BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1366.p (259 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775440.1| flagellar basal body P-ring formation protei... 346 2e-93 ref|YP_001353107.1| flagellar basal body P-ring biosynthesis pro... 214 8e-54 ref|YP_001100176.1| basal-body periplasmic P ring assembly prote... 213 2e-53 ref|ZP_08272751.1| Flagellar basal-body P-ring formation protein... 202 6e-50 ref|YP_003050555.1| flagella basal body P-ring formation protein... 188 7e-46 >ref|YP_003775440.1| flagellar basal body P-ring formation protein [Herbaspirillum seropedicae SmR1] gb|ADJ63532.1| flagellar basal body P-ring formation protein [Herbaspirillum seropedicae SmR1] Length = 254 Score = 346 bits (888), Expect = 2e-93, Method: Composition-based stats. Identities = 200/254 (78%), Positives = 224/254 (88%), Gaps = 1/254 (0%) Query: 7 LCPAGKLHKMKHAFRALRRTFAVLSLLAAGLGATAPALAQNDPNSPQKQDLQALQQVAEQ 66 + P KL KMKH R LR A L+LLA GL A +PA AQNDP +PQ+QDLQ +QQ AEQ Sbjct: 1 MSPWDKLLKMKHPLRVLRHACAALALLAGGLLALSPASAQNDPTAPQRQDLQIVQQTAEQ 60 Query: 67 FLKSQTSGLPGSVTVTIDPADARLTLAACLEPQAFMPNGGRLFGRTTVGIKCVAPSPWTI 126 FLK+QT+GLPGS+T+ DP D R+ L ACL+PQAFMPNG RL+GRT+VG+KCVAP+PWTI Sbjct: 61 FLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTI 120 Query: 127 YLRANVQVISDYLVAAVPLAQGQTISASDITRIRG-MSALPSGVITEESQVIGRVANMSL 185 Y+RANVQVISDYL+AAVPLAQGQTISASDI+R+RG MSALP+GVITEESQVIGRVA MSL Sbjct: 121 YVRANVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSL 180 Query: 186 RAGTPLRLDTIRNQRVVQQGQAVRVVSIGPGFQISTEARALTNANEGQMAQARTAAGQVV 245 RAGTPLR+D IRNQRVVQQGQ+VRVVS GPGFQISTEARAL+NANEGQM QARTAAGQVV Sbjct: 181 RAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVV 240 Query: 246 SGIAKAGGILEINY 259 SGIAKAGGILEINY Sbjct: 241 SGIAKAGGILEINY 254 >ref|YP_001353107.1| flagellar basal body P-ring biosynthesis protein [Janthinobacterium sp. Marseille] gb|ABR88398.1| Flagellar basal body P-ring biosynthesis protein [Janthinobacterium sp. Marseille] Length = 234 Score = 214 bits (546), Expect = 8e-54, Method: Composition-based stats. Identities = 124/245 (50%), Positives = 162/245 (66%), Gaps = 12/245 (4%) Query: 16 MKHAFRALRRTFAVLSLLAAGLGATAPALAQNDPNSPQKQDLQALQQVAEQFLKSQTSGL 75 MKH F ++ + LA A P +QDL L+Q AEQFL+ Q +GL Sbjct: 1 MKHLFHIAIAALSLSTQLAWAQAAAEP-----------RQDLAVLKQTAEQFLQMQANGL 49 Query: 76 PGSVTVTIDPADARLTLAACLEPQAFMPNGGRLFGRTTVGIKCVAPSPWTIYLRANVQVI 135 PG V VT+ D RL L C P+AF+P + +G+TTVG++C P+ WTIY+ A V+V Sbjct: 50 PGEVKVTVGAIDPRLKLPVCPVPEAFLPPSSKAWGKTTVGVRCNVPTVWTIYVSAQVRVH 109 Query: 136 SDYLVAAVPLAQGQTISASDITRIRG-MSALPSGVITEESQVIGRVANMSLRAGTPLRLD 194 +Y+ AA PLAQGQ I DI +++G ++ LPSGVIT+ SQ IGR A ++ G PLR D Sbjct: 110 GEYIAAAAPLAQGQNIGPGDIAKVKGDLTNLPSGVITDASQAIGRTAATTIALGAPLRQD 169 Query: 195 TIRNQRVVQQGQAVRVVSIGPGFQISTEARALTNANEGQMAQARTAAGQVVSGIAKAGGI 254 +RNQ+ +QQGQAVRV+ G GF +S+EARAL NANEGQ+ Q RTAAGQV+SGIAK GGI Sbjct: 170 ALRNQQAIQQGQAVRVILNGDGFSVSSEARALNNANEGQLTQVRTAAGQVISGIAKLGGI 229 Query: 255 LEINY 259 +E+ Y Sbjct: 230 VELAY 234 >ref|YP_001100176.1| basal-body periplasmic P ring assembly protein [Herminiimonas arsenicoxydans] emb|CAL62052.1| Flagella basal body P-ring formation protein FlgA precursor [Herminiimonas arsenicoxydans] Length = 235 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 123/238 (51%), Positives = 164/238 (68%), Gaps = 4/238 (1%) Query: 23 LRRTFAVLSLLAAGLGATAPALAQNDPNSPQKQDLQALQQVAEQFLKSQTSGLPGSVTVT 82 +R TF + + A L +A +QDL L+Q AEQFL++Q +GLPG V VT Sbjct: 1 MRHTF---NFVIAALALSAQCAVAQGVEPEARQDLGVLKQTAEQFLRAQAAGLPGEVRVT 57 Query: 83 IDPADARLTLAACLEPQAFMPNGGRLFGRTTVGIKCVAPSPWTIYLRANVQVISDYLVAA 142 + D R L AC+ P+AF+P + +G+T+VG++C APS WTIY++A VQV +Y+ AA Sbjct: 58 MGSIDPRTKLPACVAPEAFLPASSKAWGKTSVGLRCSAPSRWTIYVQAKVQVHGEYIAAA 117 Query: 143 VPLAQGQTISASDITRIRG-MSALPSGVITEESQVIGRVANMSLRAGTPLRLDTIRNQRV 201 PL+QGQTI DI ++G ++ LP+GVIT+ SQ IGR A ++ G PLR D +RNQ+ Sbjct: 118 APLSQGQTIGQGDIATLKGDLTTLPAGVITDASQAIGRTAATTVALGAPLRQDALRNQQA 177 Query: 202 VQQGQAVRVVSIGPGFQISTEARALTNANEGQMAQARTAAGQVVSGIAKAGGILEINY 259 +QQGQAVRVV G GF +S+EARAL NANEGQ+ Q RT AGQV+SGIAK GGI+E+ Y Sbjct: 178 IQQGQAVRVVVNGAGFSVSSEARALNNANEGQLTQVRTPAGQVISGIAKLGGIVELTY 235 >ref|ZP_08272751.1| Flagellar basal-body P-ring formation protein flgA [Oxalobacteraceae bacterium IMCC9480] gb|EGF33750.1| Flagellar basal-body P-ring formation protein flgA [Oxalobacteraceae bacterium IMCC9480] Length = 245 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 113/207 (54%), Positives = 163/207 (78%), Gaps = 1/207 (0%) Query: 54 KQDLQALQQVAEQFLKSQTSGLPGSVTVTIDPADARLTLAACLEPQAFMPNGGRLFGRTT 113 +QD ++ E+FL++Q++G PG VT+T+ DAR+ L AC P+AF+P G R++G+T+ Sbjct: 39 RQDPATIRTTVERFLRAQSAGSPGDVTITVGQLDARMNLPACPVPEAFLPAGSRVWGKTS 98 Query: 114 VGIKCVAPSPWTIYLRANVQVISDYLVAAVPLAQGQTISASDITRIRG-MSALPSGVITE 172 VG++C+APSPWT+Y+ A V+VI++Y+ +A PLAQGQ + +D+ R+RG ++ LP+G++T+ Sbjct: 99 VGVRCLAPSPWTVYVTAQVKVIAEYVASAAPLAQGQLVGPNDVIRMRGDLTVLPAGILTD 158 Query: 173 ESQVIGRVANMSLRAGTPLRLDTIRNQRVVQQGQAVRVVSIGPGFQISTEARALTNANEG 232 +Q IGR MSL G+PLR D +R Q+VVQQGQAVR+VS GPGF ++TE RAL NA EG Sbjct: 159 PAQAIGRTMAMSLGMGSPLRTDALRIQQVVQQGQAVRLVSSGPGFSVATEGRALNNAAEG 218 Query: 233 QMAQARTAAGQVVSGIAKAGGILEINY 259 Q+AQARTAAGQVVSG+A+AGG +++ Y Sbjct: 219 QIAQARTAAGQVVSGVARAGGYVDVTY 245 >ref|YP_003050555.1| flagella basal body P-ring formation protein FlgA [Methylovorus glucosetrophus SIP3-4] ref|YP_004039225.1| flagella basal body p-ring formation protein flga [Methylovorus sp. MP688] gb|ACT50028.1| flagella basal body P-ring formation protein FlgA [Methylovorus glucosetrophus SIP3-4] gb|ADQ83989.1| flagella basal body P-ring formation protein FlgA [Methylovorus sp. MP688] Length = 242 Score = 188 bits (477), Expect = 7e-46, Method: Composition-based stats. Identities = 102/224 (45%), Positives = 148/224 (66%), Gaps = 2/224 (0%) Query: 37 LGATAPALAQNDPNSPQKQDLQALQQVAEQFLKSQTSGLPGSVTVTIDPADARLTLAACL 96 L +A + A+ PN+ Q Q+L ++++ E+FL QT+G PG VTVT D L LA C Sbjct: 20 LAGSALSHAEAMPNTDQTQNLTSIRKKVEEFLTVQTAGYPGRVTVTAGAIDNNLKLAKCP 79 Query: 97 EPQAFMPNGGRLFGRTTVGIKCVAPSPWTIYLRANVQVISDYLVAAVPLAQGQTISASDI 156 + FMP G R +G+T VG++C AP+ WTIY++A V V+ YLVAA PLAQG+ + + D+ Sbjct: 80 ALEVFMPQGSRAWGKTNVGVRCNAPA-WTIYMQATVNVVGQYLVAAAPLAQGRVVDSGDL 138 Query: 157 TRIRG-MSALPSGVITEESQVIGRVANMSLRAGTPLRLDTIRNQRVVQQGQAVRVVSIGP 215 G ++ LP G+ T+ Q IGR+ N+S+ AGT LR + ++ VVQQGQ V +++ G Sbjct: 139 LFESGDLAQLPPGIFTDPEQAIGRIVNISMNAGTVLRQEMLKASPVVQQGQTVTLITRGK 198 Query: 216 GFQISTEARALTNANEGQMAQARTAAGQVVSGIAKAGGILEINY 259 GF IS E AL NA +GQ+ + + A GQVVSGIA+ GG +E+++ Sbjct: 199 GFSISAEGHALNNATDGQLVRVKVANGQVVSGIARNGGKIEVSF 242