BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1370.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775443.1| flagellar basal-body rod modification protei... 233 2e-59 ref|YP_001100173.1| flagellar basal body rod modification protei... 164 1e-38 ref|ZP_08272754.1| Flagellar basal-body rod modification protein... 152 3e-35 ref|YP_004039222.1| flagellar hook capping protein [Methylovorus... 144 1e-32 ref|YP_003050552.1| flagellar hook capping protein [Methylovorus... 142 3e-32 >ref|YP_003775443.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] gb|ADJ63535.1| flagellar basal-body rod modification protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats. Identities = 191/241 (79%), Positives = 222/241 (92%), Gaps = 1/241 (0%) Query: 1 MAIVSSDLLTAMNGTSSSSSTTTSSSSLDNNSPDAIQNRFLTLLIAQMKNQDPSNPMDNS 60 MA VS+DLLTAMN +SSSS+T++SS L +NSPDAIQNRFLTLL+AQMKNQDP+NPMDNS Sbjct: 1 MATVSNDLLTAMN-GTSSSSSTSNSSGLTDNSPDAIQNRFLTLLMAQMKNQDPNNPMDNS 59 Query: 61 QLTTQMAQLSTVSGISQLNNSLSTLMSNLNSSQALSTANMIGHSVLAPGNSIQLTSDTTK 120 QLT+QMAQLSTVSGISQLN++L+TLM NLNSSQALS+ANMIGHSVLAPGNS+QLTS+TTK Sbjct: 60 QLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALSSANMIGHSVLAPGNSVQLTSETTK 119 Query: 121 DASGTETTSQKAVFGVNLSGTASSVVVTIKDSSGAVVHTTDLGTQAAGVVPVIWDGSNDT 180 DASG + T Q AV GVNL+ ASSVVVT+KDS+GAVV T DLGTQA+GVVPVIWDG+ND Sbjct: 120 DASGNDVTKQHAVMGVNLATNASSVVVTVKDSTGAVVRTMDLGTQASGVVPVIWDGTNDA 179 Query: 181 GGKVADGNYTFTVSASNNGTAVSASTLSFGTVSSVSTASDGVKLNVTNVGTIKPTDVVQI 240 G K ADGNYTF+V+ASNNGTAV+A+ L+FGTV+SVSTA+DG+KLNV+N+GTIKPTDVVQI Sbjct: 180 GSKAADGNYTFSVAASNNGTAVNATALAFGTVASVSTAADGIKLNVSNIGTIKPTDVVQI 239 Query: 241 L 241 L Sbjct: 240 L 240 >ref|YP_001100173.1| flagellar basal body rod modification protein [Herminiimonas arsenicoxydans] emb|CAL62049.1| Basal-body rod modification protein FlgD [Herminiimonas arsenicoxydans] Length = 225 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 107/239 (44%), Positives = 150/239 (62%), Gaps = 23/239 (9%) Query: 3 IVSSDLLTAMNGTSSSSSTTTSSSSLDNNSPDAIQNRFLTLLIAQMKNQDPSNPMDNSQL 62 ++ LL MNGTS++ +T + Q+RFLTLL+ QMKNQDP NP+DN+Q+ Sbjct: 10 VLPQALLDQMNGTSAAKKSTAEEA----------QDRFLTLLVTQMKNQDPLNPLDNAQV 59 Query: 63 TTQMAQLSTVSGISQLNNSLSTLMSNLNSSQALSTANMIGHSVLAPGNSIQLTSDTTKDA 122 T+Q+AQLSTV+GI +LN +L ++M + S+QAL ANMIGH VLAPG++I LT + Sbjct: 60 TSQLAQLSTVTGIDKLNGTLESMMGSYQSNQALQAANMIGHGVLAPGSNISLTEN----- 114 Query: 123 SGTETTSQKAVFGVNLSGTASSVVVTIKDSSGAVVHTTDLGTQAAGVVPVIWDGSNDTGG 182 K + GV + + +KD++G V+HT DLG AG VP++WDG+ G Sbjct: 115 --------KGLMGVEFPQDVDAAEILVKDAAGNVIHTIDLGAHPAGTVPLLWDGTLADGS 166 Query: 183 KVADGNYTFTVSASNNGTAVSASTLSFGTVSSVSTASDGVKLNVTNVGTIKPTDVVQIL 241 K DG+Y F V AS G VSA+ L FG V++VST+ GV++NV +G + D+ QIL Sbjct: 167 KAEDGSYQFEVKASLAGKPVSANALQFGIVTTVSTSPGGVQINVPGLGALNLADIRQIL 225 >ref|ZP_08272754.