BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1371.p (426 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775444.1| flagellar basal-body rod protein FlgE [Herba... 522 e-146 ref|YP_003776925.1| flagellar hook protein [Herbaspirillum serop... 500 e-139 ref|ZP_08272755.1| Flagellar hook protein flgE [Oxalobacteraceae... 333 4e-89 ref|YP_546065.1| flagellar hook protein FlgE [Methylobacillus fl... 325 7e-87 ref|YP_315392.1| flagellar hook protein FlgE [Thiobacillus denit... 324 2e-86 >ref|YP_003775444.1| flagellar basal-body rod protein FlgE [Herbaspirillum seropedicae SmR1] gb|ADJ63536.1| flagellar basal-body rod FlgE protein [Herbaspirillum seropedicae SmR1] Length = 432 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 346/432 (80%), Positives = 378/432 (87%), Gaps = 6/432 (1%) Query: 1 MSFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQTQFADMYANSMNRSGNSPVGIGVT 60 M FQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQ QFADMYANSMNRSGNSPVGIGV+ Sbjct: 1 MGFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQAQFADMYANSMNRSGNSPVGIGVS 60 Query: 61 VANVAQQFTQGNITSSNNPLDIAINGDGFFQLAASSSDLSPMYGRNGQFQLDKNGYIVNP 120 V VAQQFTQGNI+SSNNPLDIAINGDGFFQL+AS ++ SPMYGRNGQFQLDK+GYIVNP Sbjct: 61 VPAVAQQFTQGNISSSNNPLDIAINGDGFFQLSASLTNKSPMYGRNGQFQLDKSGYIVNP 120 Query: 121 SMNGAFLMGYAAGVTGGDPVRLQIDTSSIPATTTTTINTKVNLDSRVTVPTTTTFSATDP 180 SMNGA+LMG+AAG GGDPV LQIDTSSIPAT TTTI+TKVNLDSR++VPTTT F+A DP Sbjct: 121 SMNGAYLMGWAAGAQGGDPVPLQIDTSSIPATPTTTISTKVNLDSRLSVPTTTPFNAADP 180 Query: 181 TSYNNSTGVTIYDSLGNPYSVQTFYVKNTPTGTPPTTTWDVYATVDGKTLTTTSGGTTPL 240 TSYN+STGV +YDSLGNPYS+QT+YVK PTGTPPTTTW VYA +D TL + P+ Sbjct: 181 TSYNSSTGVDLYDSLGNPYSMQTYYVKAAPTGTPPTTTWTVYAKIDNTTLNNGATPAVPV 240 Query: 241 KLGSMVFDSTGTLTSGGAMTIDLR------STGTNPGIAKAGGNFASTIALSYTGSTQTG 294 LG+M FDSTGT+T I ST +AKAGG FA+ I +SY+GSTQTG Sbjct: 241 ALGTMTFDSTGTMTQINGAAISPTNNTLTISTAQLATVAKAGGVFAAPINISYSGSTQTG 300 Query: 295 SAFVNLAQSQNGMPPGTLSSFSIDKDGTIVGSYSNQQTKNLGSVVLVNFANPNGLQPLGN 354 SAFVNLAQ QNGMPPG+LSSFS+DKDG+I+GSYSNQQTKNLG+VVLVNFANPNGLQPLGN Sbjct: 301 SAFVNLAQVQNGMPPGSLSSFSVDKDGSIIGSYSNQQTKNLGTVVLVNFANPNGLQPLGN 360 Query: 355 NLYSATAAAGSPLVGKPTTGTFGTLQARAVEDSNVDLTAELVNMIVAQRVYQANSQTIKV 414 NLY A++AAGSPLVGKPTTGTFGTLQARA EDSNVDLTAELVNMIVAQRVYQANSQTIKV Sbjct: 361 NLYQASSAAGSPLVGKPTTGTFGTLQARAKEDSNVDLTAELVNMIVAQRVYQANSQTIKV 420 Query: 415 QDTVLQTLVSLR 426 QDTVLQTLVSLR Sbjct: 421 QDTVLQTLVSLR 432 >ref|YP_003776925.