BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1381.p (474 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775452.1| outer membrane drug efflux lipoprotein [Herb... 555 e-156 ref|ZP_06686005.1| NodT family efflux transporter [Achromobacter... 399 e-109 gb|EGP45570.1| efflux transporter outer membrane factor lipoprot... 393 e-107 ref|YP_003976994.1| efflux transporter outer membrane factor lip... 387 e-105 ref|YP_787310.1| multidrug efflux outer membrane lipoprotein [Bo... 386 e-105 >ref|YP_003775452.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ63544.1| outer membrane drug efflux lipoprotein [Herbaspirillum seropedicae SmR1] Length = 470 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 336/465 (72%), Positives = 399/465 (85%) Query: 10 LSFPPPSRLALLLALALLGGCSSLVRTPYTAPVTQTPAAWQQRDPAAAVNASRWWQGFGD 69 +S P P RL+LLLAL LLG CS L R+ YT TQTPA+WQQR + RWWQGFGD Sbjct: 6 MSLPVPFRLSLLLALTLLGACSPLTRSAYTPVSTQTPASWQQRGSQPEADVQRWWQGFGD 65 Query: 70 ETLSALIDEALRKNNNLALATIKVRRAQLQAGIANDAFVPALSGQVGSTASKALDGNRQT 129 TL+ALIDEALRKNN+LALA IK+RRAQ QAG+A+DAFVPALS +G+++SK LDG+R + Sbjct: 66 ATLTALIDEALRKNNDLALAAIKLRRAQAQAGLADDAFVPALSASLGASSSKQLDGDRIS 125 Query: 130 ARSSQNSLSLSYEVDLWGRLGANYDVARWEALATEQDRAATALSLVGTTASLYWTGAYLN 189 R+SQ+S+ LSYEVDLWGRL A D++RWEALATEQDR +TAL+L+GTTA+LYWTGAYLN Sbjct: 126 TRASQSSVKLSYEVDLWGRLAAASDLSRWEALATEQDRQSTALTLIGTTANLYWTGAYLN 185 Query: 190 QRLRTAEQSIAYAQKTLDLINTQYRAGAVSSVDVLTAQQNLLSQQASYTELVQQQVENDN 249 QR+ TAEQSIAYA+KTL+L+ TQY+AGAVSSV+VL+AQQNL SQQ+SYTELVQQ+VENDN Sbjct: 186 QRVATAEQSIAYAEKTLELVRTQYQAGAVSSVEVLSAQQNLYSQQSSYTELVQQRVENDN 245 Query: 250 ALAILFDSPPGQRRSLPPALPEQPLPVLEAGLPAELLARRPDLQAAELRLRESLANVDLT 309 ALAILFD PPG+ +LP LPEQ LPVL AG+PAELL RRPDL+A ELR+R +LA VD Sbjct: 246 ALAILFDQPPGKAIALPARLPEQALPVLAAGVPAELLGRRPDLRALELRIRSALAGVDQA 305 Query: 310 RASFYPKLSLTGSLGTSSDALLRLVQNPVASLAAQLSLPFLQQTQMKLQIKVSQADYESA 369 R ++YP+LSLTG+LGTSSDALLRLVQNPVA+L L+LPFLQ ++MK ++ +SQAD+++A Sbjct: 306 RLNYYPQLSLTGTLGTSSDALLRLVQNPVATLGGALTLPFLQHSEMKFKVGISQADFDTA 365 Query: 370 VTQFRQTLYAAFSDVENALSARTQYARQQALLARNVEVARAAEQLYELRYRAGSVTLQSW 429 V FR+ LY AFS+VENALSAR QYARQQALL RN++ A+AAE+L E+RYRAGS TLQ W Sbjct: 366 VLNFRKGLYTAFSEVENALSARQQYARQQALLVRNLDAAQAAERLLEVRYRAGSATLQLW 425 Query: 430 LDQQDKRRSAENTLAQVRLNQLKNQMTLYQALGGDASVPAAIIAP 474 LDQQDKRR+AE +LAQVRLNQLKNQMTLYQALGGDASVPAAIIAP Sbjct: 426 LDQQDKRRTAEISLAQVRLNQLKNQMTLYQALGGDASVPAAIIAP 470 >ref|ZP_06686005.1| NodT family