BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1380.p (377 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775451.1| flagellar hook-filament junction protein [He... 513 e-143 ref|YP_315385.1| flagellar hook-associated protein FlgL [Thiobac... 185 1e-44 ref|YP_001100165.1| putative flagellar hook-associated protein 3... 175 1e-41 ref|YP_002799572.1| flagellar hook-associated protein FlgL [Azot... 172 7e-41 ref|YP_002946060.1| flagellar hook-associated protein FlgL [Vari... 155 1e-35 >ref|YP_003775451.1| flagellar hook-filament junction protein [Herbaspirillum seropedicae SmR1] emb|CAP19666.1| N-terminus flagellar protein [Herbaspirillum seropedicae] gb|ADJ63543.1| flagellar hook-filament junction protein, N-terminus flagellin protein [Herbaspirillum seropedicae SmR1] Length = 377 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 327/377 (86%), Positives = 352/377 (93%) Query: 1 MRISTQMLYQSSNNDLTSMQSQILKLTQQVTAQQKVLLPSDDPVAAARALDMTQTSALND 60 MRISTQM+YQSSNNDLTSMQSQ LKL+QQVTAQQ+VLLPSDDPVAAARALDM QT+ LN+ Sbjct: 1 MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60 Query: 61 QYKTNRQNANSALSTVQGTLDSLTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLNE 120 QYKTNRQNANSALS+VQG L+S+TNMLTKLKSNVITAGNASYSNAERINMASEIKGNL E Sbjct: 61 QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120 Query: 121 VLGYANAQDGQGNYIFSGFKSTTQPFTLDGTGGVVYNGDQGAMTLQVDSTRQMDISASGQ 180 VLGYANAQDGQGNY+F+GFKSTTQPFTLDGTGGVVYNGDQGAM+LQVDSTR MDISASGQ Sbjct: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRVMDISASGQ 180 Query: 181 TVFQGNGQDIFKTMTNLINVLSVPVTEAANKADDTAANNYVYPAGSGQTPIAAYKAAQAT 240 +FQGNGQDIFKTM N INVLSVPVTEAANKAD+TAANN+VYPAGSG TPIAAYK + A Sbjct: 181 AIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTSLAQ 240 Query: 241 LDAMKPDDPGYQAQFTSTAALKLQSDAANAARTPVVGSQAALARNLAQFNTQIDSISSSV 300 L+A+ P DP YQA FT+TAALKLQSDAA+AARTPVVGSQAAL RNLA FNTQIDS+ S+V Sbjct: 241 LNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASFNTQIDSLLSNV 300 Query: 301 STVKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNLSDTSELISDLTLKQTYLSAA 360 +T KASIGARQNELDNLDAAGEVNKENYTQTINNLLGRN SD ++LISD TL QTYLSAA Sbjct: 301 TTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYLSAA 360 Query: 361 QKVFVTTSGLTLLNYLK 377 QKVFVTTSGL+LLNYLK Sbjct: 361 QKVFVTTSGLSLLNYLK 377 >ref|YP_315385.1| flagellar hook-associated protein FlgL [Thiobacillus denitrificans ATCC 25259] gb|AAZ97580.1| flagellin, flagellar hook-associated protein 3 FlgL [Thiobacillus denitrificans ATCC 25259] Length = 300 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 99/216 (45%), Positives = 150/216 (69%) Query: 1 MRISTQMLYQSSNNDLTSMQSQILKLTQQVTAQQKVLLPSDDPVAAARALDMTQTSALND 60 MRISTQ L+++ L+ +QS ++K QQ++ ++VL P+DDPVAAARAL++TQ+ ++N Sbjct: 1 MRISTQTLFEAGAARLSELQSDMVKTQQQISTGRRVLTPADDPVAAARALEVTQSQSMNS 60 Query: 61 QYKTNRQNANSALSTVQGTLDSLTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLNE 120 QY NR A S+L+ V+G+L +T +L +K+ ++ AGN + + ER MA+E++G + Sbjct: 61 QYGVNRDYAKSSLAAVEGSLTGVTELLQDVKTTIVAAGNGTLGDMERGYMATELRGRFEQ 120 Query: 121 VLGYANAQDGQGNYIFSGFKSTTQPFTLDGTGGVVYNGDQGAMTLQVDSTRQMDISASGQ 180 +LG AN++D QGNY+FSGF++ T PF+ + V YNGD G +QVD+TRQ+ +S SGQ Sbjct: 121 LLGMANSRDAQGNYLFSGFQTATPPFSKNAGNAVTYNGDAGQRLMQVDTTRQLAVSHSGQ 180 Query: 181 TVFQGNGQDIFKTMTNLINVLSVPVTEAANKADDTA 216 +FQG GQD+F+T+ +LI VL P T +TA Sbjct: 181 AIFQGGGQDVFQTLNDLIAVLETPGTAGLTAGLETA 216 Score = 56.2 bits (134), Expect = 8e-06, Method: Composition-based stats. Identities = 38/97 (39%), Positives = 59/97 (60%), Gaps = 3/97 (3%) Query: 280 AALARNLAQFNTQIDSISSSVSTVKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRN 339 A L L N +ID +V TV+AS+G+R E+D LD+AGE Y++ ++ L Sbjct: 207 AGLTAGLETANGKIDLALDNVLTVRASVGSRLQEIDALDSAGEDRHLQYSEILSGLQDL- 265 Query: 340 LSDTSELISDLTLKQTYLSAAQKVFVTTSGLTLLNYL 376 D ++ +++L+ +Q L AAQK FV TSGL+L N++ Sbjct: 266 --DYTQALTELSKQQLTLEAAQKSFVKTSGLSLFNFI 300 >ref|YP_001100165.1| putative flagellar hook-associated protein 3 [Herminiimonas arsenicoxydans] emb|CAL62041.1| putative flagellar hook-associated protein 3 FlgL-like [Herminiimonas arsenicoxydans] Length = 403 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 142/407 (34%), Positives = 206/407 (50%), Gaps = 36/407 (8%) Query: 1 MRISTQMLYQSSNNDLTSMQSQILKLTQQVTAQQKVLLPSDDPVAAARALDMTQTSALND 60 MRIST +++ + + +Q+ +LK QQ++ +++L PSDDPVAAA AL M Q ++ND Sbjct: 1 MRISTNTIFEMGSGKIGDLQAAMLKTQQQISTNRRILAPSDDPVAAAAALGMEQAISIND 60 Query: 61 QYKTNRQNANSALSTVQGTLDSLTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLNE 120 Q TNR +A +ALS + L S+T +L +K VI+AGN + + +R A++++GN +E Sbjct: 61 QLATNRLSAKAALSEEESILQSVTLLLQSVKDIVISAGNGALDDVQRQMFATQLRGNFDE 120 Query: 121 VLGYANAQDGQGNYIFSGFKSTTQPFTLDGTGGVVYNGDQGAMTLQVDSTRQMDISASGQ 180 ++G AN +D GNYIF GF+S++ PF TG Y GDQG LQV RQ+ SG Sbjct: 121 LMGLANTRDSNGNYIFGGFQSSSPPFMQSATGA-DYTGDQGQRMLQVGPARQLASGDSGS 179 Query: 181 TVFQG--NGQDIFKTMTNLINVLSVPVTEAANKADDTAANNYVY---------------- 222 VF+G G F T L N + + +D T Y Sbjct: 180 AVFEGGVTGNGRFVTAAGLGNT-GTGIVSMGSVSDLTQLTGLAYDVTFSVDAITGETTYL 238 Query: 223 ---PAGSGQTPIAAYKAAQATLDAMKPDDPGYQAQ--------FTSTAALKLQSDAANAA 271 P + TP + M+ D G A T+ + +D Sbjct: 239 VNEPPPATPTPQLYVSGDPIEIGGMRFDIKGKPADGDTFSVKPSTNQSVFTTITDLLTTL 298 Query: 272 RTPVVG--SQAALARNLAQFNTQIDSISSSVSTVKASIGARQNELDNLDAAGEVNKENYT 329 T VG Q LA LA NT I ++ ++STV+ S+GAR E+DNLD+AG K YT Sbjct: 299 STSAVGPTGQTRLANGLASANTNIANVLDNISTVRTSVGARLKEIDNLDSAGADLKLQYT 358 Query: 330 QTINNLLGRNLSDTSELISDLTLKQTYLSAAQKVFVTTSGLTLLNYL 376 +T+++L D E S T +Q L AA++ F+ SGL+L N L Sbjct: 359 KTLSDLQD---IDPVEAYSRFTQQQFTLEAARQSFIKISGLSLFNML 402 >ref|YP_002799572.1| flagellar hook-associated protein FlgL [Azotobacter vinelandii DJ] gb|ACO78597.1| flagellar hook-associated protein [Azotobacter vinelandii DJ] Length = 401 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 141/405 (34%), Positives = 218/405 (53%), Gaps = 33/405 (8%) Query: 1 MRISTQMLYQSSNNDLTSMQSQILKLTQQVTAQQKVLLPSDDPVAAARALDMTQTSALND 