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] gb|ADJ65017.1| flagellar hook protein [Herbaspirillum seropedicae SmR1] Length = 420 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 308/426 (72%), Positives = 356/426 (83%), Gaps = 6/426 (1%) Query: 1 MSFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQTQFADMYANSMNRSGNSPVGIGVT 60 MSFQQGLSGL+GA+K LDVIGNNVANASTVGFKQ Q QFAD YANSMNRSGNSPVGIGVT Sbjct: 1 MSFQQGLSGLHGASKHLDVIGNNVANASTVGFKQGQVQFADAYANSMNRSGNSPVGIGVT 60 Query: 61 VANVAQQFTQGNITSSNNPLDIAINGDGFFQLAASSSDLSPMYGRNGQFQLDKNGYIVNP 120 VANV+Q FTQGNI ++NN LD+AINGDGFF++AAS +D SP YGRNGQFQL+K+GY++NP Sbjct: 61 VANVSQAFTQGNIATTNNALDVAINGDGFFRMAASLTDQSPRYGRNGQFQLNKDGYLINP 120 Query: 121 SMNGAFLMGYAAGVTGGDPVRLQIDTSSIPATTTTTINTKVNLDSRVTVPTTTTFSATDP 180 SMNGA+L GY AG GGDPV L+IDT+++PAT TT ++TKVNLDSR +VPT + F +P Sbjct: 121 SMNGAYLTGYPAGTNGGDPVPLKIDTATLPATATTRVSTKVNLDSRKSVPTVSPFDPANP 180 Query: 181 TSYNNSTGVTIYDSLGNPYSVQTFYVKNTPTGTPPTTTWDVYATVDGKTLTTTSGGTTPL 240 SY+NSTG T+YDSLGNPYS+QTFYVK TGTPP+TTW VYAT+DGKT+ T P Sbjct: 181 NSYSNSTGATVYDSLGNPYSLQTFYVKGAATGTPPSTTWSVYATLDGKTIINAPPATGPQ 240 Query: 241 KLGSMVFDSTGTLTSGGAMTIDLRSTGTNPGIAKAGGNFASTIALSYTGSTQTGSAFVNL 300 LG++ FD+TG LT+ M+++L + +AK G F IAL Y GSTQTGSAF NL Sbjct: 241 LLGTLRFDATGALTASTGMSLNLST------LAKGGATFPGPIALGYAGSTQTGSAFANL 294 Query: 301 AQSQNGMPPGTLSSFSIDKDGTIVGSYSNQQTKNLGSVVLVNFANPNGLQPLGNNLYSAT 360 AQSQ+GMPPGTLSSFSI KDG+I+G+YSNQQT+ +G +VLVNFANP+GLQP+GNNLY A+ Sbjct: 295 AQSQDGMPPGTLSSFSIGKDGSIIGAYSNQQTRVMGQIVLVNFANPHGLQPIGNNLYQAS 354 Query: 361 AAAGSPLVGKPTTGTFGTLQARAVEDSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQ 420 AAGS LVG PTTG FG LQ RAVE SNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQ Sbjct: 355 EAAGSALVGTPTTGAFGALQGRAVEQSNVDLTAELVNMIVAQRVYQANSQTIKVQDTVLQ 414 Query: 421 TLVSLR 426 TLVSLR Sbjct: 415 TLVSLR 420 >ref|ZP_08272755.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] gb|EGF33754.1| Flagellar hook protein flgE [Oxalobacteraceae bacterium IMCC9480] Length = 407 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 242/430 (56%), Positives = 295/430 (68%), Gaps = 27/430 (6%) Query: 1 MSFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQTQFADMYANSMNRSGNSPVGIGVT 60 M FQQGLSGLN A+KSL+V GNNVAN+STVGFK +Q QFAD+YA+S+ G S VGIG + Sbjct: 1 MGFQQGLSGLNAASKSLEVTGNNVANSSTVGFKSAQAQFADVYASSLTGGGASQVGIGTS 60 Query: 61 VANVAQQFTQGNITSSNNPLDIAINGDGFFQLAASSSDLSPMYGRNGQFQLDKNGYIVNP 