BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1363.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775437.1| flagellar operon RNA polymerase sigma factor... 435 e-120 ref|ZP_08273913.1| RNA polymerase sigma factor for flagellar ope... 367 e-100 ref|YP_001353773.1| RNA polymerase sigma factor for flagellar op... 352 2e-95 emb|CAL61487.2| RNA polymerase sigma factor for flagellar operon... 348 3e-94 ref|YP_003048704.1| flagellar biosynthesis sigma factor [Methylo... 332 2e-89 >ref|YP_003775437.1| flagellar operon RNA polymerase sigma factor [Herbaspirillum seropedicae SmR1] gb|ADJ63529.1| RNA polymerase sigma factor for flagellar operon (sigma-F factor) protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 231/245 (94%), Positives = 241/245 (98%), Gaps = 1/245 (0%) Query: 1 MYNVKGKKGKNDVLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 MYNVKGKKGKND+LEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH Sbjct: 1 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQSLLQQLGRQPQEAEVAQH 120 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQ+LLQQLGRQP+EAE+AQH Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120 Query: 121 MKISLAEYQSLLTDCGGHQLIYYEDFHDDDGGHEHFLDRYQTGDGEDDPLQSLINGGFRE 180 M+ISL +YQSLL++CGGHQLIYYEDFHDDDGGHEHFLDR+QT D DDPLQ+LINGGFRE Sbjct: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSD-SDDPLQNLINGGFRE 179 Query: 181 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 240 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS Sbjct: 180 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 239 Query: 241 WSGVA 245 WSGVA Sbjct: 240 WSGVA 244 >ref|ZP_08273913.1| RNA polymerase sigma factor for flagellar operon [Oxalobacteraceae bacterium IMCC9480] gb|EGF32614.1| RNA polymerase sigma factor for flagellar operon [Oxalobacteraceae bacterium IMCC9480] Length = 244 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 186/245 (75%), Positives = 218/245 (88%), Gaps = 1/245 (0%) Query: 1 MYNVKGKKGKNDVLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 MY GK KN +L QHAPLVK+LAHQ+KAKLPPSVEVDDLIQAGM+GL DA+NRYE+TH Sbjct: 1 MYTPSGKSDKNHLLVQHAPLVKRLAHQMKAKLPPSVEVDDLIQAGMIGLFDAINRYEDTH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQSLLQQLGRQPQEAEVAQH 120 GAQFETYAVQRIRG+MLDELRSSDWLPRS+RQN RK+E AMQ+L Q+LGR P EAEVA+H Sbjct: 61 GAQFETYAVQRIRGSMLDELRSSDWLPRSMRQNMRKIEVAMQALQQKLGRAPLEAEVAKH 120 Query: 121 MKISLAEYQSLLTDCGGHQLIYYEDFHDDDGGHEHFLDRYQTGDGEDDPLQSLINGGFRE 180 MK+SLAEYQ+LL + GGHQL+YYEDFHD G+EHFLDRY T D D+PLQSL+N GFR+ Sbjct: 121 MKLSLAEYQNLLGEGGGHQLVYYEDFHDSSEGNEHFLDRYCT-DLSDNPLQSLLNAGFRD 179 Query: 181 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 240 AV+ +I+ALPERE+ILM LYYEQEMNLKEIGAV+GV+ESR+ QLHSQAI+RMR++LRE + Sbjct: 180 AVIRAIEALPEREKILMGLYYEQEMNLKEIGAVLGVTESRISQLHSQAIARMRAFLREKT 239 Query: 241 WSGVA 245 W+GVA Sbjct: 240 WTGVA 244 >ref|YP_001353773.1| RNA polymerase sigma factor for flagellar operon [Janthinobacterium sp. Marseille] gb|ABR88873.1| RNA polymerase sigma factor for flagellar operon [Janthinobacterium sp. Marseille] Length = 243 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 183/245 (74%), Positives = 215/245 (87%), Gaps = 2/245 (0%) Query: 1 MYNVKGKKGKNDVLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 