BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1385.p         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001353120.1| FliQ component of flagellar biosynthesis pat...   100   9e-20
ref|ZP_08272765.1| Flagellar biosynthesis protein fliQ [Oxalobac...    98   4e-19
ref|YP_001100163.1| flagellar biosynthetic protein fliQ [Hermini...    95   3e-18
ref|YP_003050542.1| flagellar biosynthetic protein FliQ [Methylo...    94   6e-18
ref|YP_003775456.1| flagellar biosynthesis protein FliQ [Herbasp...    93   2e-17

>ref|YP_001353120.1| FliQ component of flagellar biosynthesis pathway
          [Janthinobacterium sp. Marseille]
 gb|ABR88417.1| FliQ component of flagellar biosynthesis pathway
          [Janthinobacterium sp. Marseille]
          Length = 98

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 67/88 (76%), Positives = 80/88 (90%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLIVSIFQAATQINEATLTFIPKLVGVFL 60
          MTPE+VMTMGR A+EVTL++AAPML+ AL IGLIVSIFQAATQINE TL+FIPKL+G+F+
Sbjct: 10 MTPETVMTMGRHAIEVTLMVAAPMLLVALGIGLIVSIFQAATQINETTLSFIPKLIGIFV 69

Query: 61 ALIIAGPWMLSVMLDYMRLMFTGIPAMV 88
          AL++AGPWML+V+LDYMR MFT IP  V
Sbjct: 70 ALVVAGPWMLTVLLDYMREMFTNIPLYV 97


>ref|ZP_08272765.1| Flagellar biosynthesis protein fliQ [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF33764.1| Flagellar biosynthesis protein fliQ [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 89

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 70/88 (79%), Positives = 82/88 (93%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLIVSIFQAATQINEATLTFIPKLVGVFL 60
          MTPESVM MGR AMEVTL++AAP+L+ ALLIGLIVSIFQAATQINE TL+FIPKLVG+F+
Sbjct: 1  MTPESVMVMGRHAMEVTLMVAAPLLMVALLIGLIVSIFQAATQINEQTLSFIPKLVGIFV 60

Query: 61 ALIIAGPWMLSVMLDYMRLMFTGIPAMV 88
           L+IAGPWMLS+MLDYMR MF+GIP+M+
Sbjct: 61 TLVIAGPWMLSIMLDYMREMFSGIPSMI 88


>ref|YP_001100163.1| flagellar biosynthetic protein fliQ [Herminiimonas
          arsenicoxydans]
 emb|CAL62039.1| Flagellar biosynthetic protein FliQ [Herminiimonas
          arsenicoxydans]
          Length = 89

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 69/88 (78%), Positives = 80/88 (90%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLIVSIFQAATQINEATLTFIPKLVGVFL 60
          MTPE+VMTMGR A+E+TL++AAPML+ AL IGLIVSIFQAATQINE TL+FIPKLVG+FL
Sbjct: 1  MTPETVMTMGRHAIEITLMVAAPMLLVALGIGLIVSIFQAATQINETTLSFIPKLVGIFL 60

Query: 61 ALIIAGPWMLSVMLDYMRLMFTGIPAMV 88
          ALIIAGPWML+V+LDYMR  FT IP +V
Sbjct: 61 ALIIAGPWMLTVLLDYMRETFTNIPLLV 88


>ref|YP_003050542.1| flagellar biosynthetic protein FliQ [Methylovorus glucosetrophus
          SIP3-4]
 ref|YP_004039212.1| flagellar biosynthetic protein fliq [Methylovorus sp. MP688]
 gb|ACT50015.1| flagellar biosynthetic protein FliQ [Methylovorus glucosetrophus
          SIP3-4]
 gb|ADQ83976.1| flagellar biosynthetic protein FliQ [Methylovorus sp. MP688]
          Length = 89

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 68/87 (78%), Positives = 79/87 (90%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLIVSIFQAATQINEATLTFIPKLVGVFL 60
          MTPE VMT+GRQAMEVTL+++APMLI  L+IGL+VSIFQAATQINE TL+FIPKLVGVF 
Sbjct: 1  MTPEGVMTLGRQAMEVTLMVSAPMLIVVLVIGLLVSIFQAATQINETTLSFIPKLVGVFA 60

Query: 61 ALIIAGPWMLSVMLDYMRLMFTGIPAM 87
           L+IAGPWMLSVMLDYMR +FT IP++
Sbjct: 61 VLVIAGPWMLSVMLDYMRAIFTSIPSL 87


>ref|YP_003775456.1| flagellar biosynthesis protein FliQ [Herbaspirillum seropedicae
          SmR1]
 gb|ADJ63548.1| flagellar biosynthetic FliQ protein [Herbaspirillum seropedicae
          SmR1]
          Length = 89

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/89 (83%), Positives = 85/89 (95%)

Query: 1  MTPESVMTMGRQAMEVTLLIAAPMLITALLIGLIVSIFQAATQINEATLTFIPKLVGVFL 60
          MTPESVMTMGRQAME+TLLIAAPML+TALLIGL+VSIFQAATQINE TL FIPKL+GVFL
Sbjct: 1  MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60

Query: 61 ALIIAGPWMLSVMLDYMRLMFTGIPAMVQ 89
          A+I+AGPW+L+V++DYM  MF+GIPAMVQ
Sbjct: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMVQ 89