120 VA VAQQFTQGN+T+SNNPLD+AING GFF+L+ + Y RNGQFQLDKNG IVN Sbjct: 61 VATVAQQFTQGNVTASNNPLDLAINGGGFFRLSTGGA---ITYSRNGQFQLDKNGGIVNS 117 Query: 121 SMNGAFLMGYAAGVTG----GDPVRLQIDTSSIPATTTTTINTKVNLDSRVTVPTTTTFS 176 NGA L G+ TG G P L I+T+ + TT+ + VNLDSR T P TTTFS Sbjct: 118 --NGAHLTGFGVSATGVLATGTPSNLVINTADLAPKTTSEVKLLVNLDSRETTPKTTTFS 175 Query: 177 ATDPTSYNNSTGVTIYDSLGNPYSVQTFYVKNTPTGTPPTTTWDVYATVDGKTLTTTSGG 236 ATDPTSYN ST V+++DSLGN + +Q+++V+ +PT + TWDVY T DG +LT Sbjct: 176 ATDPTSYNRSTSVSVFDSLGNSHVLQSYFVRTSPTAS----TWDVYGTADGASLT----- 226 Query: 237 TTPLKLGSMVFDSTGTLTSGGAMTIDLRSTGTNPGIAKAGGNFASTIALSYTGSTQTGSA 296 P +GS+ F++ G LT+ + L +T T G A T+ TG+TQ GS Sbjct: 227 --PALIGSLSFNTDGGLTTAQPFSATLPTTVTP-------GASALTLKFDLTGTTQFGST 277 Query: 297 FVNLAQSQNGMPPGTLSSFSIDKDGTIVGSYSNQQTKNLGSVVLVNFANPNGLQPLGNNL 356 F QSQ+G G LS F+ DG I G Y+N ++ LG VVL NF NPNGLQ LGNN+ Sbjct: 278 FGLNTQSQDGYTSGKLSGFATGADGVITGRYTNGKSATLGQVVLSNFTNPNGLQNLGNNV 337 Query: 357 YSATAAAGSPLVGKPTTGTFGTLQARAVEDSNVDLTAELVNMIVAQRVYQANSQTIKVQD 416 +S TAA+G PLVG P +G G LQ+ AVEDSNVDLTAELVNMI AQR YQAN+QTIK QD Sbjct: 338 WSETAASGGPLVGTPNSGNLGVLQSSAVEDSNVDLTAELVNMITAQRFYQANAQTIKTQD 397 Query: 417 TVLQTLVSLR 426 VLQTLV+LR Sbjct: 398 QVLQTLVNLR 407 >ref|YP_546065.1| flagellar hook protein FlgE [Methylobacillus flagellatus KT] gb|ABE50224.1| protein of unknown function DUF1078-like protein [Methylobacillus flagellatus KT] Length = 410 Score = 325 bits (834), Expect = 7e-87, Method: Composition-based stats. Identities = 217/432 (50%), Positives = 286/432 (66%), Gaps = 28/432 (6%) Query: 1 MSFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQTQFADMYANSMNRSGNSPVGIGVT 60 M+FQQGLSGLN A+K+++VIGNNVANASTVGFKQS+T+FAD+YANS+ S +GIG Sbjct: 1 MAFQQGLSGLNAASKNIEVIGNNVANASTVGFKQSRTEFADVYANSLGGGNASKIGIGTK 60 Query: 61 VANVAQQFTQGNITSSNNPLDIAINGDGFFQLAASSSDLSPMYGRNGQFQLDKNGYIVNP 120 +A + QQFTQGNI++S NPLD+AING+GFF++ S + + Y RNGQFQLDK+GYI N Sbjct: 61 IAAITQQFTQGNISNSQNPLDVAINGNGFFRM---SDNGAITYSRNGQFQLDKDGYIQNA 117 Query: 121 SMNGAFLMGYAAG---VTGGDPVRLQIDTSSIPATTTTTINTKVNLDSRVTVPTTTTFSA 177 + G L GYA + G L+ID + +P TTT+I +NLDSR + F Sbjct: 118 A--GQRLTGYALANGQIQTGALTELRIDAADMPPRTTTSITGPLNLDSRAEILDPANFDI 175 Query: 178 TDPTSYNNSTGVTIYDSLGNPYSVQTFYVKNTPTGTP-PTTTWDVYATVDGKTLTTTSGG 236 DP+SYN+ST + ++DSLGN +SVQ +Y+K+ T P TTTW V A+ +G L Sbjct: 176 DDPSSYNHSTPIEVFDSLGNSHSVQLYYLKSGITTAPNATTTWTVMASANGSQLM----- 230 Query: 237 