BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1374.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775447.1| flagellar basal-body L-ring protein [Herbasp... 315 4e-84 ref|YP_001100169.1| basal-body outer-membrane L (lipopolysacchar... 219 3e-55 ref|YP_001353114.1| FlgH flagellar basal body L-ring protein [Ja... 208 5e-52 ref|YP_004039218.1| flagellar l-ring protein [Methylovorus sp. M... 196 3e-48 ref|YP_315389.1| flagellar L-ring protein FlgH [Thiobacillus den... 196 3e-48 >ref|YP_003775447.1| flagellar basal-body L-ring protein [Herbaspirillum seropedicae SmR1] gb|ADJ63539.1| flagellar basal-body L-ring protein [Herbaspirillum seropedicae SmR1] Length = 219 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 194/219 (88%), Positives = 208/219 (94%) Query: 2 MKSMLKLATIAGVLSVSACTTVPDSIVTGPKTARPQPASYAPPTSGAIFQSAVYRPLLED 61 MKSMLK T+AG+L+V+ CTTVPDSIV GPK+ARPQPASYAPPTSGAIFQ AVYRPLLED Sbjct: 1 MKSMLKWVTLAGILAVAGCTTVPDSIVAGPKSARPQPASYAPPTSGAIFQGAVYRPLLED 60 Query: 62 RRARLVGDTITIVINEKTSAVKSAGSSASKTGTVASPAPTIFGTSIKELSASGTSSSKFE 121 RRARLVGDT+TIVINEKTSA KSA SSASKTG V SP PT FGTSIKEL+A+G+SS+KF+ Sbjct: 61 RRARLVGDTLTIVINEKTSAGKSAASSASKTGAVNSPVPTFFGTSIKELTANGSSSAKFD 120 Query: 122 DKGATSSSNTFTGTIGVTVVEVLPNGNLVVSGEKQVALDKGVEYVRFSGTVSPDNIQTGN 181 DKGAT+SSNTFTGTIGVTVVEVLPNGNLVV+GEKQVALDKGVEYVRFSGTVSPDNIQTGN Sbjct: 121 DKGATTSSNTFTGTIGVTVVEVLPNGNLVVAGEKQVALDKGVEYVRFSGTVSPDNIQTGN 180 Query: 182 TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 220 TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFS+SPF Sbjct: 181 TVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSISPF 219 >ref|YP_001100169.1| basal-body outer-membrane L (lipopolysaccharide layer) ring protein [Herminiimonas arsenicoxydans] sp|A4G6A8|FLGH_HERAR RecName: Full=Flagellar L-ring protein; AltName: Full=Basal body L-ring protein; Flags: Precursor emb|CAL62045.1| Flagellar L-ring protein precursor (Basal body L-ring protein) [Herminiimonas arsenicoxydans] Length = 223 Score = 219 bits (557), Expect = 3e-55, Method: Composition-based stats. Identities = 134/223 (60%), Positives = 165/223 (73%), Gaps = 4/223 (1%) Query: 2 MKSMLKLATIAGVLSVSACTTVPDSIVTGPKTARPQPAS-YAPPTSGAIFQSAVYRPLLE 60 MK L + G +SAC PD+IV P TARPQ AS APP +GAIFQ+A YRP+ E Sbjct: 1 MKKSLMALIVVGSFLLSACALRPDTIVNTPLTARPQAASTIAPPANGAIFQAAAYRPMFE 60 Query: 61 DRRARLVGDTITIVINEKTSAVKSAGSSASKTGTVASPAPTIFG---TSIKELSASGTSS 117 DRRARL+GDTITIVINEK+SA K AGS+ASKTG+V + AP +FG + LSASG+++ Sbjct: 61 DRRARLIGDTITIVINEKSSAGKQAGSAASKTGSVTASAPNVFGLLGSLTNRLSASGSNA 120 Query: 118 SKFEDKGATSSSNTFTGTIGVTVVEVLPNGNLVVSGEKQVALDKGVEYVRFSGTVSPDNI 177 K+EDKGA +SSN F T+ VTV++VL NGNL+V+GEKQV+LDKG E++RFSG V P + Sbjct: 121 IKYEDKGAVTSSNNFISTMTVTVIDVLSNGNLIVAGEKQVSLDKGSEFIRFSGVVDPSTV 180 Query: 178 QTGNTVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 220 +GN VSST VADAK+EYRTN+ VD A+ S L RFF SV P Sbjct: 181 NSGNIVSSTQVADAKIEYRTNSTVDGAEVASMLARFFLSVLPL 223 >ref|YP_001353114.1| FlgH flagellar basal body L-ring protein [Janthinobacterium sp. Marseille] gb|ABR88821.1| FlgH flagellar basal body L-ring protein [Janthinobacterium