efflux transporter [Achromobacter piechaudii ATCC 43553] gb|EFF77080.1| NodT family efflux transporter [Achromobacter piechaudii ATCC 43553] Length = 470 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 246/445 (55%), Positives = 317/445 (71%), Gaps = 4/445 (0%) Query: 29 GCSSLVRTPYTAPVTQTPAAWQQRDPAAA----VNASRWWQGFGDETLSALIDEALRKNN 84 GC SL+RT Y P+TQ PAAW DPA A WW+ F D L LID L +NN Sbjct: 24 GCGSLLRTDYEPPLTQVPAAWTYGDPANAQAPLAQGGAWWRNFDDPVLDGLIDAVLARNN 83 Query: 85 NLALATIKVRRAQLQAGIANDAFVPALSGQVGSTASKALDGNRQTARSSQNSLSLSYEVD 144 +LA A I+VRRAQ QAG+ D +P L G T ++ L G+R R +Q L++SYEVD Sbjct: 84 DLAAAAIRVRRAQYQAGLTEDQLIPQLGGDASLTRNRNLYGDRAITRGNQAQLTVSYEVD 143 Query: 145 LWGRLGANYDVARWEALATEQDRAATALSLVGTTASLYWTGAYLNQRLRTAEQSIAYAQK 204 LWG+L D A+WEALATEQDR + ALSLVGTTA+LYW A++NQR+ ++E+SIAYA++ Sbjct: 144 LWGKLSRQRDAAQWEALATEQDRQSAALSLVGTTATLYWQTAFINQRIASSEESIAYARR 203 Query: 205 TLDLINTQYRAGAVSSVDVLTAQQNLLSQQASYTELVQQQVENDNALAILFDSPPGQRRS 264 T DL+ QY AG S++++ A+Q + SQQA++ LVQQ+VE NAL ILFD PP + + Sbjct: 204 TQDLVRAQYAAGGASALELAEAEQTVASQQAAHALLVQQRVEYTNALTILFDGPPDRSMA 263 Query: 265 LPPALPEQPLPVLEAGLPAELLARRPDLQAAELRLRESLANVDLTRASFYPKLSLTGSLG 324 PP LP PLP AG+PA+LL RRPDL+AAE+RLRESLANVD TR+SFYP ++LTG++G Sbjct: 264 NPPRLPPYPLPEARAGVPADLLGRRPDLRAAEMRLRESLANVDATRSSFYPPVTLTGAVG 323 Query: 325 TSSDALLRLVQNPVASLAAQLSLPFLQQTQMKLQIKVSQADYESAVTQFRQTLYAAFSDV 384 ++S L ++QNPVA+L L+LPFLQ QM+L IK+S+ADYE V FRQ LY A +DV Sbjct: 324 SASPTLSNMLQNPVATLGVGLTLPFLQWNQMQLNIKISKADYEERVVNFRQALYQAMADV 383 Query: 385 ENALSARTQYARQQALLARNVEVARAAEQLYELRYRAGSVTLQSWLDQQDKRRSAENTLA 444 ENALS RTQ Q LA ++ AR AE+LYE+RYRAG+V+L+ WLD Q+KRR+AE Sbjct: 384 ENALSNRTQLTLQGEQLALSLRAAREAERLYEVRYRAGAVSLKDWLDAQEKRRTAEIARD 443 Query: 445 QVRLNQLKNQMTLYQALGGDASVPA 469 + LN+L NQ+T+Y+ALGGD V A Sbjct: 444 ENGLNRLVNQVTVYRALGGDDQVQA 468 >gb|EGP45570.1| efflux transporter outer membrane factor lipoprotein 1 [Achromobacter xylosoxidans AXX-A] Length = 482 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 234/448 (52%), Positives = 309/448 (68%), Gaps = 6/448 (1%) Query: 29 GCSSLVRTPYTAPVTQTPAAWQQ------RDPAAAVNASRWWQGFGDETLSALIDEALRK 82 GC L+++ Y P TQ PAAW +A WW+ F D L L+D AL + Sbjct: 21 GCGGLLKSDYQTPATQAPAAWSHGADAAQAPASALAAGGAWWRNFNDPVLDGLVDGALAR 80 Query: 83 NNNLALATIKVRRAQLQAGIANDAFVPALSGQVGSTASKALDGNRQTARSSQNSLSLSYE 142 NN+LA A I+VRRAQLQAG+A D +P LSG T ++ L G R+ R++ LS+ YE Sbjct: 81 NNDLAAAAIRVRRAQLQAGLAQDQLIPQLSGNGSVTRTRNLRGEREITRTNSAELSIGYE 