BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1362.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775436.1| antiactivator of flagellar biosynthesis FleN... 417 e-114 ref|XP_002539016.1| conserved hypothetical protein [Ricinus comm... 362 4e-98 ref|YP_001099613.1| MotR [Herminiimonas arsenicoxydans] >gi|1337... 194 1e-47 ref|XP_002538550.1| conserved hypothetical protein [Ricinus comm... 178 7e-43 ref|ZP_08273914.1| Flagellar synthesis regulator FleN [Oxalobact... 177 2e-42 >ref|YP_003775436.1| antiactivator of flagellar biosynthesis FleN protein [Herbaspirillum seropedicae SmR1] gb|ADJ63528.1| antiactivator of flagellar biosynthesis FleN protein [Herbaspirillum seropedicae SmR1] Length = 266 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 244/267 (91%), Positives = 257/267 (96%), Gaps = 1/267 (0%) Query: 1 MLERPVPRLFTFFSVLGEEEKSAMLINLAASLSQAKHSVLVVDGDVATTGLLTRIGLRHD 60 MLERPVPRLFTFFSVL EE+KSAMLINLAASL+QAKHSVLV+DGDVATTGLLTRIGLRHD Sbjct: 1 MLERPVPRLFTFFSVLAEEDKSAMLINLAASLAQAKHSVLVIDGDVATTGLLTRIGLRHD 60 Query: 61 VATLQEVARMERPMAEATRLLPEGFSMARIARRSVPSATDPHAGRLAEIFDSLIEQAEIT 120 VATLQEVARMER EATR+LPEGFSMARIARRSVPSA+DP AG+LAEIFDSLIEQAEIT Sbjct: 61 VATLQEVARMERAPREATRMLPEGFSMARIARRSVPSASDPQAGQLAEIFDSLIEQAEIT 120 Query: 121 LVNGVLARDLSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT 180 LVNGVL+ D SLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT Sbjct: 121 LVNGVLSADQSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT 180 Query: 181 EAEARTVYANMAQAASRYLAAQLNFIGAIPADDHIRRATGQGRAVMDVFPFAGAALAFQR 240 EAEARTVYANMAQAASRYLAAQLN++GAIPADDHIRRATGQGRAVMDVFPFA AALAFQR Sbjct: 181 EAEARTVYANMAQAASRYLAAQLNYLGAIPADDHIRRATGQGRAVMDVFPFATAALAFQR 240 Query: 241 LSKRFTAGPDAARSSYGMATDGASLGV 267 LSK+FTA ++ARS+YGMATDGASLGV Sbjct: 241 LSKKFTAA-ESARSTYGMATDGASLGV 266 >ref|XP_002539016.1| conserved hypothetical protein [Ricinus communis] gb|EEF23367.1| conserved hypothetical protein [Ricinus communis] Length = 230 Score = 362 bits (928), Expect = 4e-98, Method: Composition-based stats. Identities = 209/224 (93%), Positives = 218/224 (97%) Query: 1 MLERPVPRLFTFFSVLGEEEKSAMLINLAASLSQAKHSVLVVDGDVATTGLLTRIGLRHD 60 MLERPVPRLFTFFSVLGEE+KSAMLINLAASL+QAKHSVLV+DGDVATTGLLTRIGLRHD Sbjct: 7 MLERPVPRLFTFFSVLGEEDKSAMLINLAASLAQAKHSVLVIDGDVATTGLLTRIGLRHD 66 Query: 61 VATLQEVARMERPMAEATRLLPEGFSMARIARRSVPSATDPHAGRLAEIFDSLIEQAEIT 120 VATLQEVARMER EATR+LPEGFSMARIARRSVPSA+DP AG+LAEIFDSLIEQAEIT Sbjct: 67 VATLQEVARMERAPREATRMLPEGFSMARIARRSVPSASDPQAGQLAEIFDSLIEQAEIT 126 Query: 121 LVNGVLARDLSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT 180 LVNGVL+ D SLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT Sbjct: 127 LVNGVLSADQSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT 186 Query: 181 EAEARTVYANMAQAASRYLAAQLNFIGAIPADDHIRRATGQGRA 224 EAEARTVYANMAQAASRYLAAQLN++GAIPADDHIRRATGQGRA Sbjct: 187 EAEARTVYANMAQAASRYLAAQLNYLGAIPADDHIRRATGQGRA 230 >ref|YP_001099613.1| MotR [Herminiimonas arsenicoxydans] emb|CAL61486.1| putative Antiactivator of flagellar biosynthesis FleN [Herminiimonas arsenicoxydans] Length = 271 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 116/255 (45%), Positives = 166/255 (65%), Gaps = 3/255 (1%) Query: 1 MLERPVPRLFTFFSVLGEEEKSAMLINLAASLSQAKHSVLVVDGDVATTGLLTRIGLRHD 60 ML P PR+FTF S +KSAML+NL+ASL+ V+++D +T G+ R+G Sbjct: 15 MLAGPKPRIFTFLSATSVADKSAMLVNLSASLASGGSDVVLLDACTSTDGITRRMGADMQ 74 Query: 61 VATLQEVARMERPMAEATRLLPEGFSMARIARRSVPSATDP--HAGRLAEIFDSLIEQAE 118 ATL +VAR +R + + + +P+GF +A + SV +A+ RL+ F L Q++ Sbjct: 75 -ATLLDVARQQRALNQVVQAMPQGFGLASLTSGSVHAASRDADQLRRLSNAFGVLAAQSD 133 Query: 119 ITLVNGVLARDLSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVND 178 + +V+ L +D + P+P M G+IV+QV+ A+SIK AY L+K L+ ++GRRPF ++V Sbjct: 134 VLVVDAELDQDDNFPIPGMASGDIVVQVAPAAASIKEAYSLIKRLNAQLGRRPFGILVTG 193 Query: 179 ATEAEARTVYANMAQAASRYLAAQLNFIGAIPADDHIRRATGQGRAVMDVFPFAGAALAF 238 A E EA VY NMAQAASRYLA QL FIG+IP+DDH+ RA GRAV+D FP AGA++AF Sbjct: 194 ADEREAHIVYQNMAQAASRYLAVQLQFIGSIPSDDHLTRAARLGRAVIDAFPMAGASVAF 253 Query: 239 QRLSKRFTAGPDAAR 253 + L++RF AR Sbjct: 254 RLLAERFALSAHGAR 268 >ref|XP_002538550.1| conserved hypothetical protein [Ricinus communis] gb|EEF23832.1| conserved hypothetical protein [Ricinus communis] Length = 231 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 107/223 (47%), Positives = 154/223 (69%), Gaps = 4/223 (1%) Query: 24 MLINLAASLSQAKHSVLVVDGDVATTGLLTRIGLRHDVATLQEVARMERPMAEATRLLPE 83 ML+NL ASL+Q+ + V++VD G+ R+G+ + LQ VAR E + + +P+ Sbjct: 1 MLVNLGASLAQSGNDVMIVDACTRDYGVAQRLGVDRGPSLLQ-VARQECALNQVIHPVPQ 59 Query: 84 GFSMARIARRSVPSATDPHAGRLAEIFDSLIEQA-EITLVNGVLARDLSLPVPTMEMGEI 142 GFS+A +AR + SA + A RLA+ FD L++QA I +V+G + D + PVP M EI Sbjct: 60 GFSVATMARTTASSADE--ARRLAKTFDVLVKQAGSIIMVDGEFSEDGTFPVPIMASSEI 117 Query: 143 VIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDATEAEARTVYANMAQAASRYLAAQ 202 V+QVST+A+SI AY L+K LS +GRRPF ++V ATEAEA+ VY NM+ AA+RYLA Sbjct: 118 VVQVSTSATSITNAYALIKRLSQHLGRRPFGILVTGATEAEAKVVYDNMSSAATRYLAVT 177 Query: 203 LNFIGAIPADDHIRRATGQGRAVMDVFPFAGAALAFQRLSKRF 245 L+ +G++PAD+++ RA GRAV+D FP AGA++AF+RL+ RF Sbjct: 178 LSSMGSVPADEYLHRAARLGRAVVDAFPLAGASVAFRRLAGRF 220 >ref|ZP_08273914.1| Flagellar synthesis regulator FleN [Oxalobacteraceae bacterium IMCC9480] gb|EGF32615.1| Flagellar synthesis regulator FleN [Oxalobacteraceae bacterium IMCC9480] Length = 274 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 121/251 (48%), Positives = 166/251 (66%), Gaps = 5/251 (1%) Query: 1 MLERPVPRLFTFFSVLGEEEKSAMLINLAASLSQAKHSVLVVDGDVATTGLLTRIGLRHD 60 ML P PR+ +F S LG EEKS L+NLAASL++ VL++D A+ GL R+G Sbjct: 15 MLAGPKPRVVSFVSALGTEEKSGTLVNLAASLTRTGSDVLLLDACSASNGLANRLGAAR- 73 Query: 61 VATLQEVARMERPMAEATRLLPEGFSMARIAR---RSVPSATDPHAGRLAEIFDSLIEQA 117 ATL +VAR ER + E + L +GF +A +AR RSV D A RL+ F L Q Sbjct: 74 AATLMQVARQERGLNEVVQTLAQGFGVATLARENLRSVMQDVD-QARRLSNAFGVLATQH 132 Query: 118 EITLVNGVLARDLSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVN 177 +I LV+ L D S +P M+ GEIV+QVS++ SSI AAY ++K LS ++GRRPF ++V Sbjct: 133 DIVLVDAELDGDDSFVLPAMQRGEIVVQVSSSGSSITAAYAIIKRLSAQLGRRPFGILVT 192 Query: 178 DATEAEARTVYANMAQAASRYLAAQLNFIGAIPADDHIRRATGQGRAVMDVFPFAGAALA 237 A+E EA+ V+ANMAQAASRYLA +L IG++P D ++RA GR+V+D FP A A++A Sbjct: 193 GASEREAQQVFANMAQAASRYLALELTSIGSVPVDADLKRAAQLGRSVIDAFPMALASVA 252 Query: 238 FQRLSKRFTAG 248 F+RL+ +F +G Sbjct: 253 FRRLAGQFASG 263