BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1389.p (151 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775459.1| flagellar motor switch/type III secretion pr... 258 2e-67 ref|YP_001353123.1| FliN flagellar motor switch/type III secreto... 191 3e-47 ref|YP_001100160.1| motor switch protein [Herminiimonas arsenico... 180 8e-44 ref|YP_003050539.1| flagellar motor switch protein FliN [Methylo... 178 3e-43 ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus fl... 174 3e-42 >ref|YP_003775459.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] gb|ADJ63551.1| flagellar motor switch/type III secretion protein [Herbaspirillum seropedicae SmR1] Length = 151 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 149/151 (98%), Positives = 150/151 (99%) Query: 1 MADENVAGAGAAEDDPWGAAMAEQTEAEEAQKKGEMEDEKGISAAPAMATVFKDLSAADI 60 MADENVAGAGAAEDDPWGAAMAEQT+AEEAQKKGEMEDEKGISAAPAMATVFKDLSA DI Sbjct: 1 MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDI 60 Query: 61 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI Sbjct: 61 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120 Query: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR Sbjct: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 >ref|YP_001353123.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] gb|ABR88612.1| FliN flagellar motor switch/type III secretory pathway protein [Janthinobacterium sp. Marseille] Length = 139 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 115/151 (76%), Positives = 120/151 (79%), Gaps = 12/151 (7%) Query: 1 MADENVAGAGAAEDDPWGAAMAEQTEAEEAQKKGEMEDEKGISAAPAMATVFKDLSAADI 60 MADEN +D WGAAMAEQ + E A I A PA ATVFKD + D+ Sbjct: 1 MADENEPQTTVEDD--WGAAMAEQEQTEAA----------AIDAKPASATVFKDFAGGDL 48 Query: 61 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120 KT T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLI Sbjct: 49 KTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLI 108 Query: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR Sbjct: 109 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 139 >ref|YP_001100160.1| motor switch protein [Herminiimonas arsenicoxydans] gb|AAV68364.1| FliN [Herminiimonas arsenicoxydans] emb|CAL62036.1| Flagellar motor switch protein FliN [Herminiimonas arsenicoxydans] Length = 141 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 110/151 (72%), Positives = 120/151 (79%), Gaps = 10/151 (6%) Query: 1 MADENVAGAGAAEDDPWGAAMAEQTEAEEAQKKGEMEDEKGISAAPAMATVFKDLSAADI 60 M++EN + A +D WGAAMAEQ + E ++ A ATVFKD S D+ Sbjct: 1 MSEENASQTTA--EDGWGAAMAEQEQTEAEAAA--------MAPKAASATVFKDFSGGDL 50 Query: 61 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120 KT T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLI Sbjct: 51 KTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLI 110 Query: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 AQGEVVVVNDKFGIRLTDIITP+ERIRKLNR Sbjct: 111 AQGEVVVVNDKFGIRLTDIITPSERIRKLNR 141 >ref|YP_003050539.1| flagellar motor switch protein FliN [Methylovorus glucosetrophus SIP3-4] ref|YP_004039209.1| flagellar motor switch protein flin [Methylovorus sp. MP688] gb|ACT50012.1| flagellar motor switch protein FliN [Methylovorus glucosetrophus SIP3-4] gb|ADQ83973.1| flagellar motor switch protein FliN [Methylovorus sp. MP688] Length = 145 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 11/138 (7%) Query: 14 DDPWGAAMAEQTEAEEAQKKGEMEDEKGISAAPAMATVFKDLSAADIKTNTPNDIDFILD 73 +D WGAAMAEQ +AE++ + A PA ATVF +L+ + + T NDIDFILD Sbjct: 19 EDDWGAAMAEQQQAEDSP----------LQAKPAQATVFTELTGKKM-SETQNDIDFILD 67 Query: 74 IPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFG 133 IPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFG Sbjct: 68 IPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFG 127 Query: 134 IRLTDIITPAERIRKLNR 151 IRLTDIITPAERIRK+NR Sbjct: 128 IRLTDIITPAERIRKINR 145 >ref|YP_546078.1| flagellar motor switch FliN [Methylobacillus flagellatus KT] gb|ABE50237.1| Flagellar motor switch FliN [Methylobacillus flagellatus KT] Length = 142 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 102/137 (74%), Positives = 114/137 (83%), Gaps = 6/137 (4%) Query: 15 DPWGAAMAEQTEAEEAQKKGEMEDEKGISAAPAMATVFKDLSAADIKTNTPNDIDFILDI 74 D WGAAMAEQ++AE+A+ ++D K A VF + S+ + T NDIDFILDI Sbjct: 12 DDWGAAMAEQSQAEQAEASA-LQDNKA-----EQAPVFTEFSSKNKLHETQNDIDFILDI 65 Query: 75 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGI 134 PVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLIAQGEVVVVNDKFGI Sbjct: 66 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGI 125 Query: 135 RLTDIITPAERIRKLNR 151 RLTDIITPAERIRK+N+ Sbjct: 126 RLTDIITPAERIRKINK 142