BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1372.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775445.1| flagellar basal body rod protein FlgF [Herba... 402 e-110 ref|YP_001100171.1| basal-body rod protein [Herminiimonas arseni... 293 2e-77 ref|ZP_08272756.1| Flagellar basal-body rod protein flgF [Oxalob... 292 3e-77 ref|YP_004039220.1| flagellar basal-body rod protein flgf [Methy... 289 2e-76 ref|YP_003050550.1| flagellar basal-body rod protein FlgF [Methy... 289 3e-76 >ref|YP_003775445.1| flagellar basal body rod protein FlgF [Herbaspirillum seropedicae SmR1] gb|ADJ63537.1| flagellar basal body rod FlgF protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 231/245 (94%), Positives = 241/245 (98%) Query: 1 MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPVVGQGLPTRAFVVDS 60 MDRLVYTAMSGAKHTLEQQA+ASNNLANATTTGFRAQLNTFR+APVVG GLPTR FVVDS Sbjct: 1 MDRLVYTAMSGAKHTLEQQATASNNLANATTTGFRAQLNTFRAAPVVGDGLPTRTFVVDS 60 Query: 61 TAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQNGQS 120 TAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQ+GQ+ Sbjct: 61 TAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQSGQT 120 Query: 121 VQGDGGPITIPPDTTVAIAADGTVSSIPTNGIPNAVNVLGRIKLVNPDEKNLKRGDDGLF 180 V GDGGPITIPPD TVAIAADGTVS+IPTNGIPNAVNVLGRIKLVNPDEKN+KRGDDGLF Sbjct: 121 VLGDGGPITIPPDATVAIAADGTVSAIPTNGIPNAVNVLGRIKLVNPDEKNMKRGDDGLF 180 Query: 181 RTITGAAQPDANVRLASGAVEGSNVNVVEAMVNMINLSRQFEMNMKVIQTAESDSTKATT 240 RTITGAAQPDANVRLASGA+EGSNVNVVEAMVNMINLSRQFEMNMK+IQTAESD+TKAT+ Sbjct: 181 RTITGAAQPDANVRLASGALEGSNVNVVEAMVNMINLSRQFEMNMKMIQTAESDATKATS 240 Query: 241 ILSLS 245 ILSLS Sbjct: 241 ILSLS 245 >ref|YP_001100171.1| basal-body rod protein [Herminiimonas arsenicoxydans] emb|CAL62047.1| Flagellar basal-body rod protein FlgF (Putative proximal rod protein) [Herminiimonas arsenicoxydans] Length = 246 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 159/246 (64%), Positives = 194/246 (78%), Gaps = 1/246 (0%) Query: 1 MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPVVGQGLPTRAFVVDS 60 MDRL+YTAM+GAK LEQQA+ ++NL+N +TTGFRAQL+TFR+ PVV LPTR FVVDS Sbjct: 1 MDRLIYTAMTGAKQILEQQATVTHNLSNVSTTGFRAQLDTFRAVPVVNAALPTRTFVVDS 60 Query: 61 TAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQNGQS 120 T GNDF GP Q TGR LDVAIQG+GW+AV+ ADG E YTR+GS K+NENG+LQTQ+G + Sbjct: 61 TVGNDFRAGPFQQTGRDLDVAIQGKGWLAVERADGTEGYTRSGSLKVNENGVLQTQSGLN 120 Query: 121 VQGDGGPITIPPDTTVAIAADGTVSSIPTNGIPNAVNVLGRIKLVNPDEKNLKRGDDGLF 180 V GDGGPI+IPPD + IA DGT+SS+ + P +GR+KLVNPDE NLKR DDGLF Sbjct: 121 VLGDGGPISIPPDVQITIAKDGTISSVESGSKPGQTIQVGRLKLVNPDEANLKRADDGLF 180 Query: 181 RTITGA-AQPDANVRLASGAVEGSNVNVVEAMVNMINLSRQFEMNMKVIQTAESDSTKAT 239 T G DA+V L SGAVEGSNVNVV+AMVNMI L+RQFE++M +++ AES++ KAT Sbjct: 181 VTKDGEDVAADADVSLVSGAVEGSNVNVVDAMVNMITLARQFELHMNMLKHAESNAAKAT 240 Query: 240 TILSLS 245 L+LS Sbjct: 241 EFLALS 246 >ref|ZP_08272756.1| Flagellar basal-body rod protein flgF [Oxalobacteraceae bacterium IMCC9480] gb|EGF33755.1| Flagellar basal-body rod protein flgF [Oxalobacteraceae bacterium IMCC9480] Length = 245 Score = 292 bits (747), Expect = 3e-77, Method: Composition-based stats. Identities = 161/245 (65%), Positives = 195/245 (79%), Gaps = 1/245 (0%) Query: 1 MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPVVGQGLPTRAFVVDS 60 MDR++YTAM+GAKH +EQQ++ +NNLANATTTGFRAQL+TFR+ PV G GL TRAFVVDS Sbjct: 1 MDRMIYTAMTGAKHVMEQQSTTANNLANATTTGFRAQLDTFRAVPVQGPGLATRAFVVDS 60 Query: 61 TAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQNGQS 120 T G DFSQG +Q TGRALDVAIQG+GW+AV DG EAYTR+GS K+NENG+LQTQ G + Sbjct: 61 TVGADFSQGALQQTGRALDVAIQGKGWLAVDMPDGTEAYTRHGSLKVNENGLLQTQGGLN 120 Query: 121 VQGDGGPITIPPDTTVAIAADGTVSSIPTNGIPNAVNVLGRIKLVNPDEKNLKRGDDGLF 180 + GD GPITIPPD V I DGTVSS+ + P ++GRIKLVNP E+ + RGDD LF Sbjct: 121 IVGDSGPITIPPDVNVTIGKDGTVSSVESGSKPGQAVIIGRIKLVNPPEETMTRGDDTLF 180 Query: 181 RTIT-GAAQPDANVRLASGAVEGSNVNVVEAMVNMINLSRQFEMNMKVIQTAESDSTKAT 239 R T G + D NV LA GA+E SNVNVV+AMVNMI+LSRQFEM+M +++ AE++STKA Sbjct: 181 RVKTPGGVEADPNVTLAEGALESSNVNVVDAMVNMISLSRQFEMHMSLLKNAETNSTKAA 240 Query: 240 TILSL 244 IL+L Sbjct: 241 QILAL 245 >ref|YP_004039220.1| flagellar basal-body rod protein flgf [Methylovorus sp. MP688] gb|ADQ83984.1| flagellar basal-body rod protein FlgF [Methylovorus sp. MP688] Length = 246 Score = 289 bits (740), Expect = 2e-76, Method: Composition-based stats. Identities = 157/245 (64%), Positives = 199/245 (81%), Gaps = 1/245 (0%) Query: 1 MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPVVGQGLPTRAFVVDS 60 MDR++YTAMSGAKH LEQQA+ ++NLANAT+TGF+AQ+++FR+ P+V +GLPTRAFV+D+ Sbjct: 1 MDRMIYTAMSGAKHILEQQATTAHNLANATSTGFKAQVDSFRAVPIVSEGLPTRAFVIDT 60 Query: 61 TAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQNGQS 120 T DF+ G I T R LD+AIQGRGWIAVQ DG EAYTRNGS K+NENGILQT +G + Sbjct: 61 TVATDFTPGTIIGTSRDLDIAIQGRGWIAVQRLDGSEAYTRNGSLKVNENGILQTADGLT 120 Query: 121 VQGDGGPITIPPDTTVAIAADGTVSSIPTNGIPNAVNVLGRIKLVNPDEKNLKRGDDGLF 180 V GDGGPITIPPD +AI DGTVS++ +P+ N++GRIKLVNPDE L RG DGLF Sbjct: 121 VLGDGGPITIPPDERIAIGKDGTVSTVSRVTVPSPTNIVGRIKLVNPDESTLVRGTDGLF 180 Query: 181 RTITG-AAQPDANVRLASGAVEGSNVNVVEAMVNMINLSRQFEMNMKVIQTAESDSTKAT 239 T G AQ DAN+++ASGA+EGSNVNVV+AMVNMI+L+RQFE MK+++ AE+++ KA+ Sbjct: 181 STQNGQPAQADANIQVASGALEGSNVNVVDAMVNMISLARQFETQMKLLENAENNANKAS 240 Query: 240 TILSL 244 + SL Sbjct: 241 QLFSL 245 >ref|YP_003050550.1| flagellar basal-body rod protein FlgF [Methylovorus glucosetrophus SIP3-4] gb|ACT50023.1| flagellar basal-body rod protein FlgF [Methylovorus glucosetrophus SIP3-4] Length = 246 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 157/245 (64%), Positives = 199/245 (81%), Gaps = 1/245 (0%) Query: 1 MDRLVYTAMSGAKHTLEQQASASNNLANATTTGFRAQLNTFRSAPVVGQGLPTRAFVVDS 60 MDR++YTAMSGAKH LEQQA+ ++NLANAT+TGF+AQ+++FR+ P+V +GLPTRAFV+D+ Sbjct: 1 MDRMIYTAMSGAKHILEQQATTAHNLANATSTGFKAQVDSFRAVPIVSEGLPTRAFVIDT 60 Query: 61 TAGNDFSQGPIQDTGRALDVAIQGRGWIAVQTADGGEAYTRNGSFKINENGILQTQNGQS 120 T DF+ G I T R LD+AIQGRGWIAVQ DG EAYTRNGS K+NENGILQT +G + Sbjct: 61 TVATDFTPGTIIGTSRDLDIAIQGRGWIAVQRLDGSEAYTRNGSLKVNENGILQTADGLT 120 Query: 121 VQGDGGPITIPPDTTVAIAADGTVSSIPTNGIPNAVNVLGRIKLVNPDEKNLKRGDDGLF 180 V GDGGPITIPPD +AI DGTVS++ +P+ N++GRIKLVNPDE L RG DGLF Sbjct: 121 VLGDGGPITIPPDERIAIGRDGTVSTVSRVTVPSPTNIVGRIKLVNPDESTLVRGTDGLF 180 Query: 181 RTITG-AAQPDANVRLASGAVEGSNVNVVEAMVNMINLSRQFEMNMKVIQTAESDSTKAT 239 T G AQ DAN+++ASGA+EGSNVNVV+AMVNMI+L+RQFE MK+++ AE+++ KA+ Sbjct: 181 STQNGQPAQADANIQVASGALEGSNVNVVDAMVNMISLARQFETQMKLLENAENNANKAS 240 Query: 240 TILSL 244 + SL Sbjct: 241 QLFSL 245