKDEDEDSSDTATQASAELLALVANIAQNAVKPAADGKAKGDGSAADLLA 236 + + + VS KDE + + AT SAELLA VA + Q A +A +A D LA Sbjct: 88 EKA-AALAVSKKDEADPA---ATDPSAELLAFVAALTQ-----ANTAQAPAADTAPDTLA 138 Query: 237 QAKRGSGKLSLSDQQQALADDKQGKVDPAALQDALAAAKGKQDAAASELARKSNAEANPA 296 K A D K+D + A A G + A + Sbjct: 139 TTK---------------AADIDTKLDADSTLAATTTAAGSEKDAIGK------------ 171 Query: 297 PQASNAKDAKPAIDLGAAAKAEPKDDASALTARAQLNKATPELAAPAARQDAAPAAPTPV 356 D A+D A E +A +A A+ + AA A T Sbjct: 172 -----KSDFVSALDKATVAANENSKTPAAASAAAKGDADLAVAAATTTAAAKAIEPATVS 226 Query: 357 VLPAMQQAAVASQPQAVFAPAYSDKIQSNVGSAGWNQALGTKITWMATAGMQSASLSLNP 416 + A Q A S K+ VGS GW+QALG K+ WM Q+A+L+LNP Sbjct: 227 NPQTIAINTAALQHLNETRNAQSAKLAPQVGSPGWDQALGQKVVWMIQGAQQTATLTLNP 286 Query: 417 PDLGPMQVVLNVHNQQADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQANVQTGMP 476 PDLGPMQV LNV N QA A F QPEV+QALEAAMP+LREM++ AGIQLGQ++V G P Sbjct: 287 PDLGPMQVTLNVSNNQATANFTAHQPEVRQALEAAMPRLREMLNDAGIQLGQSSVSAGSP 346 Query: 477 NQQQGAGNGQQQARSGSSGSFGKEQEADVAVNGTATATATTSGLGLVDTFA 527 NQQQ +G QQ R S + A V + +SG G+VDTFA Sbjct: 347 NQQQTSGEQQQGGRQAS-----RNDNAVEPVIHVSHVPLPSSGSGMVDTFA 392 >ref|ZP_03588743.1| flagellar hook-length control protein [Burkholderia multivorans CGD1] gb|EED96807.1| flagellar hook-length control protein [Burkholderia multivorans CGD1] Length = 449 Score = 79.0 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 86/148 (58%), Gaps = 8/148 (5%) Query: 386 VGSAGWNQALGTKITWMATAGMQSASLSLNPPDLGPMQVVLNVHNQQADATFITAQPEVK 445 VG+A W AL K+ +++ A QSA L+LNPPDLGP+QVVL V + A A F++ +V+ Sbjct: 304 VGTADWTDALSQKVVFLSNAHQQSAELTLNPPDLGPLQVVLRVADNHAHALFVSQHAQVR 363 Query: 446 QALEAAMPKLREMMDQAGIQLGQANVQTG------MPNQQQGAGNGQQQARSGSSGSFGK 499 A+EAA+PKLR+ M+ G+ LG A V G P QQ G Q+A GSSG+ Sbjct: 364 DAVEAALPKLRDAMEAGGLGLGSATVSDGGFASRQQPQQQFAGGRPSQRAGGGSSGADAP 423 Query: 500 EQEADVAVNGTATATATTSGLGLVDTFA 527 A A T+ A + GLVDTFA Sbjct: 424 VDAAASATAATSAAVVQRA--GLVDTFA 449 >ref|YP_001120980.1| flagellar hook-length control protein [Burkholderia vietnamiensis G4] gb|ABO56145.1| flagellar hook-length control protein [Burkholderia vietnamiensis G4] Length = 472 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 71/168 (42%), Positives = 96/168 (57%), Gaps = 12/168 (7%) Query: 367 ASQPQAVFAPAYSDKIQSNVGSAGWNQALGTKITWMATAGMQSASLSLNPPDLGPMQVVL 426 AS A A + + +VG+A W AL K+ +++ A QSA L+LNPPDLGP+QVVL Sbjct: 310 ASPVAGSIAAANAHVLAPHVGTADWTDALSQKVVFLSNAHQQSAELTLNPPDLGPLQVVL 369 Query: 427 NVHNQQADATFITAQPEVKQALEAAMPKLREMMDQAGIQLGQANVQTG-------MPNQQ 479 V + A A F++ P+V+ A+EAA+PKLRE M+ G+ LG A V G Q Sbjct: 370 RVADNHAHALFVSQHPQVRDAVEAALPKLREAMEAGGLGLGSATVSDGGFGSQQNAQQQA 429 Query: 480 QGAGNGQQQARSGSSGSFGKEQEADVAVNGTATATATTSGLGLVDTFA 527 G +AR+GSSG+ +A + +A A AT S GLVDTFA Sbjct: 430 FAGGRPSSRARAGSSGA-----DAPLDAAPSAAAAATVSRAGLVDTFA 472