sp. Marseille] Length = 222 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 125/208 (60%), Positives = 155/208 (74%), Gaps = 4/208 (1%) Query: 17 VSACTTVPDSIVTGPKTARPQPAS-YAPPTSGAIFQSAVYRPLLEDRRARLVGDTITIVI 75 ++ C +P+++V P TA+PQ AS PP +GAIFQ+A YRP+ EDRRARL+GDTITI I Sbjct: 15 LAGCGGMPETVVQTPLTAKPQSASSITPPMNGAIFQTASYRPMFEDRRARLIGDTITITI 74 Query: 76 NEKTSAVKSAGSSASKTGTVASPAPTIFG---TSIKELSASGTSSSKFEDKGATSSSNTF 132 NE++SA K AGSS SKTGTVA+ AP+IFG SAS +S+SK+EDKG +S N F Sbjct: 75 NERSSAGKQAGSSGSKTGTVAAAAPSIFGLFGNVTDNFSASASSASKYEDKGVVTSGNNF 134 Query: 133 TGTIGVTVVEVLPNGNLVVSGEKQVALDKGVEYVRFSGTVSPDNIQTGNTVSSTLVADAK 192 T+ VTV++VL NGNLVV+GEKQVALDKG E++RFSG V P + GN VSST VADA+ Sbjct: 135 VSTLTVTVIDVLSNGNLVVAGEKQVALDKGGEFIRFSGVVDPATVGPGNVVSSTRVADAR 194 Query: 193 VEYRTNTRVDMADFMSSLGRFFFSVSPF 220 +EYRTN R+D A+ MS L RFF SV P Sbjct: 195 IEYRTNARIDAAEVMSMLARFFLSVMPL 222 >ref|YP_004039218.1| flagellar l-ring protein [Methylovorus sp. MP688] gb|ADQ83982.1| flagellar L-ring protein [Methylovorus sp. MP688] Length = 230 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 120/209 (57%), Positives = 144/209 (68%), Gaps = 2/209 (0%) Query: 12 AGVLSVSACTTVPDSIVTGPKTARPQPASYAPPTSGAIFQSAVYRPLLEDRRARLVGDTI 71 AG L++SACT P SI GP T +P PAS PPT+GAI+ A YRPL EDRRARL+GDT+ Sbjct: 24 AGALTLSACT--PTSITQGPLTTKPYPASARPPTNGAIYNVAAYRPLFEDRRARLIGDTL 81 Query: 72 TIVINEKTSAVKSAGSSASKTGTVASPAPTIFGTSIKELSASGTSSSKFEDKGATSSSNT 131 I I E TSA K+ GSSASK G+V S FG+ + + + S + D A ++SN Sbjct: 82 MINITENTSATKANGSSASKKGSVDSSVTASFGSPLPRAAFNSASDLSYTDAAAANASNV 141 Query: 132 FTGTIGVTVVEVLPNGNLVVSGEKQVALDKGVEYVRFSGTVSPDNIQTGNTVSSTLVADA 191 FTG+I VTV++VLPNG LVV GEKQVALDKG E+VR SG V+PD I NTV ST VADA Sbjct: 142 FTGSIAVTVLDVLPNGYLVVGGEKQVALDKGTEFVRLSGVVNPDTITAANTVPSTRVADA 201 Query: 192 KVEYRTNTRVDMADFMSSLGRFFFSVSPF 220 ++EYRTN+RVD A S L RFF S P Sbjct: 202 RIEYRTNSRVDAALVTSILSRFFLSFIPL 230 >ref|YP_315389.1| flagellar L-ring protein FlgH [Thiobacillus denitrificans ATCC 25259] sp|Q3SIE4|FLGH_THIDA RecName: Full=Flagellar L-ring protein; AltName: Full=Basal body L-ring protein; Flags: Precursor gb|AAZ97584.1| flagellar L-ring protein precursor FlgH [Thiobacillus denitrificans ATCC 25259] Length = 222 Score = 196 bits (497), Expect = 3e-48, Method: Composition-based stats. Identities = 119/222 (53%), Positives = 153/222 (68%), Gaps = 3/222 (1%) Query: 2 MKSMLKLATIAGVLSVSACTTVPDSIVTGPKTARPQPASYAPPTSGAIFQSAVYRPLLED 61 MK+ +A + +L ++AC T P +IV P TARPQ + P T+GAI+Q+A YRPL ED Sbjct: 1 MKTTRAIAMLGLLLGLAACGTTPSTIVERPTTARPQAPAAVPATNGAIYQAATYRPLFED 60 Query: 62 RRARLVGDTITIVINEKTSAVKSAGSSASKTGTVASPAPTIFGTSIKELSASGT---SSS 118 RRAR VGD +TIVINE+T A K A SSASKT V + + +K G +S+ Sbjct: 61 RRARHVGDVLTIVINERTRAGKEASSSASKTSAVDASVGGVAKLPLKMFQGLGINAEASA 120 Query: 119 KFEDKGATSSSNTFTGTIGVTVVEVLPNGNLVVSGEKQVALDKGVEYVRFSGTVSPDNIQ 178 ++ED+ A SSNTF+G + VTV+EVLPNGNLVV+GEKQ+ LDKG EY+R SG V PD IQ Sbjct: 121 EYEDESALDSSNTFSGNVTVTVIEVLPNGNLVVAGEKQIGLDKGTEYIRLSGVVQPDTIQ 180 Query: 179 TGNTVSSTLVADAKVEYRTNTRVDMADFMSSLGRFFFSVSPF 220 GNTVSS VADA++EYR++ + D A+ M+ LGRFF S P Sbjct: 181 AGNTVSSAKVADARIEYRSSAKFDKAEVMNWLGRFFLSFIPL 222