BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1361.p (496 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775435.1| flagellar biosynthesis GTP-binding protein [... 811 0.0 ref|ZP_08273915.1| Flagellar biosynthesis protein FlhF [Oxalobac... 508 e-142 ref|YP_001353775.1| flagellar biosynthesis regulator FlhF [Janth... 466 e-129 ref|YP_001099612.1| flagellar biosynthesis regulator FlhF [Hermi... 465 e-129 ref|YP_004039245.1| GTP-binding signal recognition particle srp5... 428 e-117 >ref|YP_003775435.1| flagellar biosynthesis GTP-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ63527.1| flagellar biosynthesis GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 494 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 448/498 (89%), Positives = 460/498 (92%), Gaps = 6/498 (1%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP Sbjct: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 Query: 61 NARPQAASLQQQSGAPNAQQAKRPALLSSPLAQQPARAARPENAPLLDQPAHGRAPARPV 120 + RPQAASLQQQSG P AQQ +RPALLSSP AQ AR AR E APLLDQP R+ AR Sbjct: 61 SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQ--ARPAR-EGAPLLDQPGSERSQARAE 117 Query: 121 EAAPASDARVWRSRRAEQAAGGRPASAQQAQESGEHDQ--RPRSALPEFDGKDYDEILSE 178 A A+DARVWRSR + R A+A G+ + RPRSALPEFDGKDYDEILSE Sbjct: 118 AAP-AADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSE 176 Query: 179 VMSEIRSMRGVLETQLAEISWGGTQKRDPLKGVVLKEMLAAGFSASLSRLITENLPANSK 238 VMSEIRSMRGVLETQLAEISWGGTQKR+PLKG+VLKEMLAAGFSASLSRLITENLPANSK Sbjct: 177 VMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSK 236 Query: 239 SQDIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRHGSG 298 SQDIMFWVKSVLARNLNTLANENELLENGGVFA+VGPTGVGKTTTTAKLAARCVMRHGSG Sbjct: 237 SQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSG 296 Query: 299 KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQ 358 KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQ Sbjct: 297 KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQ 356 Query: 359 RDQMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATI 418 RDQMVAEQDAML GAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATI Sbjct: 357 RDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATI 416 Query: 419 GNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVI 478 GNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVI Sbjct: 417 GNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVI 476 Query: 479 GPTAMSMNDRGLREVSFG 496 GPTAMSMND+GLREVSFG Sbjct: 477 GPTAMSMNDKGLREVSFG 494 >ref|ZP_08273915.1| Flagellar biosynthesis protein FlhF [Oxalobacteraceae bacterium IMCC9480] gb|EGF32616.1| Flagellar biosynthesis protein FlhF [Oxalobacteraceae bacterium IMCC9480] Length = 443 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 299/496 (60%), Positives = 350/496 (70%), Gaps = 53/496 (10%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MNVKKF A+SSR+A RQVREALGPDAVILSNRNI VEILA+A+EDM++L AP ++ Sbjct: 1 MNVKKFSASSSRDALRQVREALGPDAVILSNRNINGQVEILALASEDMSSLAAPVIEKE- 59 Query: 61 NARPQAASLQQQSGAPNAQQAKRPALLSSPLAQQPARAARPENAPLLDQPAHGRAPARPV 120 +L Q P + R A R E DQ A G A A Sbjct: 60 -------TLIAQVALPAQEATVRSAFAKR----------RTEFKADTDQ-ASGLAGALE- 100 Query: 121 EAAPASDARVWRSRRAEQAAGGRPASAQQAQESGEHDQRPRSALPEFDGKDYDEILSEVM 180 ++ + DARV E AA P S L E ++E+M Sbjct: 101 QSQQSRDARV-----PEPAA-------------------PISVLRE---------MAEMM 127 Query: 181 SEIRSMRGVLETQLAEISWGGTQKRDPLKGVVLKEMLAAGFSASLSRLITENLPANSKSQ 