BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1390.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775460.1| flagellar motor switch protein FliM [Herbasp... 630 e-178 ref|YP_001353124.1| flagellar motor switch protein FliM [Janthin... 512 e-143 ref|YP_001100159.1| flagellar motor switch protein FliM [Hermini... 511 e-143 ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobac... 508 e-142 ref|YP_003050538.1| flagellar motor switch protein FliM [Methylo... 482 e-134 >ref|YP_003775460.1| flagellar motor switch protein FliM [Herbaspirillum seropedicae SmR1] gb|ADJ63552.1| flagellar motor switch FliM protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 333/334 (99%), Positives = 334/334 (100%) Query: 1 MAEHFLSQEEVDALLKGVTGDEDEEKIVEEAPGTVRTYNLATQERIVRGRMPTLEIINER 60 MAEHFLSQEEVDALLKGVTGDEDEEK+VEEAPGTVRTYNLATQERIVRGRMPTLEIINER Sbjct: 1 MAEHFLSQEEVDALLKGVTGDEDEEKVVEEAPGTVRTYNLATQERIVRGRMPTLEIINER 60 Query: 61 FARLFRIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 FARLFRIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP Sbjct: 61 FARLFRIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 Query: 121 QFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFI 180 QFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFI Sbjct: 121 QFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFI 180 Query: 181 RSEMNTQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALE 240 RSEMNTQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALE Sbjct: 181 RSEMNTQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALE 240 Query: 241 VDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPV 300 VDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPV Sbjct: 241 VDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPV 300 Query: 301 MECSYGQSNGQYALRVEKLLSITHQETPESFQGD 334 MECSYGQSNGQYALRVEKLLSITHQETPESFQGD Sbjct: 301 MECSYGQSNGQYALRVEKLLSITHQETPESFQGD 334 >ref|YP_001353124.1| flagellar motor switch protein FliM [Janthinobacterium sp. Marseille] gb|ABR89067.1| FliM flagellar motor switch protein [Janthinobacterium sp. Marseille] Length = 332 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 244/320 (76%), Positives = 285/320 (89%), Gaps = 1/320 (0%) Query: 1 MAEHFLSQEEVDALLKGVTGDEDEEKIVEEAPGTVRTYNLATQERIVRGRMPTLEIINER 60 MA++FLSQEEVDALLKGV GD+DE E++ G VR YNLATQERIVRGRMPTLEIINER Sbjct: 1 MADNFLSQEEVDALLKGVNGDQDETGKPEDSAG-VRPYNLATQERIVRGRMPTLEIINER 59 Query: 61 FARLFRIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 F+RL RIGLFNF+HR+AE+S+GPV+VSKYSEFIRNLVVPTNLNL+H+KP RG GL+V DP Sbjct: 60 FSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGTGLIVLDP 119 Query: 121 QFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFI 180 VF+LVDN+FGGDGRFHTR+EGR+FT TEQRII R+L I FETYAKSWEP+YP+EFE+I Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFEYI 179 Query: 181 RSEMNTQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALE 240 RSEMNTQFANIATPNEVVV+TTFT+ELGPVSG++H CTPY+MIEP+RD LTSSMQGE LE Sbjct: 180 RSEMNTQFANIATPNEVVVATTFTIELGPVSGDMHFCTPYAMIEPIRDLLTSSMQGETLE 239 Query: 241 VDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPV 300 +DKRWIRLM QQIQTAEVE++ N G+A+V D+L+MQ GD+IP+ T+ A+VD VPV Sbjct: 240 MDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMQKGDIIPIAVPDTITAEVDSVPV 299 Query: 301 MECSYGQSNGQYALRVEKLL 320 MECSYG+ NGQYALRVEKL+ Sbjct: 300 MECSYGKLNGQYALRVEKLI 319 >ref|YP_001100159.1| flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] gb|AAV68363.1| FliM [Herminiimonas arsenicoxydans] emb|CAL62035.1| Flagellar motor switch protein FliM [Herminiimonas arsenicoxydans] Length = 332 Score = 511 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 244/320 (76%), Positives = 285/320 (89%), Gaps = 1/320 (0%) Query: 1 MAEHFLSQEEVDALLKGVTGDEDEEKIVEEAPGTVRTYNLATQERIVRGRMPTLEIINER 60 MA++FLSQEEVDALLKGV GD+DE E++ G VR YNLATQERIVRGRMPTLEIINER Sbjct: 1 MADNFLSQEEVDALLKGVNGDQDEAGKPEDSTG-VRPYNLATQERIVRGRMPTLEIINER 59 Query: 61 FARLFRIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 F+RL