TTPLKLGSMVFDSTGT--LTSGGAMTIDLRSTGTNPGIAKAGGNFASTIALSYTGSTQTG 294 P +G+MVFD +G + ++I L S G P ++ L+ TGSTQ Sbjct: 231 --PNPIGTMVFDGSGIDPAITLAPLSIPLSSGGLTP----------MSVTLNLTGSTQFA 278 Query: 295 SAFVNLAQSQNGMPPGTLSSFSIDKDGTIVGSYSNQQTKNLGSVVLVNFANPNGLQPLGN 354 + F Q+G G LSSFSI DG+I+G YSN ++ LG V L NF N NGLQPLG+ Sbjct: 279 NTFNESDLGQDGYGAGRLSSFSIGADGSILGRYSNGRSSVLGQVALANFRNLNGLQPLGD 338 Query: 355 NLYSATAAAGSPLVGKPTTGTFGTLQARAVEDSNVDLTAELVNMIVAQRVYQANSQTIKV 414 N ++ T+ +G P+VG +G G LQ+ +EDSNVDLTAELVNMI AQRVYQAN+QTIK Sbjct: 339 NQWAETSESGPPIVGVANSGGLGVLQSYRLEDSNVDLTAELVNMITAQRVYQANAQTIKT 398 Query: 415 QDTVLQTLVSLR 426 +D ++QTLV+LR Sbjct: 399 EDQIMQTLVNLR 410 >ref|YP_315392.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] gb|AAZ97587.1| flagellar hook protein FlgE [Thiobacillus denitrificans ATCC 25259] Length = 405 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 240/431 (55%), Positives = 294/431 (68%), Gaps = 31/431 (7%) Query: 1 MSFQQGLSGLNGAAKSLDVIGNNVANASTVGFKQSQTQFADMYANSMNRSGNSPVGIGVT 60 MSFQQGLSGLN AAK+LDVIGNNV+NASTVGFKQSQ QFAD+YANS+ +G S +GIGV Sbjct: 1 MSFQQGLSGLNAAAKNLDVIGNNVSNASTVGFKQSQAQFADVYANSLTGAGGSSIGIGVK 60 Query: 61 VANVAQQFTQGNITSSNNPLDIAINGDGFFQLAASSSDLSPMYGRNGQFQLDKNGYIVNP 120 VA VAQQFTQGNITS+NNPLD+AING GFF++ Y RNGQFQLDKNGYIVNP Sbjct: 61 VAQVAQQFTQGNITSTNNPLDMAINGGGFFRMDNGGE---IAYQRNGQFQLDKNGYIVNP 117 Query: 121 SMNGAFLMGYAAGVTG----GDPVRLQIDTSSIPATTTTTINTKVNLDSRVTVPTTTTFS 176 + G L GY A +G G P L I+T+ + T+ +N +NLDS T +F Sbjct: 118 T--GGKLTGYTANASGVLSTGAPAPLAINTADLTPQATSEVNAVLNLDSTGTALPAASFD 175 Query: 177 ATDPTSYNNSTGVTIYDSLGNPYSVQTFYVKNTPTGTPPTTTWDVYATVDGKTLTTTSGG 236 DPT+Y++ST ++YDSLGN +++QT+YVK TW+VYA DG T Sbjct: 176 MNDPTTYHSSTAASVYDSLGNQHTLQTYYVKTA------AGTWNVYAASDG---TPIPAA 226 Query: 237 TTPLKLGSMVFDSTGTLTSGGAMTIDLR-STGTNPGIAKAGGNFASTIALSYTGSTQTGS 295 TP+ ++ F+ +G LT GG T+ +TG NP T A +TG+TQ GS Sbjct: 227 GTPVS--TLTFNGSGALTGGGQFTVTAPVTTGANP----------ITAAFDFTGTTQFGS 274 Query: 296 AFVNLAQSQNGMPPGTLSSFSIDKDGTIVGSYSNQQTKNLGSVVLVNFANPNGLQPLGNN 355 AF +Q+G G L+ F+I DGTI+G Y+N Q+ LG VVL NFANPNGLQ +GNN Sbjct: 275 AFSVNTLNQDGYTSGRLAGFNIGADGTILGRYTNGQSAVLGQVVLANFANPNGLQQMGNN 334 Query: 356 LYSATAAAGSPLVGKPTTGTFGTLQARAVEDSNVDLTAELVNMIVAQRVYQANSQTIKVQ 415 L++ TA +G+PLVG P +G G LQ+ AVEDSNVDLTAELVNMI AQRVYQAN+QTIK Q Sbjct: 335 LWTETATSGTPLVGTPDSGGLGVLQSSAVEDSNVDLTAELVNMITAQRVYQANAQTIKSQ 394 Query: 416 DTVLQTLVSLR 426 D VLQTLV+LR Sbjct: 395 DAVLQTLVNLR 405