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] gb|EGF33753.1| Flagellar basal-body rod modification protein FlgD [Oxalobacteraceae bacterium IMCC9480] Length = 224 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 107/205 (52%), Positives = 140/205 (68%), Gaps = 13/205 (6%) Query: 37 QNRFLTLLIAQMKNQDPSNPMDNSQLTTQMAQLSTVSGISQLNNSLSTLMSNLNSSQALS 96 Q+RF+ LL+ QMKNQDP NP+DN+Q+T+Q+AQLSTVSGI ++N +L +++++ S A+ Sbjct: 33 QDRFMKLLVTQMKNQDPLNPLDNAQVTSQLAQLSTVSGIDKMNTTLESMIASQQSGSAVQ 92 Query: 97 TANMIGHSVLAPGNSIQLTSDTTKDASGTETTSQKAVFGVNLSGTASSVVVTIKDSSGAV 156 A MIGH VLAPG + L S AVFGV+L+ +A V VT++D +G Sbjct: 93 AAGMIGHGVLAPGKQMALASGN-------------AVFGVDLAASAEKVKVTVRDVNGVA 139 Query: 157 VHTTDLGTQAAGVVPVIWDGSNDTGGKVADGNYTFTVSASNNGTAVSASTLSFGTVSSVS 216 VHT DLG + AG + + WDG D G K ADG YTF V+AS VSA+ L+FG VSSVS Sbjct: 140 VHTIDLGAKDAGTLALAWDGVKDDGSKAADGTYTFDVAASAGTAPVSATALAFGQVSSVS 199 Query: 217 TASDGVKLNVTNVGTIKPTDVVQIL 241 T++ GVKLNVTN+G I TDV QIL Sbjct: 200 TSATGVKLNVTNLGAIGMTDVRQIL 224 >ref|YP_004039222.1| flagellar hook capping protein [Methylovorus sp. MP688] gb|ADQ83986.1| flagellar hook capping protein [Methylovorus sp. MP688] Length = 218 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 110/241 (45%), Positives = 152/241 (63%), Gaps = 23/241 (9%) Query: 1 MAIVSSDLLTAMNGTSSSSSTTTSSSSLDNNSPDAIQNRFLTLLIAQMKNQDPSNPMDNS 60 M +S+DLLT MN SSS ++ S +Q+RF+TLLI QMK+QDP NPMDN+ Sbjct: 1 MTTISNDLLTTMNTRKSSSGSSASD----------VQDRFMTLLITQMKSQDPLNPMDNA 50 Query: 61 QLTTQMAQLSTVSGISQLNNSLSTLMSNLNSSQALSTANMIGHSVLAPGNSIQLTSDTTK 120 Q+T+Q+AQLSTV+GI +LN ++ +++SN+ SSQ +NMIG VL G+S+ LT Sbjct: 51 QVTSQLAQLSTVTGIDKLNTTMESMISNVQSSQTYQASNMIGRYVLTKGDSLTLTE---- 106 Query: 121 DASGTETTSQKAVFGVNLSGTASSVVVTIKDSSGAVVHTTDLGTQAAGVVPVIWDGSNDT 180 K+ G+NL A V VTIKDS+G + LG Q AGV+P+ WDG D Sbjct: 107 ---------SKSYLGINLPVGADKVTVTIKDSAGNQMRQLTLGKQEAGVLPLSWDGYKDD 157 Query: 181 GGKVADGNYTFTVSASNNGTAVSASTLSFGTVSSVSTASDGVKLNVTNVGTIKPTDVVQI 240 G K ADGNY F V+A+ T+V+A+ LS+ V SVS +S G+KLN+ + +I DVV++ Sbjct: 158 GSKAADGNYKFEVAATTANTSVTATPLSYDQVMSVSNSSSGIKLNLGKLDSIGIDDVVEV 217 Query: 241 L 241 Sbjct: 218 F 218 >ref|YP_003050552.1| flagellar hook capping protein [Methylovorus glucosetrophus SIP3-4] gb|ACT50025.1| flagellar hook capping protein [Methylovorus glucosetrophus SIP3-4] Length = 218 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 109/241 (45%), Positives = 152/241 (63%), Gaps = 23/241 (9%) Query: 1 MAIVSSDLLTAMNGTSSSSSTTTSSSSLDNNSPDAIQNRFLTLLIAQMKNQDPSNPMDNS 60 M +S+DLLT MN S S +T + + Q+RF+TLLI QMK+QDP NPMDN+ Sbjct: 1 MTTISNDLLTTMNTRKSGSGSTAADA----------QDRFMTLLITQMKSQDPLNPMDNA 50 Query: 61 QLTTQMAQLSTVSGISQLNNSLSTLMSNLNSSQALSTANMIGHSVLAPGNSIQLTSDTTK 120 Q+T+Q+AQLSTV+GI +LN+++ +++SN+ SSQ +NMIG VL G+S+ LT Sbjct: 51 QVTSQLAQLSTVTGIDKLNSTMESMISNVQSSQTYQASNMIGRYVLTKGDSLTLTE---- 106 Query: 121 DASGTETTSQKAVFGVNLSGTASSVVVTIKDSSGAVVHTTDLGTQAAGVVPVIWDGSNDT 180 K+ G+NL A V VTIKDS+G + LG Q AGV+P+ WDG D Sbjct: 107 ---------SKSYLGINLPVGADKVTVTIKDSAGNQMRQLTLGKQEAGVLPLSWDGYKDD 157 Query: 181 GGKVADGNYTFTVSASNNGTAVSASTLSFGTVSSVSTASDGVKLNVTNVGTIKPTDVVQI 240 G K ADGNY F V+A+ T+V+A+ LS+ V SVS +S G+KLN+ + +I DVV++ Sbjct: 158 GSKAADGNYKFEVTATTANTSVTATPLSYDQVMSVSNSSSGIKLNLGKLDSIGIDDVVEV 217 Query: 241 L 241 Sbjct: 218 F 218