BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1388.p         (155 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775458.1| flagellar biogenesis protein FliO [Herbaspir...   121   4e-26
ref|YP_001353122.1| FliO flagellar protein [Janthinobacterium sp...   110   9e-23
ref|YP_003846854.1| flagellar biosynthetic protein FliO [Gallion...    94   5e-18
ref|YP_001100161.1| putative FliO (partial) [Herminiimonas arsen...    92   2e-17
ref|ZP_08272767.1| Flagellar biosynthesis protein fliO [Oxalobac...    89   3e-16

>ref|YP_003775458.1| flagellar biogenesis protein FliO [Herbaspirillum seropedicae SmR1]
 gb|ADJ63550.1| flagellar biogenesis FliO protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 83/117 (70%), Positives = 96/117 (82%), Gaps = 2/117 (1%)

Query: 41  LPSATGSVFTMLLGLTAVLAIMAGIAWLFKRTGLVQRAQGNAVAKVVGGVSVGTRERVMV 100
           LPS+ GSVFTMLLGLT VLA++A +AWLFKR GL Q   GNA AKVVGGVSVGTRERVMV
Sbjct: 77  LPSSGGSVFTMLLGLTVVLAVLAAVAWLFKRFGLNQGLAGNAAAKVVGGVSVGTRERVMV 136

Query: 101 IEVADQWIVIGVAPGRVNTLATMPRQEHVAAPASAA--SANFSSWLKNTIDKRNGSS 155
           IEV +QWIV+GVAPGRVN LATMPRQ   AA A A   +  F++WLK+T+DKRNG++
Sbjct: 137 IEVGEQWIVVGVAPGRVNALATMPRQTLAAAQAGATGHAPAFATWLKHTMDKRNGAA 193


>ref|YP_001353122.1| FliO flagellar protein [Janthinobacterium sp. Marseille]
 gb|ABR88887.1| FliO flagellar protein [Janthinobacterium sp. Marseille]
          Length = 149

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 77/138 (55%), Positives = 99/138 (71%), Gaps = 4/138 (2%)

Query: 19  AVVPVALAAGAAHA---AEQQTAPALPSATGSVFTMLLGLTAVLAIMAGIAWLFKRTGLV 75
           A++ VA +A  A+A   A   T  A+PS  G++F +LLGL  VLA+MAG AWL +R    
Sbjct: 12  ALLTVAFSASTAYAETAATVTTGSAVPSTAGNLFQVLLGLVVVLALMAGAAWLLRRFN-T 70

Query: 76  QRAQGNAVAKVVGGVSVGTRERVMVIEVADQWIVIGVAPGRVNTLATMPRQEHVAAPASA 135
            +   NA  K+VGGVSVG+RERV+V+E+ADQWIV+GVAPGRVN+LATM +QE    P + 
Sbjct: 71  AKGISNANIKIVGGVSVGSRERVVVVEIADQWIVVGVAPGRVNSLATMQKQETTLTPEAP 130

Query: 136 ASANFSSWLKNTIDKRNG 153
           +S NFSSWL  TI+KRNG
Sbjct: 131 SSGNFSSWLAQTIEKRNG 148


>ref|YP_003846854.1| flagellar biosynthetic protein FliO [Gallionella capsiferriformans
           ES-2]
 gb|ADL55090.1| flagellar biosynthetic protein FliO [Gallionella capsiferriformans
           ES-2]
          Length = 152

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 81/134 (60%), Gaps = 6/134 (4%)

Query: 26  AAGAAHAAEQQTAPALPSATGSVFTMLLGLTAVLAIMAGIAWLFKRTGLVQRAQGNAVAK 85
           AA AA  A     P +PS++GS+  +   L  VLA++  IAWL KR  + Q   GN + K
Sbjct: 16  AAIAAEIARPAYTPPVPSSSGSLLQISFSLLLVLAVIMTIAWLLKRMNIAQHGTGNLL-K 74

Query: 86  VVGGVSVGTRERVMVIEVADQWIVIGVAPGRVNTLATMPRQEHVAAPASAASA-----NF 140
           VVG +++G RERV++IEV D W++IGV PG++ TL T+P+ + +    ++ S       F
Sbjct: 75  VVGSIAIGQRERVVMIEVDDTWVLIGVGPGQIRTLHTLPKTDELQDLTTSGSTGTPDNKF 134

Query: 141 SSWLKNTIDKRNGS 154
           +S L + I  RNG+
Sbjct: 135 ASLLSSIIKPRNGN 148


>ref|YP_001100161.1| putative FliO (partial) [Herminiimonas arsenicoxydans]
 gb|AAV68365.1| FliO [Herminiimonas arsenicoxydans]
 emb|CAL62037.1| Putative flagellar protein FliO [Herminiimonas arsenicoxydans]
          Length = 147

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 53/93 (56%), Positives = 68/93 (73%), Gaps = 5/93 (5%)

Query: 62  MAGIAWLFKRTGLVQRAQGNAVA--KVVGGVSVGTRERVMVIEVADQWIVIGVAPGRVNT 119
           MA  AW+ +R      A+G++ A  K++GGVSVG RERV+V+E+ADQWIV+GVAPGRVN 
Sbjct: 56  MAAAAWMLRR---FTGAKGSSAANIKIIGGVSVGNRERVVVVEIADQWIVVGVAPGRVNA 112

Query: 120 LATMPRQEHVAAPASAASANFSSWLKNTIDKRN 152
           L+TMPRQE      +  + NFSSWL  TI+KRN
Sbjct: 113 LSTMPRQETPVITDAPPAKNFSSWLAQTIEKRN 145


>ref|ZP_08272767.1| Flagellar biosynthesis protein fliO [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33766.1| Flagellar biosynthesis protein fliO [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 158

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 65/133 (48%), Positives = 85/133 (63%), Gaps = 4/133 (3%)

Query: 22  PVALAAGAAHAAEQQTAPALPSAT--GSVFTMLLGLTAVLAIMAGIAWLFKRTGLVQRAQ 79
           P  LAA    A    TA    ++T  GS+  +++GL  VL ++  +AW  K+ G  + A 
Sbjct: 9   PALLAAPQIFAQAVTTAAPASTSTSPGSMLQVMVGLILVLGLLIAVAWSMKKMGAGKHAA 68

Query: 80  GNAVAKVVGGVSVGTRERVMVIEVADQWIVIGVAPGRVNTLATMPRQEHVAAPASAASA- 138
             A+ K+VGGVSVG RER++V+EVADQWIV+GV P  +N L+TMP+QE V   A A  A 
Sbjct: 69  AGAL-KIVGGVSVGNRERILVVEVADQWIVVGVTPTSINALSTMPKQEGVELSAVAPLAK 127

Query: 139 NFSSWLKNTIDKR 151
           NFS WLK TIDKR
Sbjct: 128 NFSDWLKQTIDKR 140