RIGLFNF+HR+AE+S+GPV+VSKYSEFIRNLVVPTNLNL+H+KP RGIGL+V DP Sbjct: 60 FSRLLRIGLFNFLHRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLIHMKPLRGIGLIVLDP 119 Query: 121 QFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFI 180 VF+LVDN+FGGDGRFHTR+EGR+FT TEQRII R+L I FETYAKSWEP+YP+EFE+I Sbjct: 120 NLVFLLVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILGIIFETYAKSWEPVYPVEFEYI 179 Query: 181 RSEMNTQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALE 240 RSEMNTQFANIATPNEVVV+TTFT+ELGPVSG++H C PYSMIEP+RD LTSSMQGE LE Sbjct: 180 RSEMNTQFANIATPNEVVVATTFTIELGPVSGDLHFCVPYSMIEPIRDLLTSSMQGETLE 239 Query: 241 VDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPV 300 +DKRWIRLM QQIQTAEVE++ N G+A+V D+L+M++GD+I + V A+VDGVPV Sbjct: 240 MDKRWIRLMTQQIQTAEVEILANMGSAKVTLGDILNMKIGDIISIAVPEQVTAEVDGVPV 299 Query: 301 MECSYGQSNGQYALRVEKLL 320 MECSYG+ NGQYALRVEKL+ Sbjct: 300 MECSYGKLNGQYALRVEKLI 319 >ref|ZP_08272769.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] gb|EGF33768.1| Flagellar motor switch protein FliM [Oxalobacteraceae bacterium IMCC9480] Length = 333 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 247/334 (73%), Positives = 287/334 (85%), Gaps = 4/334 (1%) Query: 1 MAEHFLSQEEVDALLKGVTGDEDEEKIVEEAPGTVRTYNLATQERIVRGRMPTLEIINER 60 MA++FLSQEEVDALLKGV GD+++ E+ G VR YNLATQERIVRGRMPTLEIINER Sbjct: 1 MADNFLSQEEVDALLKGVNGDQEDAHAPEDQSG-VRPYNLATQERIVRGRMPTLEIINER 59 Query: 61 FARLFRIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 FARL RIGLFNF+ R+AE+S+GPV+VSKYSEFIRNLVVPTNLNLVH+KP RG L+VFDP Sbjct: 60 FARLLRIGLFNFLRRSAEVSIGPVRVSKYSEFIRNLVVPTNLNLVHMKPLRGTVLMVFDP 119 Query: 121 QFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFI 180 VF++VDN+FGGDGRFHTR+EGR+FT TEQRII R+L I FE YAKSWEP+YP+EFE+I Sbjct: 120 NLVFLIVDNLFGGDGRFHTRVEGRDFTQTEQRIIQRILAIVFENYAKSWEPVYPVEFEYI 179 Query: 181 RSEMNTQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALE 240 RSEMNTQFANIATPNEVV+ TTFT+ELGPVSGE+H C PYS IEP+RD LTSS+QGE LE Sbjct: 180 RSEMNTQFANIATPNEVVICTTFTIELGPVSGEMHFCIPYSTIEPIRDILTSSLQGETLE 239 Query: 241 VDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPV 300 VDKRWIRLM QQIQTAEVE+I +FG AR NF +L+M+VGD+IPL V A+VDGVPV Sbjct: 240 VDKRWIRLMTQQIQTAEVEIIADFGVARSNFGAILNMKVGDIIPLAVPDVVLAKVDGVPV 299 Query: 301 MECSYGQSNGQYALRVEKLLSITHQETPESFQGD 334 MEC+YG+ NGQYALRVEKLL+ Q + ++ GD Sbjct: 300 MECTYGKFNGQYALRVEKLLA---QSSTDALHGD 330 >ref|YP_003050538.1| flagellar motor switch protein FliM [Methylovorus glucosetrophus SIP3-4] ref|YP_004039208.1| flagellar motor switch protein flim [Methylovorus sp. MP688] gb|ACT50011.1| flagellar motor switch protein FliM [Methylovorus glucosetrophus SIP3-4] gb|ADQ83972.1| flagellar motor switch protein FliM [Methylovorus sp. MP688] Length = 334 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 236/326 (72%), Positives = 269/326 (82%), Gaps = 1/326 (0%) Query: 1 MAEHFLSQEEVDALLKGVTGDEDEEKIVEEAPGTVRTYNLATQERIVRGRMPTLEIINER 60 MA+ FLSQ+EVDALLKGV D+D+ VE P VR YNLATQERIVRGRMPTLEIINER Sbjct: 1 MADSFLSQDEVDALLKGVGLDQDDTP-VEHDPHGVREYNLATQERIVRGRMPTLEIINER 59 Query: 61 FARLFRIGLFNFIHRTAEISVGPVKVSKYSEFIRNLVVPTNLNLVHIKPFRGIGLVVFDP 120 FARL RIGLFNF+ R+ E+SVGPV++SKYSEF+RNLVVPTNLNLVH+ P RG GL+VFDP Sbjct: 60 FARLLRIGLFNFMRRSVEVSVGPVRISKYSEFVRNLVVPTNLNLVHMNPLRGTGLMVFDP 119 Query: 121 QFVFMLVDNMFGGDGRFHTRIEGREFTPTEQRIIMRVLEITFETYAKSWEPIYPIEFEFI 180 VF +VDNMFGGDGRFHTRIEGR+FT TEQRII RVL I E Y KSWEP+Y ++FE++ Sbjct: 120 SLVFSIVDNMFGGDGRFHTRIEGRDFTQTEQRIIQRVLAIVIENYEKSWEPVYQVKFEYL 179 Query: 181 RSEMNTQFANIATPNEVVVSTTFTVELGPVSGEIHICTPYSMIEPVRDRLTSSMQGEALE 240 RSEMNTQFANIATPNEV+V+TTF++ELGP GEIH C PYSMIEPVRD LTSS+QGE L Sbjct: 180 RSEMNTQFANIATPNEVIVATTFSIELGPAGGEIHFCFPYSMIEPVRDLLTSSLQGEVLG 239 Query: 241 VDKRWIRLMKQQIQTAEVELIVNFGTARVNFTDLLHMQVGDVIPLQTNTTVEAQVDGVPV 300 VDKRW+RLM QQIQ AEVEL+ N AR+ D+L+M+VGDVIPL + T+EA VD VPV Sbjct: 240 VDKRWVRLMTQQIQAAEVELVANLAKARMQLGDVLNMKVGDVIPLNISETIEAHVDNVPV 299 Query: 301 MECSYGQSNGQYALRVEKLLSITHQE 326 MEC YG NGQY+LRVEKLL E Sbjct: 300 MECKYGVFNGQYSLRVEKLLRANASE 325