BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1376.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775449.1| flagellar basal-body protein FlgJ [Herbaspir... 558 e-157 ref|YP_001100167.1| flagellar biosynthesis protein FlgJ [Hermini... 327 1e-87 ref|YP_001353116.1| flagellum-specific muramidase [Janthinobacte... 307 2e-81 ref|YP_315387.1| mannosyl-glycoprotein endo-beta-N-acetylglucosa... 288 6e-76 ref|YP_003048378.1| flagellar rod assembly protein/muramidase Fl... 280 3e-73 >ref|YP_003775449.1| flagellar basal-body protein FlgJ [Herbaspirillum seropedicae SmR1] gb|ADJ63541.1| flagellar basal-body FlgJ protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 305/324 (94%), Positives = 318/324 (98%), Gaps = 1/324 (0%) Query: 1 MLNKINPSNPTEGLAVDANGLNGLREAAKQNTPESVKGAAKQFEALFLNMVMKSMRDATP 60 MLNKINPSNPTE LAVDANGLNGLREAAKQN+PES+KGAAKQFEALFLNM+MKSMRDATP Sbjct: 1 MLNKINPSNPTESLAVDANGLNGLREAAKQNSPESIKGAAKQFEALFLNMMMKSMRDATP 60 Query: 61 QNGPFDNEQTKMFTSMLDQQLSQSLAQRGVGLADVLTRQLSASLPKKLPDAQDLEGSPLP 120 QNGPFDNEQTKMFTSMLDQQLSQ+LAQRGVGLADVLTRQLSASLPKKLPDAQ+L+G Sbjct: 61 QNGPFDNEQTKMFTSMLDQQLSQTLAQRGVGLADVLTRQLSASLPKKLPDAQELDGQTPG 120 Query: 121 GEEGLPMGIPLVKDMSDADRAKFIQSFASQQAAESTDQDGRN-KQRRNSNKPAHVEAFQN 179 G+EGLPMGIPLVKDMS+ADRAKFIQSFASQQAAE+TDQDGRN KQRR++NKPAHVEAFQN Sbjct: 121 GDEGLPMGIPLVKDMSEADRAKFIQSFASQQAAENTDQDGRNGKQRRSTNKPAHVEAFQN 180 Query: 180 RLQADAEMASKMTGIPAKFMLAQAALETGWGKKEIVTRDGRSAHNLFGIKATGNWTGKVV 239 RLQADAE+ASKMTGIPAKFMLAQAALETGWGKKEI+TRDGRSAHNLFGIKATGNWTGKVV Sbjct: 181 RLQADAEIASKMTGIPAKFMLAQAALETGWGKKEIITRDGRSAHNLFGIKATGNWTGKVV 240 Query: 240 EATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQ 299 EATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQ Sbjct: 241 EATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQ 300 Query: 300 RAGYATDPHYAEKLSRIIRQSLSA 323 RAGYATDPHYAEKLSRIIRQSLSA Sbjct: 301 RAGYATDPHYAEKLSRIIRQSLSA 324 >ref|YP_001100167.1| flagellar biosynthesis protein FlgJ [Herminiimonas arsenicoxydans] emb|CAL62043.1| putative peptidoglycan hydrolase FlgJ-like (Muramidase FlgJ) [Herminiimonas arsenicoxydans] Length = 317 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 184/315 (58%), Positives = 227/315 (72%), Gaps = 4/315 (1%) Query: 9 NPTEGLAVDANGLNGLREAAKQNTPESVKGAAKQFEALFLNMVMKSMRDATPQNGPFDNE 68 N LA+D G+ L+++A+QN+P+S+K AAKQFEALF+NM+MKSMR+ATPQ G FDN+ Sbjct: 7 NSNSSLAIDTKGIESLKQSARQNSPDSLKAAAKQFEALFMNMIMKSMREATPQEGVFDNQ 66 Query: 69 QTKMFTSMLDQQLSQSLAQRGVGLADVLTRQLSASLPKKLPDAQDLEGSPLPGEEGLPMG 128 QTKM+TSMLDQQ+SQS+A +G+GLA+VL RQLS + + D + G +G Sbjct: 67 QTKMYTSMLDQQMSQSMANKGIGLAEVLIRQLSVN--NAVADTAAMSDERTSATGGNEIG 124 Query: 129 IPLVKDMSDADRAKFIQSFASQQAAESTDQDGRNKQRRNSNKPAHVEAFQNRLQADAEMA 188 L++ + D A+ E T S +PAHV+AFQN+L A AE A Sbjct: 125 --LMQAVQIRDIYGKHSKLAAAYEGEDTTVAAAEIAVSTSGQPAHVQAFQNKLNAHAEEA 182 Query: 189 SKMTGIPAKFMLAQAALETGWGKKEIVTRDGRSAHNLFGIKATGNWTGKVVEATTIEYIN 248 SK TGIPAKFML QAALE+GWGK + T DG S+HNLFGIKATG W GK V+A T EYIN Sbjct: 183 SKTTGIPAKFMLGQAALESGWGKHVMRTPDGGSSHNLFGIKATGGWKGKTVDAVTTEYIN 242 Query: 249 GKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQRAGYATDPH 308 G PQKRVEKFRAYDSYAD+F+DYA LL++NPRYEKVLA+A D GFA GLQRAGYATDP+ Sbjct: 243 GAPQKRVEKFRAYDSYADSFRDYAKLLKNNPRYEKVLANASDVQGFAQGLQRAGYATDPN 302 Query: 309 YAEKLSRIIRQSLSA 323 YA KL+ II ++LSA Sbjct: 303 YAAKLTHIINKNLSA 317 >ref|YP_001353116.1| flagellum-specific muramidase [Janthinobacterium sp. Marseille] gb|ABR88629.1| flagellum-specific muramidase [Janthinobacterium sp. Marseille] Length = 316 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 180/327 (55%), Positives = 233/327 (71%), Gaps = 29/327 (8%) Query: 9 NPTEGLAVDANGLNGLREAAKQNTPESVKGAAKQFEALFLNMVMKSMRDATPQNGPFDNE 68 N LA+DA GL L+++A+QN+P+S+K AAKQFEALF+NM+MKSMR+A+PQ+G DN+ Sbjct: 7 NSNSSLAIDAKGLESLKQSARQNSPDSLKAAAKQFEALFMNMIMKSMREASPQDGILDNQ 66 Query: 69 QTKMFTSMLDQQLSQSLAQRGVGLADVLTRQLS------------ASLPKKLPDAQDLEG 116 QTKM+TSMLDQQLSQ++A RGVGLADVL RQLS A K+LPD +L Sbjct: 67 QTKMYTSMLDQQLSQNMASRGVGLADVLIRQLSSNQMATAVTSDGADAAKELPDTSNLRA 126 Query: 117 SPLPGEEGLPMGIPLVKDMSDADRAKFIQSFASQQAAESTDQDGRNKQRRNSNKPAHVEA 176 ++++M++ + +S AA + G ++KPAHV+A Sbjct: 127 E-------------ILRNMAERNALAHQRS----NAAHAAQAGGGAAVASATSKPAHVQA 169 Query: 177 FQNRLQADAEMASKMTGIPAKFMLAQAALETGWGKKEIVTRDGRSAHNLFGIKATGNWTG 236 FQ+++ AE AS+ TGIPAKFM+ QAALE+GWGK+ + T DG S++NLFGIKA W G Sbjct: 170 FQDKVAVHAEEASRTTGIPAKFMMGQAALESGWGKRVMRTADGSSSNNLFGIKAGPGWKG 229 Query: 237 KVVEATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAY 296 K V+A T EY++G QKRVEKFRAYDSYAD+F+DYA L+R+NPRYEKVLA+A DA GFA Sbjct: 230 KTVDAVTTEYVDGVAQKRVEKFRAYDSYADSFRDYAQLMRNNPRYEKVLANASDAKGFAQ 289 Query: 297 GLQRAGYATDPHYAEKLSRIIRQSLSA 323 GLQRAGYATDP+YA KL+ II ++LSA Sbjct: 290 GLQRAGYATDPNYATKLTNIINRNLSA 316 >ref|YP_315387.1| mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Thiobacillus denitrificans ATCC 25259] gb|AAZ97582.1| mannosyl-glycoprotein endo-beta-N-acetylglucosamidase [Thiobacillus denitrificans ATCC 25259] Length = 294 Score = 288 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 162/314 (51%), Positives = 211/314 (67%), Gaps = 27/314 (8%) Query: 5 INPSNPTEGLAVDANGLNGLREAAKQNTPESVKGAAKQFEALFLNMVMKSMRDATPQNGP 64 I ++ + A+D G+N L+ A+Q++PE++K AA+QFEA+F+NM+MKSMR+ATPQ+G Sbjct: 3 IGGADLSSKFALDVQGVNQLKLDARQSSPEALKAAARQFEAVFMNMLMKSMREATPQDGM 62 Query: 65 FDNEQTKMFTSMLDQQLSQSLAQRGVGLADVLTRQLSASLPKKLPDAQDLEGSPLPGEEG 124 FD+EQT+M+TSMLDQQL+Q+LA RG+GLADV+ RQLS +L + P Sbjct: 63 FDSEQTRMYTSMLDQQLTQNLASRGIGLADVMVRQLSTALAAQAPG-------------- 108 Query: 125 LPMGIPLVKDMSDADRAKFIQSFASQQAAESTDQDGRNKQRRNSNKPAHVEAFQNRLQAD 184 P G +S+ A R + PAHV+AF RL Sbjct: 109 -PAG-----GLSEP-------GPALAPVPAPAPPQQAPGLTRGGDAPAHVQAFVQRLAPH 155 Query: 185 AEMASKMTGIPAKFMLAQAALETGWGKKEIVTRDGRSAHNLFGIKATGNWTGKVVEATTI 244 AE AS +GIPA+FML QAALETGWG+ EI DGR++HNLFGIKA WTG+ V+ T Sbjct: 156 AEAASASSGIPARFMLGQAALETGWGRSEIRGADGRNSHNLFGIKAGPGWTGRSVDVVTT 215 Query: 245 EYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQRAGYA 304 EY++G+PQK+VE+FRAYDSYAD+F+DYA LLR+N RY V+AS DA GFA+GLQ+AGYA Sbjct: 216 EYVDGRPQKQVERFRAYDSYADSFRDYARLLRNNARYADVVASGHDAAGFAHGLQQAGYA 275 Query: 305 TDPHYAEKLSRIIR 318 TDP YA KL +IR Sbjct: 276 TDPAYASKLVGVIR 289 >ref|YP_003048378.1| flagellar rod assembly protein/muramidase FlgJ [Methylotenera mobilis JLW8] gb|ACT47851.1| flagellar rod assembly protein/muramidase FlgJ [Methylotenera mobilis JLW8] Length = 325 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 157/314 (50%), Positives = 219/314 (69%), Gaps = 11/314 (3%) Query: 14 LAVDANGLNGLREAAKQNTPESVKGAAKQFEALFLNMVMKSMRDATPQNGPFDNEQTKMF 73 LA+DA+ LN L++AA++N+PE++KG AKQFEA+F+NM++KSMRDATPQ+G DN+Q++ F Sbjct: 19 LAIDASSLNNLKQAARENSPEAIKGVAKQFEAIFMNMMLKSMRDATPQDGLLDNDQSRTF 78 Query: 74 TSMLDQQLSQSLAQRGVGLADVLTRQLSA---SLPKKLPDAQDLEGSPLPGEEGLPMGIP 130 SMLDQQL+ +L+ +G+GLADVL RQLS + L A D + GL G+ Sbjct: 79 ISMLDQQLTSNLSSKGLGLADVLARQLSKNGYATNNALEQAVDNSTGLTDRQSGLNEGLI 138 Query: 131 LVKDMSDADRAKFIQSFASQQAAESTDQDGRNKQR-RNSNKPAHVEAFQNRLQADAEMAS 189 + A A QQ + ++ + N + ++FQ ++ A++AS Sbjct: 139 NNPFLHQA-------QIALQQNPSRLNHSMKDSNEFKPLNDDSSADSFQRKMAQHADVAS 191 Query: 190 KMTGIPAKFMLAQAALETGWGKKEIVTRDGRSAHNLFGIKATGNWTGKVVEATTIEYING 249 + TGIPA ML QAALE+GWGK+EI DG +++NLFGIKATGNW GKVVEA T EY+NG Sbjct: 192 RATGIPANLMLGQAALESGWGKREIRGADGTASNNLFGIKATGNWNGKVVEAVTSEYVNG 251 Query: 250 KPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQRAGYATDPHY 309 QKR+EKFRAYD+YAD+FKD+ANL+R+ PRYE V+A+ + G+A +Q+AGYATDP+Y Sbjct: 252 IKQKRIEKFRAYDNYADSFKDFANLMRNTPRYENVMANLDNVQGYAKAMQKAGYATDPNY 311 Query: 310 AEKLSRIIRQSLSA 323 AEKL+ +I++ S+ Sbjct: 312 AEKLTNVIKKVSSS 325