BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1365.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775439.1| anti-sigma-28 factor protein [Herbaspirillum...   105   3e-21
ref|YP_001353106.1| negative regulator of flagellin synthesis [J...    59   2e-07

>ref|YP_003775439.1| anti-sigma-28 factor protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63531.1| anti-sigma-28 factor protein [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 87/121 (71%), Positives = 102/121 (84%), Gaps = 1/121 (0%)

Query: 3   IRQAGAKRPHPTRNTAVNVNDALKSAALNTEQTQTQTRNTTAANPAGTDPAATKAASDSV 62
           +RQAGAKRPHPTRNTAVNVNDALKSAALNTEQTQ Q RN   A     + AA+ AASDSV
Sbjct: 1   MRQAGAKRPHPTRNTAVNVNDALKSAALNTEQTQAQPRNNAQAGATAGNNAASSAASDSV 60

Query: 63  RLSSTYQALETK-DTKNGGFNAEKVEKLKAAIANGTFQIDADKIADGVIDTVKNLISARP 121
           RLS+TYQ+LETK  + +G F+A+KV ++KAAIANGTFQIDADK+A+G+IDTVK LI+AR 
Sbjct: 61  RLSATYQSLETKVSSSSGSFDAKKVAEIKAAIANGTFQIDADKVANGLIDTVKTLINARR 120

Query: 122 A 122
           A
Sbjct: 121 A 121


>ref|YP_001353106.1| negative regulator of flagellin synthesis [Janthinobacterium sp.
           Marseille]
 gb|ABR91412.1| negative regulator of flagellin synthesis [Janthinobacterium sp.
           Marseille]
          Length = 128

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/110 (42%), Positives = 65/110 (59%), Gaps = 6/110 (5%)

Query: 11  PHPTRNTAVNVNDALKSAALNTEQTQTQTRNTTAANPAGTDPAATKAASDSVRLSSTYQA 70
           P   R   V +NDA K  A       TQTR   A      + A T   S +V LSS  QA
Sbjct: 23  PQTKRGEVVKINDASKKIA-GVGVAATQTRAGKAP-----EKADTGKVSSNVTLSSQVQA 76

Query: 71  LETKDTKNGGFNAEKVEKLKAAIANGTFQIDADKIADGVIDTVKNLISAR 120
           L ++      F+A+KV+++KAAIA G FQ++A+++ADG++DTVK+LIS R
Sbjct: 77  LTSQVASASVFDAKKVDEIKAAIAGGQFQVNAERVADGLMDTVKDLISTR 126