BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1368.p         (134 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775442.1| flagellar basal-body rod protein [Herbaspiri...   203   6e-51
ref|YP_003523193.1| flagellar basal-body rod protein FlgC [Sider...   166   2e-39
ref|YP_546063.1| flagellar basal-body rod protein FlgC [Methylob...   163   8e-39
ref|YP_003846838.1| flagellar basal-body rod protein FlgC [Galli...   161   4e-38
ref|YP_003674663.1| flagellar basal-body rod protein FlgC [Methy...   159   1e-37

>ref|YP_003775442.1| flagellar basal-body rod protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63534.1| Flagellar basal-body rod protein [Herbaspirillum seropedicae SmR1]
          Length = 134

 Score =  203 bits (517), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 129/134 (96%), Positives = 133/134 (99%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFEAIPVGSVKDS 60
           MSLSNIFNVAGSAMSAQ+QRLNATASNIANADSATSPDGTPYKAKQVVF+AIPVG VKDS
Sbjct: 1   MSLSNIFNVAGSAMSAQSQRLNATASNIANADSATSPDGTPYKAKQVVFQAIPVGGVKDS 60

Query: 61  GVKVAAVVENQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETMN 120
           GVKVAAVVE+QAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASR+YQTNVETMN
Sbjct: 61  GVKVAAVVEDQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRAYQTNVETMN 120

Query: 121 TAKAMLVKTLTIGQ 134
           TAKAMLVKTLTIGQ
Sbjct: 121 TAKAMLVKTLTIGQ 134


>ref|YP_003523193.1| flagellar basal-body rod protein FlgC [Sideroxydans lithotrophicus
           ES-1]
 gb|ADE10806.1| flagellar basal-body rod protein FlgC [Sideroxydans lithotrophicus
           ES-1]
          Length = 134

 Score =  166 bits (419), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 96/134 (71%), Positives = 111/134 (82%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFEAIPVGSVKDS 60
           MSL NIFN+AGSAM+AQ+QRLN  ASN+AN DSAT PDG PYKAKQVVF  +P+      
Sbjct: 1   MSLFNIFNIAGSAMTAQSQRLNVVASNLANVDSATGPDGKPYKAKQVVFSTVPITGQVGE 60

Query: 61  GVKVAAVVENQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETMN 120
           GVKVAAVVE+ +P K VYDPK+P+ADG GYV MPNVNPV+EMVNMISASRSYQ NV+ +N
Sbjct: 61  GVKVAAVVEDNSPMKTVYDPKNPLADGQGYVTMPNVNPVDEMVNMISASRSYQNNVDVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T+K +L KTLTIGQ
Sbjct: 121 TSKTLLTKTLTIGQ 134


>ref|YP_546063.1| flagellar basal-body rod protein FlgC [Methylobacillus flagellatus
           KT]
 gb|ABE50222.1| flagellar basal-body rod protein FlgC [Methylobacillus flagellatus
           KT]
          Length = 135

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 97/135 (71%), Positives = 113/135 (83%), Gaps = 1/135 (0%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFEAIPVGSVKDS 60
           MSL N+FN++GSAMSAQ QRLN  ASN+ANADS TS +G PY+ K +VF A+PV +  D+
Sbjct: 1   MSLFNVFNISGSAMSAQGQRLNVVASNLANADSVTSSNGQPYRTKHIVFSAVPVNAKGDA 60

Query: 61  -GVKVAAVVENQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETM 119
            GVKV  +VE+QAPP+L YDPKHP+AD NGYVAMPNVN  EEMVNMISASRSYQ NVETM
Sbjct: 61  QGVKVQQIVEDQAPPQLKYDPKHPLADANGYVAMPNVNVTEEMVNMISASRSYQNNVETM 120

Query: 120 NTAKAMLVKTLTIGQ 134
           N AK+ML+KTLTIGQ
Sbjct: 121 NAAKSMLLKTLTIGQ 135


>ref|YP_003846838.1| flagellar basal-body rod protein FlgC [Gallionella
           capsiferriformans ES-2]
 gb|ADL55074.1| flagellar basal-body rod protein FlgC [Gallionella
           capsiferriformans ES-2]
          Length = 134

 Score =  161 bits (407), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 93/134 (69%), Positives = 109/134 (81%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFEAIPVGSVKDS 60
           MSL NIFNVAGS M+AQ+QRLN  ASN+ANADS T  DG PY+AKQVVF A P+GS    
Sbjct: 1   MSLFNIFNVAGSGMAAQSQRLNVVASNLANADSTTGADGKPYRAKQVVFSATPMGSTDVQ 60

Query: 61  GVKVAAVVENQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETMN 120
           GVKV  V E+ +P K+VYDPKHPMAD  GYV+MPNVN V+EMVNMISASR+YQ NV+ +N
Sbjct: 61  GVKVVRVAEDTSPMKIVYDPKHPMADAKGYVSMPNVNVVDEMVNMISASRAYQNNVDVLN 120

Query: 121 TAKAMLVKTLTIGQ 134
           T+K +L+KTLTIGQ
Sbjct: 121 TSKTLLLKTLTIGQ 134


>ref|YP_003674663.1| flagellar basal-body rod protein FlgC [Methylotenera versatilis
           301]
 gb|ADI30086.1| flagellar basal-body rod protein FlgC [Methylotenera versatilis
           301]
          Length = 135

 Score =  159 bits (403), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 99/134 (73%), Positives = 112/134 (83%)

Query: 1   MSLSNIFNVAGSAMSAQAQRLNATASNIANADSATSPDGTPYKAKQVVFEAIPVGSVKDS 60
           MSL N+FN++GSAMSAQAQRLN  ASN+ANADSATS +GTPYKAKQVVF A P GS   S
Sbjct: 1   MSLFNVFNISGSAMSAQAQRLNTVASNLANADSATSANGTPYKAKQVVFSATPTGSPDAS 60

Query: 61  GVKVAAVVENQAPPKLVYDPKHPMADGNGYVAMPNVNPVEEMVNMISASRSYQTNVETMN 120
           GVKV  V+E+ +P K+VYDPKHP+A+  GYV MPNVN  EEMVNMISASR+YQ NVETMN
Sbjct: 61  GVKVLKVIEDNSPAKVVYDPKHPLANDKGYVTMPNVNVTEEMVNMISASRAYQNNVETMN 120

Query: 121 TAKAMLVKTLTIGQ 134
            AK ML+KTLTIGQ
Sbjct: 121 AAKTMLLKTLTIGQ 134