BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1367.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775441.1| Flagellar basal-body rod protein FlgB [Herba...   226   7e-58
ref|ZP_08272752.1| Flagellar basal-body rod protein FlgB [Oxalob...   152   1e-35
ref|YP_001353108.1| FlgB flagellar basal body protein [Janthinob...   140   6e-32
ref|YP_412016.1| flagellar basal-body rod protein FlgB [Nitrosos...   134   4e-30
ref|YP_002946078.1| flagellar basal-body rod protein FlgB [Vario...   128   2e-28

>ref|YP_003775441.1| Flagellar basal-body rod protein FlgB [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ63533.1| Flagellar basal-body rod FlgB protein [Herbaspirillum seropedicae
           SmR1]
          Length = 142

 Score =  226 bits (577), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 121/142 (85%), Positives = 134/142 (94%)

Query: 1   MVSKLDDYFRFNEMALNLRSQRQQVLASNIANADTPNYKARDVNFADALKNALDSKSNTI 60
           MVSKLDD+FRFNEMA+NLR+QRQQVLASNIANADTPNYKARDVNFADALKNALD+K+  +
Sbjct: 1   MVSKLDDFFRFNEMAMNLRAQRQQVLASNIANADTPNYKARDVNFADALKNALDNKATAM 60

Query: 61  PPLQLERTAATHVAGTAPDNGPGSIGGTALQYRTPAQGSVDGNTVDMDVERNEFLDNGIR 120
           PPL+L RTAATHV GTAP+NGPGSIGG+ L YRT  QGSVDGNTVD+DVERNEF+DNG+R
Sbjct: 61  PPLELARTAATHVPGTAPENGPGSIGGSPLLYRTVTQGSVDGNTVDLDVERNEFVDNGLR 120

Query: 121 YEAGVTSVNGQIKAMLNAIQPG 142
           YEAGVT+VNGQIKAMLNAIQPG
Sbjct: 121 YEAGVTAVNGQIKAMLNAIQPG 142


>ref|ZP_08272752.1| Flagellar basal-body rod protein FlgB [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33751.1| Flagellar basal-body rod protein FlgB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 150

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 84/149 (56%), Positives = 105/149 (70%), Gaps = 9/149 (6%)

Query: 1   MVSKLDDYFRFNEMALNLRSQRQQVLASNIANADTPNYKARDVNFADALKNAL------- 53
           M+ KLDDY RFNE ALNLR QRQQ++ASNIANADTPNYKARD++F  A+K+AL       
Sbjct: 1   MIGKLDDYLRFNETALNLRGQRQQLIASNIANADTPNYKARDIDFNSAMKSALARSGTAT 60

Query: 54  --DSKSNTIPPLQLERTAATHVAGTAPDNGPGSIGGTALQYRTPAQGSVDGNTVDMDVER 111
                +  + P +L RT+ TH++  +   G   + G  L YR   QG+VDGNTVDMD ER
Sbjct: 61  GATMATAAVQPAELARTSTTHLSAKSGHGGNSGVNGVPLLYRNIQQGAVDGNTVDMDAER 120

Query: 112 NEFLDNGIRYEAGVTSVNGQIKAMLNAIQ 140
           N F DN IRYEAG+T ++GQIK+ML+AIQ
Sbjct: 121 NAFADNAIRYEAGITMISGQIKSMLSAIQ 149


>ref|YP_001353108.1| FlgB flagellar basal body protein [Janthinobacterium sp. Marseille]
 gb|ABR88754.1| FlgB flagellar basal body protein [Janthinobacterium sp. Marseille]
          Length = 139

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 81/142 (57%), Positives = 102/142 (71%), Gaps = 7/142 (4%)

Query: 1   MVSKLDDYFRFNEMALNLRSQRQQVLASNIANADTPNYKARDVNFADALKNAL-DSKSNT 59
           M+ KLDD  RF E AL+LR QRQQ+LASNIANADTPN+KARDV+F  AL+ AL  SKS  
Sbjct: 1   MIGKLDDMLRFQETALSLRGQRQQILASNIANADTPNFKARDVDFNKALQGALARSKSGA 60

Query: 60  IPPLQLERTAATHVAG-TAPDNGPGSIGGTALQYRTPAQGSVDGNTVDMDVERNEFLDNG 118
             P +L +T+ TH++  T P     ++GG  L Y   AQG++DGNTVDMDV+RN+F DN 
Sbjct: 61  AAPAELVKTSTTHLSSKTLP-----TLGGAPLLYANTAQGNIDGNTVDMDVQRNQFTDNA 115

Query: 119 IRYEAGVTSVNGQIKAMLNAIQ 140
           +RYE G+T V+ +IK M  AIQ
Sbjct: 116 LRYEVGLTLVSSKIKGMFTAIQ 137


>ref|YP_412016.1| flagellar basal-body rod protein FlgB [Nitrosospira multiformis
           ATCC 25196]
 gb|ABB74624.1| flagellar basal-body rod protein FlgB [Nitrosospira multiformis
           ATCC 25196]
          Length = 134

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 78/140 (55%), Positives = 94/140 (67%), Gaps = 7/140 (5%)

Query: 1   MVSKLDDYFRFNEMALNLRSQRQQVLASNIANADTPNYKARDVNFADALKNALDSKSNTI 60
           M+ KLD  FRF E A NLR+ RQQ++ASNIANADTP YKARD+NF DA+++AL  K   I
Sbjct: 1   MIDKLDHAFRFYEDAANLRAHRQQLIASNIANADTPQYKARDINFKDAMESALTGKRGVI 60

Query: 61  PPLQLERTAATHVAGTAPDNGPGSIGGTALQYRTPAQGSVDGNTVDMDVERNEFLDNGIR 120
               L  +A  H+A      G G   G  L YRT  QGSVDGNTVDMDVERN+F DN + 
Sbjct: 61  ----LVTSAPNHIASP---TGAGVAAGQQLLYRTAVQGSVDGNTVDMDVERNQFADNAVH 113

Query: 121 YEAGVTSVNGQIKAMLNAIQ 140
           YEA +T ++ QI+ M  AIQ
Sbjct: 114 YEANLTFISDQIRQMRTAIQ 133


>ref|YP_002946078.1| flagellar basal-body rod protein FlgB [Variovorax paradoxus S110]
 gb|ACS20812.1| flagellar basal-body rod protein FlgB [Variovorax paradoxus S110]
          Length = 136

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/140 (51%), Positives = 95/140 (67%), Gaps = 4/140 (2%)

Query: 1   MVSKLDDYFRFNEMALNLRSQRQQVLASNIANADTPNYKARDVNFADALKNALDSKSNTI 60
           M+ KLD   RFN  ALNLR+QRQ+VLA+NIA+ADTPNYKARD +FA  L  A++      
Sbjct: 1   MIDKLDAALRFNREALNLRTQRQEVLAANIAHADTPNYKARDFDFASRLTQAVEHGRAAQ 60

Query: 61  PPLQLERTAATHVAGTAPDNGPGSIGGTALQYRTPAQGSVDGNTVDMDVERNEFLDNGIR 120
            P+Q+  T+A H+   AP + P       L YR P+Q S+DGNTV+MD ER  F DN +R
Sbjct: 61  QPVQMAATSARHIQADAPSSMPER----DLLYRVPSQASIDGNTVEMDAERINFADNALR 116

Query: 121 YEAGVTSVNGQIKAMLNAIQ 140
           YEA +T V+ +IK++L+A Q
Sbjct: 117 YEANLTVVSAKIKSLLSAAQ 136