BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1384.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775455.1| flagellar biosynthesis protein FliR [Herbasp... 354 9e-96 ref|YP_001353119.1| FliR component of the flagellar biosynthesis... 234 1e-59 emb|CAL62040.2| Flagellar biosynthetic protein FliR [Herminiimon... 233 2e-59 ref|ZP_08272764.1| Flagellar biosynthesis protein FliR [Oxalobac... 218 6e-55 ref|YP_315370.1| flagellar biosynthesis protein FliR [Thiobacill... 203 2e-50 >ref|YP_003775455.1| flagellar biosynthesis protein FliR [Herbaspirillum seropedicae SmR1] gb|ADJ63547.1| FliR component of the flagellar biosynthesis pathway [Herbaspirillum seropedicae SmR1] Length = 267 Score = 354 bits (908), Expect = 9e-96, Method: Composition-based stats. Identities = 234/267 (87%), Positives = 254/267 (95%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKILLGIAIGAVLAPDVPI 60 M+ +S QLY+W+A FIWP TRILGL+A+APPFGSASVPMLVK+LLG+AIGAV+APDVPI Sbjct: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 Query: 61 PPAIDPMSMTGLLILLQQLLIGLSMGFAMRVVFAAVEAAGELTSSTMGLSFAAFFDPQTQ 120 PPAI+P SMTG++ILLQQLLIGLSMGFAMR+VFAAVEAAGE TS+TMGLSFAAFFDPQTQ Sbjct: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 Query: 121 GRTAVISQVFSLLATMVFINLNGHLLLLQVMAESFHTLPITGVPITTEGFHQLGLWGAKV 180 GRTAVISQVFSLLATMVF+NLNGHL+LLQVMAESFHTLPITG PITTEGFHQL LWGAK+ Sbjct: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGILTRAAPQLNLFGIGFSITMLAGFILIAFALPYMLTP 240 FSMGLQLSLPLLIALLITNFALG+LTRAAPQLNLFGIGFSITMLAGFILI LPYMLTP Sbjct: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 Query: 241 LQRFLSDGVEMVRLLGSVPPVNALPKP 267 +Q+ LSDGVEMVRLLGSVPPVNALPKP Sbjct: 241 VQKLLSDGVEMVRLLGSVPPVNALPKP 267 >ref|YP_001353119.1| FliR component of the flagellar biosynthesis pathway [Janthinobacterium sp. Marseille] gb|ABR89166.1| FliR component of the flagellar biosynthesis pathway [Janthinobacterium sp. Marseille] Length = 263 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 145/263 (55%), Positives = 199/263 (75%), Gaps = 1/263 (0%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKILLGIAIGAVLAPDVPI 60 MI++TSA+L WIAAF+WPLTRI+G+++VAP FG+ SVP VKI LGI + ++AP VP Sbjct: 1 MISLTSAELNTWIAAFLWPLTRIIGMISVAPLFGNVSVPARVKIGLGILLAMIIAPTVPA 60 Query: 61 PPAIDPMSMTGLLILLQQLLIGLSMGFAMRVVFAAVEAAGELTSSTMGLSFAAFFDPQTQ 120 PA+DPMS+ GLLIL QQL+IGLS+GFAMR+ FA VE AGE+ TMGL FA+FFDPQT+ Sbjct: 61 MPALDPMSLQGLLILAQQLIIGLSIGFAMRITFAGVEMAGEIIGMTMGLGFASFFDPQTR 120 Query: 121 GRTAVISQVFSLLATMVFINLNGHLLLLQVMAESFHTLPITGVPITTEGFHQLGLWGAKV 180 R++ ISQ +LL M+++ N HL++L +A+SF LPI+ ++ G ++ WG ++ Sbjct: 121 ARSSAISQFLALLTLMIYLATNLHLVVLSTLAQSFEMLPISSSFLSAGGMLEVVKWGGRI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGILTRAAPQLNLFGIGFSITMLAGFILIAFALPYMLTP 240 FS G+QLSLP++ ALLITN ALGILTRAAPQLN+FGIGF IT+ GFI+I LPY++ P Sbjct: 181 FSAGVQLSLPIVAALLITNIALGILTRAAPQLNIFGIGFPITIGVGFIMIGIVLPYLMNP 240 Query: 241 LQRFLSDGVE-MVRLLGSVPPVN 262 + + +G++ M R+ ++ P+N Sbjct: 241 IINLMQEGIDAMGRITVAMTPLN 263 >emb|CAL62040.2| Flagellar biosynthetic protein FliR [Herminiimonas arsenicoxydans] Length = 263 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 149/250 (59%), Positives = 196/250 (78%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKILLGIAIGAVLAPDVPI 60 MI +TSA+L WIA+F+WPLTRILGL++VAP FG+ SVP VKI LGI + ++AP VP Sbjct: 1 MITLTSAELNTWIASFLWPLTRILGLISVAPLFGNVSVPARVKISLGIMLALIIAPTVPA 60 Query: 61 PPAIDPMSMTGLLILLQQLLIGLSMGFAMRVVFAAVEAAGELTSSTMGLSFAAFFDPQTQ 120 PA+DPMS GLLIL+QQLLIGL+MGFAMR+VFA VE AGE+T TMGL FA+FFDPQT+ Sbjct: 61 LPAMDPMSPAGLLILVQQLLIGLTMGFAMRIVFAGVEMAGEITGMTMGLGFASFFDPQTR 120 Query: 121 GRTAVISQVFSLLATMVFINLNGHLLLLQVMAESFHTLPITGVPITTEGFHQLGLWGAKV 180 R++ ISQ +LL M++++ N HL++L +A+SF LPI+ ++TEGF Q+ WG ++ Sbjct: 121 ARSSAISQFLALLILMIYLSTNLHLVVLSTLAQSFELLPISSNFVSTEGFFQVVKWGGRI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGILTRAAPQLNLFGIGFSITMLAGFILIAFALPYMLTP 240 FS G+QLSLP++ ALL+TN ALGILTRAAPQLN+FGIGF IT+ GFI+IA LPY++ P Sbjct: 181 FSAGVQLSLPMVAALLMTNIALGILTRAAPQLNIFGIGFPITIGVGFIMIAIVLPYLMNP 240 Query: 241 LQRFLSDGVE 250 + +G++ Sbjct: 241 FINLMQEGID 250 >ref|ZP_08272764.1| Flagellar biosynthesis protein FliR [Oxalobacteraceae bacterium IMCC9480] gb|EGF33763.1| Flagellar biosynthesis protein FliR [Oxalobacteraceae bacterium IMCC9480] Length = 258 Score = 218 bits (556), Expect = 6e-55, Method: Composition-based stats. Identities = 140/255 (54%), Positives = 188/255 (73%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKILLGIAIGAVLAPDVPI 60 M+N +SA+L I F+WPLTRILGL+AVAP FG+ASVP +K+ LGI I ++AP V + Sbjct: 1 MLNFSSAELNALITGFLWPLTRILGLIAVAPVFGNASVPRRIKVGLGILIAMIVAPLVQV 60 Query: 61 PPAIDPMSMTGLLILLQQLLIGLSMGFAMRVVFAAVEAAGELTSSTMGLSFAAFFDPQTQ 120 P ++PMSM GLLIL+QQLLIG++MGF+MR++F+AVE AGE+ S TMGL FA FFDPQ++ Sbjct: 61 PSGLEPMSMQGLLILVQQLLIGIAMGFSMRIIFSAVEMAGEVASMTMGLGFATFFDPQSR 120 Query: 121 GRTAVISQVFSLLATMVFINLNGHLLLLQVMAESFHTLPITGVPITTEGFHQLGLWGAKV 180 GR+ +SQ SL+ MV++ N HL LL + +SF T+PIT P+ Q+ W +++ Sbjct: 121 GRSNAVSQFLSLIVLMVYLAANVHLALLSTLVDSFTTMPITVGPLAGNIAEQVVRWASRL 180 Query: 181 FSMGLQLSLPLLIALLITNFALGILTRAAPQLNLFGIGFSITMLAGFILIAFALPYMLTP 240 FS GLQL+LP++ ALLITN ALGILTRAAP LNLFGIGF IT+ GF ++ LPY+ TP Sbjct: 181 FSAGLQLALPIVAALLITNVALGILTRAAPSLNLFGIGFPITLTIGFAMLGLVLPYLATP 240 Query: 241 LQRFLSDGVEMVRLL 255 + + + + M+R L Sbjct: 241 MAKLFEETINMIRQL 255 >ref|YP_315370.1| flagellar biosynthesis protein FliR [Thiobacillus denitrificans ATCC 25259] gb|AAZ97565.1| flagellar biosynthesis protein FliR [Thiobacillus denitrificans ATCC 25259] Length = 262 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 130/250 (52%), Positives = 179/250 (71%) Query: 1 MINVTSAQLYIWIAAFIWPLTRILGLLAVAPPFGSASVPMLVKILLGIAIGAVLAPDVPI 60 MI++T AQL +W+ +FIWPLTRILGL+ VAP FG +VP VKI LGI I + AP +P Sbjct: 1 MISLTDAQLNVWLISFIWPLTRILGLVMVAPVFGHRAVPGRVKIGLGIFIALIAAPTLPP 60 Query: 61 PPAIDPMSMTGLLILLQQLLIGLSMGFAMRVVFAAVEAAGELTSSTMGLSFAAFFDPQTQ 120 PA+ S GL IL+QQ LIG+++GF MR+VFAAVEAAGE+ MGL FA+FFDPQ+ Sbjct: 61 MPAVGLGSWHGLFILVQQFLIGVAIGFIMRIVFAAVEAAGEIIGLQMGLGFASFFDPQSA 120 Query: 121 GRTAVISQVFSLLATMVFINLNGHLLLLQVMAESFHTLPITGVPITTEGFHQLGLWGAKV 180 G+T V+++ F++LA ++ + +N HLLLL V+ ESF LPI+ P+ GF + +G + Sbjct: 121 GQTLVLARFFNMLAVLLMLAVNAHLLLLGVLVESFQILPISHEPLAAAGFRNVAAFGTTI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGILTRAAPQLNLFGIGFSITMLAGFILIAFALPYMLTP 240 FS+GLQL+LPL+ LL+TN LGILTR+APQLN+F IGF IT+ G I++ LPY Sbjct: 181 FSLGLQLALPLIAILLMTNLTLGILTRSAPQLNIFAIGFPITLGVGLIMLDVTLPYFAPQ 240 Query: 241 LQRFLSDGVE 250 ++ ++ G++ Sbjct: 241 FEQLIASGLD 250