BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1386.p         (200 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775457.1| flagellar biosynthetic protein FliP [Herbasp...   302   2e-80
ref|YP_546076.1| flagellar biosynthesis protein FliP [Methylobac...   275   3e-72
gb|AAV68366.1| FliP [Herminiimonas arsenicoxydans]                    274   6e-72
ref|YP_001353121.1| flagellar biosynthesis protein FliP [Janthin...   270   9e-71
ref|YP_004039211.1| flagellar biosynthetic protein flip [Methylo...   266   1e-69

>ref|YP_003775457.1| flagellar biosynthetic protein FliP [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63549.1| flagellar biosynthetic protein FliP precursor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  302 bits (774), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 192/200 (96%), Positives = 199/200 (99%)

Query: 1   MLLLTSLSFIPAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPV 60
           MLLLTSLSF+PAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPV
Sbjct: 45  MLLLTSLSFLPAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPV 104

Query: 61  FDRIYTEAYQPFAENKIQMMEALDKGAAPLKEFMLKQTRQADLALYVKLSRGPALQGPED 120
           FDRIYT+AYQPFAENKIQMMEALDKGA PLKEFMLKQTR++DLALYVKLSRGPALQGPED
Sbjct: 105 FDRIYTDAYQPFAENKIQMMEALDKGAQPLKEFMLKQTRESDLALYVKLSRGPALQGPED 164

Query: 121 VPLRLLVPAFVTSELKTSFQIGFAIFIPFLIIDMVVASILMSMGMMMMSPAIVSLPFKLM 180
           VPLRLLVPAFVTSELKT+FQIGFAIF+PFLIIDMVVASILMSMGMMMMSPA+VSLPFKLM
Sbjct: 165 VPLRLLVPAFVTSELKTAFQIGFAIFLPFLIIDMVVASILMSMGMMMMSPALVSLPFKLM 224

Query: 181 LFVLVDGWQLLIGSLAQSFY 200
           LFVLVDGWQLLIGSLAQSFY
Sbjct: 225 LFVLVDGWQLLIGSLAQSFY 244


>ref|YP_546076.1| flagellar biosynthesis protein FliP [Methylobacillus flagellatus
           KT]
 gb|ABE50235.1| flagellar biosynthetic protein FliP [Methylobacillus flagellatus
           KT]
          Length = 250

 Score =  275 bits (703), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 163/200 (81%), Positives = 186/200 (93%)

Query: 1   MLLLTSLSFIPAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPV 60
           ++LLTSL+F+PAALLMMT FTRI+IVLSLLRQALGTQS+PP QVLVGL+LFLTFFVM PV
Sbjct: 51  LILLTSLTFLPAALLMMTGFTRIIIVLSLLRQALGTQSSPPNQVLVGLALFLTFFVMGPV 110

Query: 61  FDRIYTEAYQPFAENKIQMMEALDKGAAPLKEFMLKQTRQADLALYVKLSRGPALQGPED 120
           F+RIYTEAYQPF E +I M EA+ +G+ PLKEFMLKQTR++DLAL+ K+SR  A+  PE+
Sbjct: 111 FERIYTEAYQPFDEERITMQEAMVRGSIPLKEFMLKQTRESDLALFFKMSRADAVATPEE 170

Query: 121 VPLRLLVPAFVTSELKTSFQIGFAIFIPFLIIDMVVASILMSMGMMMMSPAIVSLPFKLM 180
           VPLR+LVPAFVTSELKT+FQIGFAIFIPFLIIDMVVASILMSMGMMM+SPAIV+LPFKLM
Sbjct: 171 VPLRVLVPAFVTSELKTAFQIGFAIFIPFLIIDMVVASILMSMGMMMVSPAIVALPFKLM 230

Query: 181 LFVLVDGWQLLIGSLAQSFY 200
           LFVLVDGWQLL+GSLAQSFY
Sbjct: 231 LFVLVDGWQLLLGSLAQSFY 250


>gb|AAV68366.1| FliP [Herminiimonas arsenicoxydans]
          Length = 271

 Score =  274 bits (700), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 158/190 (83%), Positives = 177/190 (93%)