140 Query: 143 VDLWGRLGANYDVARWEALATEQDRAATALSLVGTTASLYWTGAYLNQRLRTAEQSIAYA 202 VDLWG+L D A WEALA+EQDR ++ALSLVGTTA+LYW A++NQR+ ++ +SIAYA Sbjct: 141 VDLWGKLSRQLDAAEWEALASEQDRQSSALSLVGTTATLYWQTAFINQRIASSLESIAYA 200 Query: 203 QKTLDLINTQYRAGAVSSVDVLTAQQNLLSQQASYTELVQQQVENDNALAILFDSPPGQR 262 +KT DL+ QY AG S++++ A+Q + SQQA++ LVQQ+VE NALAILFD PP + Sbjct: 201 RKTQDLVRAQYAAGGASALEMAEAEQTVASQQAAHALLVQQRVEYVNALAILFDGPPDRT 260 Query: 263 RSLPPALPEQPLPVLEAGLPAELLARRPDLQAAELRLRESLANVDLTRASFYPKLSLTGS 322 + P LP+ PLP G+PAELL RRPDL+AAELRLRESL+N+D ASFYP L+LTG+ Sbjct: 261 MADPQRLPQYPLPQAREGVPAELLGRRPDLRAAELRLRESLSNIDAAHASFYPTLNLTGA 320 Query: 323 LGTSSDALLRLVQNPVASLAAQLSLPFLQQTQMKLQIKVSQADYESAVTQFRQTLYAAFS 382 LG++S L ++QNPV +L L+LPFLQ ++ L +KVS+ D++ V FRQ LY A + Sbjct: 321 LGSTSPTLSNVLQNPVGTLTGALTLPFLQFNRLNLNLKVSRTDFDERVVSFRQALYQAMA 380 Query: 383 DVENALSARTQYARQQALLARNVEVARAAEQLYELRYRAGSVTLQSWLDQQDKRRSAENT 442 DVENALS RTQ Q L +++ AR AE+LYE+RYRAGSV+L+ WLD Q+KRR+AE Sbjct: 381 DVENALSNRTQLRLQAEQLEASLKAAREAERLYEVRYRAGSVSLRFWLDAQEKRRAAEIA 440 Query: 443 LAQVRLNQLKNQMTLYQALGGDASVPAA 470 + LN+L NQ+ +YQALGGD + A Sbjct: 441 RDENGLNRLVNQVKVYQALGGDDAAVVA 468 >ref|YP_003976994.1| efflux transporter outer membrane factor lipoprotein 1 [Achromobacter xylosoxidans A8] gb|ADP14279.1| efflux transporter, outer membrane factor lipoprotein, NodT family protein 1 [Achromobacter xylosoxidans A8] Length = 478 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 234/431 (54%), Positives = 307/431 (71%), Gaps = 5/431 (1%) Query: 36 TPYTAPVTQTPAAWQQR-----DPAAAVNASRWWQGFGDETLSALIDEALRKNNNLALAT 90 T + P+T TPAAW P + WW+ F D TL+ L+D AL +NN+LA A Sbjct: 28 TDFEPPLTSTPAAWSHAPAGSAQPEPLADGGEWWRNFSDPTLNGLVDAALARNNDLAAAA 87 Query: 91 IKVRRAQLQAGIANDAFVPALSGQVGSTASKALDGNRQTARSSQNSLSLSYEVDLWGRLG 150 I+VRRAQ QAGI D +P L G T ++ L G+R +R++ L++SYEVDLWG+L Sbjct: 88 IRVRRAQYQAGITEDKLLPQLGGSADVTRNRNLYGDRAISRTNAAQLTVSYEVDLWGKLS 147 Query: 151 ANYDVARWEALATEQDRAATALSLVGTTASLYWTGAYLNQRLRTAEQSIAYAQKTLDLIN 210 + D A+W+ALATEQDR + ALSLVGTTA+LYW A++NQR+ ++ +SIAYA+KT DL+ Sbjct: 148 SQRDAAQWDALATEQDRQSAALSLVGTTATLYWQTAFINQRIASSAESIAYARKTQDLVR 207 Query: 211 TQYRAGAVSSVDVLTAQQNLLSQQASYTELVQQQVENDNALAILFDSPPGQRRSLPPALP 270 QY AG S++++ A+Q + SQ+A++ LVQQ+VE NALAILFD PP + + P LP Sbjct: 208 AQYAAGGASALEMAEAEQTVASQEAAHALLVQQRVEYANALAILFDGPPDRMMADPARLP 267 Query: 271 EQPLPVLEAGLPAELLARRPDLQAAELRLRESLANVDLTRASFYPKLSLTGSLGTSSDAL 330 + PLP AG+PAELL