MY GK KN ++ +HAPLVKKLAHQ+KAKLPPSVEVDDLIQAGM+GLLDAV+RYEETH Sbjct: 1 MYTAAGKSDKNHLVGEHAPLVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVSRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQSLLQQLGRQPQEAEVAQH 120 GAQFETYAVQRIRGAMLDELRSSDW+PRS+RQN RK+E AM +L Q+LGR P E+EVA+ Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWMPRSMRQNMRKIEVAMNTLQQRLGRPPNESEVAKQ 120 Query: 121 MKISLAEYQSLLTDCGGHQLIYYEDFHDDDGGHEHFLDRYQTGDGEDDPLQSLINGGFRE 180 +K+SLA+YQ LL+D GGHQL+YYEDFHD + +EHFLDRY T D DPLQ+L+N GFR Sbjct: 121 LKLSLADYQDLLSDGGGHQLVYYEDFHDSE-DNEHFLDRYCT-DESPDPLQNLMNTGFRA 178 Query: 181 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 240 AV+++I+ALPERE+ILM LYYEQEMNLKEIGAVMGV+ESRV QLHSQAI+RMR+ LRE + Sbjct: 179 AVIEAIQALPEREKILMGLYYEQEMNLKEIGAVMGVTESRVSQLHSQAIARMRANLREKA 238 Query: 241 WSGVA 245 W+GVA Sbjct: 239 WTGVA 243 >emb|CAL61487.2| RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28) [Herminiimonas arsenicoxydans] Length = 243 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 181/245 (73%), Positives = 214/245 (87%), Gaps = 2/245 (0%) Query: 1 MYNVKGKKGKNDVLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 MY G+ ++ ++ +HAPLVKKLAHQ+KAKLPPSVEVDDLIQAGM+GLLDAV RYEETH Sbjct: 1 MYTAAGRSDRDHLVSEHAPLVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVGRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQSLLQQLGRQPQEAEVAQH 120 GAQFETYAVQRIRGAMLDELRSSDW+PRS+RQN RK+E AM SL Q+LGR P E+EVA+ Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWMPRSMRQNMRKIEVAMNSLQQKLGRPPNESEVAKQ 120 Query: 121 MKISLAEYQSLLTDCGGHQLIYYEDFHDDDGGHEHFLDRYQTGDGEDDPLQSLINGGFRE 180 +K+SLA+YQ LL+D GGHQL+YYEDFHD + +EHFLDRY T D DPLQ+L+N GFR Sbjct: 121 LKLSLADYQDLLSDGGGHQLVYYEDFHDSE-DNEHFLDRYCT-DESPDPLQNLMNTGFRS 178 Query: 181 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 240 AV+ +I+ALPERE+ILM+LYYEQEMNLKEIGAVMGV+ESRV QLHSQAI+RMR+ LRE + Sbjct: 179 AVIAAIEALPEREKILMSLYYEQEMNLKEIGAVMGVTESRVSQLHSQAIARMRANLREKA 238 Query: 241 WSGVA 245 W+GVA Sbjct: 239 WTGVA 243 >ref|YP_003048704.1| flagellar biosynthesis sigma factor [Methylotenera mobilis JLW8] gb|ACT48177.1| RNA polymerase, sigma 28 subunit, FliA/WhiG [Methylotenera mobilis JLW8] Length = 244 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 173/244 (70%), Positives = 207/244 (84%), Gaps = 3/244 (1%) Query: 1 MYNVKGKKGKNDVL-EQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEET 59 MY GKK + DVL +QHA LVKKLA+QLKAKLPPSVE+DDLIQAGMMGLLDAVNRYE+T Sbjct: 1 MYTAHGKKDQKDVLLDQHAILVKKLAYQLKAKLPPSVELDDLIQAGMMGLLDAVNRYEDT 60 Query: 60 HGAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQSLLQQLGRQPQEAEVAQ 119 HGAQFETYA QRIRGAMLDELRSSDWLPRSIR+N R VE A+ L QQLG+ P E +VA+ Sbjct: 61 HGAQFETYAAQRIRGAMLDELRSSDWLPRSIRKNMRDVENAISQLEQQLGQSPTENDVAK 120 Query: 120 HMKISLAEYQSLLTDCGGHQLIYYEDFHDDDGGHEHFLDRYQTGDGEDDPLQSLINGGFR 179 + +SLAEY +L DC GHQLIYYEDFH+ D G EHFLDR+QT D ++DP++ L+ G F+ Sbjct: 121 KLNMSLAEYHEMLGDCSGHQLIYYEDFHEADSG-EHFLDRFQT-DHDNDPIKGLLIGDFK 178 Query: 180 EAVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREH 239 +A++ +I +LPERE+IL+ LYYEQE+NLKEIGAVM VSESRVCQLHSQA++R+R+ LRE Sbjct: 179 DALIGAIDSLPEREKILLGLYYEQELNLKEIGAVMSVSESRVCQLHSQAVARLRANLREK 238 Query: 240 SWSG 243 SW+G Sbjct: 239 SWTG 242