240 +E+RSMR ++E+Q +E+SW QKR+P+K V+L+E+LAAGFSASLSR + ENLPA + Sbjct: 128 NELRSMRTMMESQFSELSWSSQQKREPVKAVILRELLAAGFSASLSRYLIENLPAGGTAA 187 Query: 241 DIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRHGSGKL 300 M W+K+V+ARN+N + +E+ +LE GGVFALVGPTGVGKTTTTAKLAARCVMRHG GKL Sbjct: 188 AGMSWIKTVMARNINAITDESAMLEQGGVFALVGPTGVGKTTTTAKLAARCVMRHGPGKL 247 Query: 301 ALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRD 360 ALI TDGYRIGGYEQLRIYGKILGVMVHSVKDE+DLRIAL+ELK KHTVLIDT GV QRD Sbjct: 248 ALIPTDGYRIGGYEQLRIYGKILGVMVHSVKDESDLRIALDELKNKHTVLIDTVGVSQRD 307 Query: 361 QMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGN 420 MV EQ AML GAG +KRLLCLNAT+TG TLNEVV AY SGLAGC++TKLDEAATIG+ Sbjct: 308 HMVTEQVAMLQGAGSRVKRLLCLNATSTGETLNEVVRAYQGSGLAGCVMTKLDEAATIGS 367 Query: 421 VLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVIGP 480 VLDVVIR KLNL YVANGQRVPEDLHVANK YL DRAFK KRE+ PF+F + ELP V+G Sbjct: 368 VLDVVIRQKLNLFYVANGQRVPEDLHVANKQYLVDRAFKLKRESKPFQFTDAELPLVMGG 427 Query: 481 TAMSMNDRGLREVSFG 496 T + ND+ LREV G Sbjct: 428 TTRASNDKSLREVHLG 443 >ref|YP_001353775.1| flagellar biosynthesis regulator FlhF [Janthinobacterium sp. Marseille] gb|ABR89179.1| FlhF flagellar biosynthesis protein [Janthinobacterium sp. Marseille] Length = 421 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 277/496 (55%), Positives = 328/496 (66%), Gaps = 75/496 (15%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MNV+KF A++SR AW VREALG PD V + A + ++A G Sbjct: 1 MNVRKFTASTSRGAWSLVREALG-----------PDAVILSNRAIDGGVEILALAG---- 45 Query: 61 NARPQAASLQQQSGAPNAQQAKRPALLSSPLAQQPARAARPENAPLLDQPAHGRAPARPV 120 + A L+ P+ + RAA E P H P++P Sbjct: 46 ---------------------EDMASLAEPMVE---RAAISETTLASLVPHH--KPSQPA 79 Query: 121 EAAPASDARVWRSRRAEQAAGGRPASAQQAQESGEHDQRPRSALPEFDGKDYDEILSEVM 180 A S+A A+ + +SA+ L+ +M Sbjct: 80 PLALTSNA-------AQSSDKVEISSAE---------------------------LNNMM 105 Query: 181 SEIRSMRGVLETQLAEISWGGTQKRDPLKGVVLKEMLAAGFSASLSRLITENLPANSKSQ 240 SEIRSMRG+LE QL+E++W QKR+P+K VL+EMLAAGFSASL+R + LPA + +Q Sbjct: 106 SEIRSMRGMLEIQLSELAWNDPQKREPVKSTVLREMLAAGFSASLARYLIARLPAGASNQ 165 Query: 241 DIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRHGSGKL 300 M W+KS+LARNL T+ +ENE+LE GGV+ALVGPTGVGKTTTTAKLAARCVMRHG KL Sbjct: 166 SGMEWIKSILARNLATIGDENEILEKGGVYALVGPTGVGKTTTTAKLAARCVMRHGPSKL 225 Query: 301 ALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRD 360 ALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE DLRIAL+ELKGKHTVLIDT GV QRD Sbjct: 226 ALITTDGYRIGGYEQLRIYGKILGVMVHSVKDEADLRIALDELKGKHTVLIDTVGVSQRD 285 Query: 361 QMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGN 420 QMVA+Q AML GAG +KRLLCLNAT+TG TLNEVV +Y GLAGCI+TKLDEAATIG+ Sbjct: 286 QMVADQIAMLTGAGDQVKRLLCLNATSTGETLNEVVRSYMGDGLAGCILTKLDEAATIGS 345 Query: 421 VLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVIGP 480 LDVVIR KLNL+YVANGQRVPEDLHVAN+ YL DRAFK KRETAPF+ + E+P V+ Sbjct: 346 ALDVVIRQKLNLYYVANGQRVPEDLHVANQQYLVDRAFKLKRETAPFQLGDAEIPAVMAN 405 Query: 481 TAMSMNDRGLREVSFG 496 T MND+ LREV G Sbjct: 406 TVRGMNDKSLREVILG 421 >ref|YP_001099612.1| flagellar biosynthesis regulator FlhF [Herminiimonas arsenicoxydans] emb|CAL61485.1| putative flagellar biosynthesis regulator FlhF [Herminiimonas arsenicoxydans] Length = 423 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 241/321 (75%), Positives = 271/321 (84%) Query: 176 LSEVMSEIRSMRGVLETQLAEISWGGTQKRDPLKGVVLKEMLAAGFSASLSRLITENLPA 