RRPDL+AAELRLR+SL+ VD TRASFYP L+LTG+LG+SS L Sbjct: 268 QYPLPQARAGVPAELLGRRPDLRAAELRLRQSLSTVDATRASFYPPLTLTGALGSSSPTL 327 Query: 331 LRLVQNPVASLAAQLSLPFLQQTQMKLQIKVSQADYESAVTQFRQTLYAAFSDVENALSA 390 +++NPV SL A L+LPFLQ QM+L IK+S+ADYE V FRQ LY A +DVENALS Sbjct: 328 SDVLKNPVGSLGAALTLPFLQWNQMQLNIKISKADYEERVVNFRQALYQAMADVENALSN 387 Query: 391 RTQYARQQALLARNVEVARAAEQLYELRYRAGSVTLQSWLDQQDKRRSAENTLAQVRLNQ 450 RTQ Q L +++ AR AE+LYE+RYRAG+V L+ WLD Q+KRR AE + + LN+ Sbjct: 388 RTQLRLQGEQLDASLKAAREAERLYEVRYRAGAVPLKDWLDAQEKRRVAEVSRDENMLNR 447 Query: 451 LKNQMTLYQAL 461 L NQ+T+YQAL Sbjct: 448 LVNQVTVYQAL 458 >ref|YP_787310.1| multidrug efflux outer membrane lipoprotein [Bordetella avium 197N] emb|CAJ50423.1| multidrug efflux outer membrane lipoprotein [Bordetella avium 197N] Length = 454 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 240/448 (53%), Positives = 317/448 (70%) Query: 20 LLLALALLGGCSSLVRTPYTAPVTQTPAAWQQRDPAAAVNASRWWQGFGDETLSALIDEA 79 L+L LL L+RTPY P QTPA WQ A A + WW+ F D L L++ A Sbjct: 5 LMLGAPLLLAACGLMRTPYHPPAVQTPAEWQYAPQATAASGGMWWRNFQDPVLDTLVEAA 64 Query: 80 LRKNNNLALATIKVRRAQLQAGIANDAFVPALSGQVGSTASKALDGNRQTARSSQNSLSL 139 L +NN+LA+A +KVRRAQLQAG+A P LSG ++AL+G R T RS+ L+ Sbjct: 65 LARNNDLAVAALKVRRAQLQAGLAQADLHPTLSGTGSFNRNRALNGERATTRSTNVELAA 124 Query: 140 SYEVDLWGRLGANYDVARWEALATEQDRAATALSLVGTTASLYWTGAYLNQRLRTAEQSI 199 S+E+DLWGRL + D A W+A ATEQDR + ALSL+GTTA LYW A+LNQR+ ++ +SI Sbjct: 125 SWELDLWGRLSSARDAADWQAAATEQDRQSAALSLIGTTAKLYWQTAFLNQRMASSRESI 184 Query: 200 AYAQKTLDLINTQYRAGAVSSVDVLTAQQNLLSQQASYTELVQQQVENDNALAILFDSPP 259 AYA++TL+L+ TQY AG S +++ A++NL Q+A+Y EL QQ+VE N L ILFD PP Sbjct: 185 AYARRTLELVQTQYEAGGASGLEIAEAKENLAGQEAAYIELQQQKVEAVNGLTILFDGPP 244 Query: 260 GQRRSLPPALPEQPLPVLEAGLPAELLARRPDLQAAELRLRESLANVDLTRASFYPKLSL 319 + + P LP+ LP ++AGLPA LL RRPDL+AAE RLR ++A D TRAS+YP LSL Sbjct: 245 DRVAADPQRLPQGMLPGVDAGLPAGLLGRRPDLRAAEARLRAAMATSDATRASYYPSLSL 304 Query: 320 TGSLGTSSDALLRLVQNPVASLAAQLSLPFLQQTQMKLQIKVSQADYESAVTQFRQTLYA 379 TG+LG++S++L L+ NPVA+L + LSLPFL QM+L +++++ADYE V QFRQ LY Sbjct: 305 TGALGSASNSLGNLLANPVAALGSGLSLPFLNWNQMRLNLRIAEADYEILVAQFRQALYQ 364 Query: 380 AFSDVENALSARTQYARQQALLARNVEVARAAEQLYELRYRAGSVTLQSWLDQQDKRRSA 439 A +DVEN LSAR Q AR+ LL +E +R AE+LYE+RYRAG+V L+ WLD Q+KRR+A Sbjct: 365 AMADVENTLSARAQLARRARLLEAALEASRDAERLYEVRYRAGAVALRVWLDAQEKRRNA 424 Query: 440 ENTLAQVRLNQLKNQMTLYQALGGDASV 467 E + RL QL+NQ+ +YQALGGDA+V Sbjct: 425 EIAVDDNRLQQLRNQVDVYQALGGDAAV 452