Query: 11  PAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTEAYQ 70
           PA LLMMT FTRI+IVLSLLRQALGTQS+PP QV++GLSLFLT FVMSPV D+IY +AYQ
Sbjct: 82  PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 141

Query: 71  PFAENKIQMMEALDKGAAPLKEFMLKQTRQADLALYVKLSRGPALQGPEDVPLRLLVPAF 130
           PF+ NKIQM EALDK  APLK FM+KQTR++DLALYVK+S+GP LQGPED+PLR+LVPAF
Sbjct: 142 PFSANKIQMGEALDKAVAPLKTFMIKQTRESDLALYVKMSKGPELQGPEDIPLRILVPAF 201

Query: 131 VTSELKTSFQIGFAIFIPFLIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQL 190
           +TSELKT+FQI FAIFIPFLIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQL
Sbjct: 202 ITSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQL 261

Query: 191 LIGSLAQSFY 200
           LIGSLAQSFY
Sbjct: 262 LIGSLAQSFY 271


>ref|YP_001353121.1| flagellar biosynthesis protein FliP [Janthinobacterium sp.
           Marseille]
 gb|ABR88433.1| Flip component of flagellar biosynthesis pathway [Janthinobacterium
           sp. Marseille]
          Length = 252

 Score =  270 bits (690), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 160/190 (84%), Positives = 178/190 (93%)

Query: 11  PAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTEAYQ 70
           PA LLMMT FTRI+IVLSLLRQALGTQS+PP QV++GLSLFLT FVMSPV D+IY +AYQ
Sbjct: 63  PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 122

Query: 71  PFAENKIQMMEALDKGAAPLKEFMLKQTRQADLALYVKLSRGPALQGPEDVPLRLLVPAF 130
           PF++NKIQM EALDK  APLK FM+KQTR++DLALYVKLS+GP LQGPED+PLR+LVPAF
Sbjct: 123 PFSQNKIQMQEALDKAVAPLKTFMIKQTRESDLALYVKLSKGPELQGPEDIPLRILVPAF 182

Query: 131 VTSELKTSFQIGFAIFIPFLIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQL 190
           VTSELKT+FQI FAIFIPFLIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQL
Sbjct: 183 VTSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQL 242

Query: 191 LIGSLAQSFY 200
           LIGSLAQSFY
Sbjct: 243 LIGSLAQSFY 252


>ref|YP_004039211.1| flagellar biosynthetic protein flip [Methylovorus sp. MP688]
 gb|ADQ83975.1| flagellar biosynthetic protein FliP [Methylovorus sp. MP688]
          Length = 270

 Score =  266 bits (681), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 151/190 (79%), Positives = 175/190 (92%)

Query: 11  PAALLMMTCFTRIVIVLSLLRQALGTQSTPPTQVLVGLSLFLTFFVMSPVFDRIYTEAYQ 70
           PA LLMMT FTRI+IVLSLLRQALGT ++PP QVLVGL+LFLTFFVMSPV D+IY EAYQ
Sbjct: 81  PAVLLMMTGFTRIIIVLSLLRQALGTPTSPPNQVLVGLALFLTFFVMSPVMDKIYVEAYQ 140

Query: 71  PFAENKIQMMEALDKGAAPLKEFMLKQTRQADLALYVKLSRGPALQGPEDVPLRLLVPAF 130
           P +ENKI + EAL+KGAAPLK FMLKQTR+AD+AL++++SR  A+ GPE  PLR+LVPAF
Sbjct: 141 PLSENKITLQEALEKGAAPLKTFMLKQTREADIALFMRISRSDAVDGPEQTPLRVLVPAF 200

Query: 131 VTSELKTSFQIGFAIFIPFLIIDMVVASILMSMGMMMMSPAIVSLPFKLMLFVLVDGWQL 190
           +TSELKT+FQIGFAIFIPFLIIDMVVAS+LMSMGMMM+SPAIV+LPFKLMLFVLVDGWQL
Sbjct: 201 MTSELKTAFQIGFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLFVLVDGWQL 260

Query: 191 LIGSLAQSFY 200
           ++GSLA+SFY
Sbjct: 261 VLGSLAESFY 270