235 L VMSEIRSMRG+LE QLAE++W KR+P K VL+EMLAAGFSASL+R +TE +PA Sbjct: 103 LHSVMSEIRSMRGMLEMQLAELAWTDQHKREPAKSSVLREMLAAGFSASLARYLTERMPA 162 Query: 236 NSKSQDIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRH 295 + Q M W+K++L RNL T+ NENE+LE GGV+ALVGPTGVGKTTTTAKLAARCVMRH Sbjct: 163 GASKQSGMDWIKAILTRNLATIGNENEILEKGGVYALVGPTGVGKTTTTAKLAARCVMRH 222 Query: 296 GSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAG 355 G GKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE DLRIAL+ELKGKHTVLIDT G Sbjct: 223 GPGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDEADLRIALDELKGKHTVLIDTVG 282 Query: 356 VGQRDQMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEA 415 V QRD MVAEQ AML+GAG +KRLLCLNAT+TG TLNEV +Y GLAGCI+TKLDEA Sbjct: 283 VSQRDNMVAEQIAMLSGAGSQVKRLLCLNATSTGETLNEVARSYMGDGLAGCILTKLDEA 342 Query: 416 ATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELP 475 ATIG+ LDVVIR KLNL+YVANGQRVPEDLHVAN+ YL DRAFK KRETAPF+F + E+P Sbjct: 343 ATIGSALDVVIRQKLNLYYVANGQRVPEDLHVANQQYLVDRAFKLKRETAPFQFSDAEIP 402 Query: 476 GVIGPTAMSMNDRGLREVSFG 496 V+ TA +MND+ LREV G Sbjct: 403 LVMANTAKAMNDKSLREVILG 423 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 37/54 (68%), Positives = 43/54 (79%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAP 54 MNV+KF A++SR AW VREALGPDAVILSNR + GVEILA+A EDM +L P Sbjct: 1 MNVRKFTASTSRGAWSLVREALGPDAVILSNRAVEGGVEILALAGEDMASLAEP 54 >ref|YP_004039245.1| GTP-binding signal recognition particle srp54 g- domain-containing protein [Methylovorus sp. MP688] gb|ADQ84009.1| GTP-binding signal recognition particle SRP54 G- domain protein [Methylovorus sp. MP688] Length = 451 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 262/487 (53%), Positives = 322/487 (66%), Gaps = 54/487 (11%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVA---PTGA 57 MN+K+F A+SSREA VR++LG DAVILSNR + G EILA EDM + ++ P + Sbjct: 1 MNIKRFFASSSREALAMVRKSLGEDAVILSNRAVNGGNEILAFKEEDMASFMSDDTPVQS 60 Query: 58 RDPNARPQAASLQQQSGAPNAQQAKRPALLSSPLAQQPARAARPENAPLLDQPAHGRAPA 117 A P LQ P A+QA+ P ++P A+ P RA R E AP A Sbjct: 61 SKRRAAPAMEPLQAAQARPAARQARPPVRQAAPEAE-PYRAVRTEPAP--------TTTA 111 Query: 118 RP-VEAAPASDARVWRSRRAEQAAGGRPASAQQAQESGEHDQRPRSALPEFDGKDYDEIL 176 RP V PA QAA P S +Q + Sbjct: 112 RPKVTTTPA------------QAAA--PQSNKQ--------------------------I 131 Query: 177 SEVMSEIRSMRGVLETQLAEISWGGTQKRDPLKGVVLKEMLAAGFSASLSRLITENLPAN 236 +++++EIR+MR V+E+QL EISWG Q RDP+K L +L+AGFSA+LSR I EN+P + Sbjct: 132 NDMLNEIRNMRSVIESQLVEISWGNIQHRDPVKSNTLNMLLSAGFSAALSRQIAENMPDH 191 Query: 237 SKSQDIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRHG 296 S + WV+S+L +NL + NE+E+L GGVFAL+GPTGVGKTTTTAKLAAR VM+HG Sbjct: 192 RTSAEANTWVQSILEKNLQAIPNEDEILNRGGVFALIGPTGVGKTTTTAKLAARFVMKHG 251 Query: 297 SGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGV 356 GKL LITTD YRIGG+EQLRIYGKILGVMVH+VKDE DL+IALEELKGKHT+LIDT GV Sbjct: 252 PGKLGLITTDAYRIGGHEQLRIYGKILGVMVHAVKDEADLKIALEELKGKHTILIDTVGV 311 Query: 357 GQRDQMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAA 416 Q+D+MVAEQ AML+ IK+LLCLNAT TG TL +VV AY L GCIITKLDEAA Sbjct: 312 SQKDRMVAEQIAMLSSTRQPIKKLLCLNATNTGETLTDVVRAYKVKQLDGCIITKLDEAA 371 Query: 417 TIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQ-KRETAPFEFQEGELP 475 TIG+ LDV+IR KL L+YVANGQRVPEDLHVANK L RAF+ + T+ F+F+ ELP Sbjct: 372 TIGSALDVIIREKLRLYYVANGQRVPEDLHVANKKLLIHRAFRAGAQNTSSFQFKHNELP 431 Query: 476 GVIGPTA 482 ++G T+ Sbjct: 432 FLMGNTS 438