60 MRIST +++ + L QS+ LK+ QQ+ + ++V+ PSDDP AA+RA+ ++Q+ A+N Sbjct: 1 MRISTVTMFEQGLSSLVRQQSEYLKVGQQIASGKRVVNPSDDPQAASRAISVSQSQAVNQ 60 Query: 61 QYKTNRQNANSALSTVQGTLDSLTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLNE 120 QY R + +ALS + L+S+ + + K+ ++ AGN + S+A+R ++ASEIKG Sbjct: 61 QYDDARVSTRNALSQEESVLNSIADAIASAKTRLVQAGNGTLSDADRSSLASEIKGIYES 120 Query: 121 VLGYANAQDGQGNYIFSGFKSTTQPFTLDGT-GGVVYNGDQGAMTLQVDSTRQMDISASG 179 +LG ANA DG G Y+F G++ ++ PF D T G V Y GD+G + QVD++RQM S +G Sbjct: 121 LLGQANATDGSGRYLFGGYQDSSPPFVKDNTSGAVAYQGDEGLILQQVDASRQMPSSDNG 180 Query: 180 QTVFQG-NGQDIFKTMTNLINVLSVPVTEAANKADDTAA---------------NNYVYP 223 + +FQ +G + + N +V T +D TAA + Y Sbjct: 181 KQIFQSVHGSAGYLAQADAGNAGTVTFT-GPYVSDSTAAGFGSGFTLDFAVATDGSVTYS 239 Query: 224 AGSGQTPIAAYKAAQATLDAMKPDDPGYQAQFTSTAALKLQSDAANAART---------P 274 + G T + ++ + G A S K Q+ + RT Sbjct: 240 SDGGTTQVPYADGQSIEINGLSLTLEGTPADGDSIVVEKAQNADPDLFRTLENMIAALDT 299 Query: 275 VVGSQAALAR---NLAQFNTQIDSISSSVSTVKASIGARQNELDNLDAAGEVNKENYTQT 331 V + A LAR L+ + ++D+ SV TV+AS+GAR NELD LDA G+ NY QT Sbjct: 300 PVETDADLARLQNTLSTSSRELDNALDSVLTVRASVGARLNELDVLDAVGDNRALNYKQT 359 Query: 332 INNLLGRNLSDTSELISDLTLKQTYLSAAQKVFVTTSGLTLLNYL 376 +++L+ D +E IS+ +L+Q L AAQK FV S L+L + L Sbjct: 360 LSDLIDL---DYNEAISEYSLRQVGLQAAQKAFVDISSLSLFDLL 401 >ref|YP_002946060.1| flagellar hook-associated protein FlgL [Variovorax paradoxus S110] gb|ACS20794.1| flagellar hook-associated protein 3 [Variovorax paradoxus S110] Length = 403 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 137/406 (33%), Positives = 206/406 (50%), Gaps = 33/406 (8%) Query: 1 MRISTQMLYQSSNNDLTSMQSQILKLTQQVTAQQKVLLPSDDPVAAARALDMTQTSALND 60 MRISTQ Y S + L S Q Q+ ++ QQ+ A K L +DDPVAAARAL ++Q+ A + Sbjct: 1 MRISTQSFYAQSMSSLGSQQQQLFRIQQQLAAGTKFLTAADDPVAAARALGVSQSMAESA 60 Query: 61 QYKTNRQNANSALSTVQGTLDSLTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLNE 120 QY T+R A +LS + L S T+++ +K+ + AGN + S+A+R ++A+ ++GNL++ Sbjct: 61 QYATSRSRAMLSLSQEETALKSATSIMQNMKTLAVQAGNGTLSDADRASLATTLQGNLDQ 120 Query: 121 VLGYANAQDGQGNYIFSGFKSTTQPFTLDGTGGVVYNGDQGAMTLQVDSTRQMDISASGQ 180 ++ ANA DG G ++F+GFKS +QPF GG+ Y GDQG +QVD +RQM + G+ Sbjct: 121 LVNVANADDGNGQFLFAGFKSGSQPFVAGAAGGIQYMGDQGQRLMQVDVSRQMSTTDDGR 180 Query: 181 TVFQG--------NGQDIFKTMTNLINVLSVPVTEAANKADD----TAANNY-------- 220 +VFQ + T + + + V AAN D + NY Sbjct: 181 SVFQSVQGGAGYVSSAGAANTGSGVFGAVGVTDAGAANYGKDFVISFSGGNYTVATQETP 240 Query: 221 -VYPAGSGQTPIAA--YKAAQATLDAMKPDDPGYQ---AQFTSTAALKLQSDAANAARTP 274 V A P AA + Q T+ D +Q A+ T + A R P Sbjct: 241 PVVAASGAYVPGAAISFGGLQITMSGAPADGDTFQVATARNAGTDVFAAIGELVTALRQP 300 Query: 275 VVG----SQAALARNLAQFNTQIDSISSSVSTVKASIGARQNELDNLDAAGEVNKENYTQ 330 + G ++A L L+ FN +I +V TV +SIG+R NE+D LD +G Sbjct: 301 LAGNGDSAKADLLNALSTFNVKITHAHDNVLTVMSSIGSRMNEIDALDTSGASRGLTDKA 360 Query: 331 TINNLLGRNLSDTSELISDLTLKQTYLSAAQKVFVTTSGLTLLNYL 376 ++ L+ D + IS+ +QT L A Q+ F + L NYL Sbjct: 361 YLSELVDL---DPASAISEFLQRQTSLQATQQTFARLHSIALFNYL 403